NO13G00570, NO13G00570 (gene) Nannochloropsis oceanica

Overview
NameNO13G00570
Unique NameNO13G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length545
Alignment locationchr13:197522..198066 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:197522..198066 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001845NSK001845Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00570.1NO13G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|544598gene_6960Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100505g1gene8700Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00570.1NO13G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00570 ID=NO13G00570|Name=NO13G00570|organism=Nannochloropsis oceanica|type=gene|length=545bp
ATGGCCGACAACTGGGACGACGACGACAAGgtacgtacgacgagactttt
cagtgtatgtggctgtatgaatggatggcctgacctctcataacaccaac
tttgctcccctacctaccacccttgctttcctctcctctcctctttcctc
actgccgttctcctccccttcccatctccgtcacaccacacatcagGCAC
CCGTGCGCAGTGCGCCTCAAAAATCATGGGCGGATGACGACGATGACTTC
ACGCCTGTCCGACCCACCACCCAAAAGGAGgtgacttaccctgccccaca
acgtactgctgctggtccttcccgcggtggcggctttgggggcgctacag
CCGCGGCTCGTGACTTTAGCGACCGTGGCGGTGCACGTGGGGAGGGCGAT
TTTTCCAACTTTGGGTCACGAAGAAGCGGGGGAGGCCGGGAAGGAGGGAG
GGGAGGAGAAGGCGGTTACCGTGGACGAGGACGAGGGAGGGGACGTGGAG
GGGATCGACAGCGAGGGGGGGGGGGTTTGCCAGGCAGCGTATTGA
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protein sequence of NO13G00570.1

>NO13G00570.1-protein ID=NO13G00570.1-protein|Name=NO13G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MADNWDDDDKAPVRSAPQKSWADDDDDFTPVRPTTQKEPRLVTLATVAVH
VGRAIFPTLGHEEAGEAGKEGGEEKAVTVDEDEGGDVEGIDSEGGGVCQA
AY*
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Synonyms
Publications