NO13G00560, NO13G00560 (gene) Nannochloropsis oceanica

Overview
NameNO13G00560
Unique NameNO13G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr13:195663..196595 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:195663..196595 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO13G00560 vs. NCBI_GenBank
Match: EWM21731.1 (hypothetical protein Naga_100505g2 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.400e-80
Identity = 148/198 (74.75%), Postives = 170/198 (85.86%), Query Frame = 0 
Query:   61 FSRGKTQDAATSTMSSGTVIKPFVKDQADSKWDTGRFFRAVVDAQVNQVTEEVNRVRAFITIPPGVFNANRHPEEVAQQVGKLAVDVGFGYLQSAALGYAFGFGGALMADDMTKKLGARFCGKTFPHKRGLKQAKQFGEFCAAFTAFEGLMHVGRGVNDKWNGIVGSTMVGMFMMRNRPLPAQLKNGLTFGGFNYVIS 259
            FSRG+T     + +S+    K F   Q D +WDTGRF RAVVDAQV QV+EEVNRVRAFIT+PPG+ N +R+PEEVA+QVGKL VDVG GYLQSAALGYAFG+GGA+MADDMTK+LGARFCGKTF HKRG+KQAKQFGEFCAAFTAFEG++HVGRG++DKWNGI+GST VGM+  RNR L AQLKNGLTFGGFNYV+S
Sbjct:   79 FSRGRTSSVQEAPLSTNQP-KAFSNVQDDDRWDTGRFLRAVVDAQVAQVSEEVNRVRAFITLPPGIVNTSRNPEEVAEQVGKLVVDVGMGYLQSAALGYAFGYGGAVMADDMTKRLGARFCGKTFAHKRGIKQAKQFGEFCAAFTAFEGILHVGRGISDKWNGILGSTAVGMYTTRNRALSAQLKNGLTFGGFNYVLS 275
The following BLAST results are available for this feature:
BLAST of NO13G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21731.11.400e-8074.75hypothetical protein Naga_100505g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00560.1NO13G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596916gene_6961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00560.1NO13G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00560 ID=NO13G00560|Name=NO13G00560|organism=Nannochloropsis oceanica|type=gene|length=933bp
ATGGGAGGGGCCGCGTCTTACTCCCCCTGTACGTGCTCCACCACCACGGT
ATCAAGACGGAGAAGCTCCTTCCGCCGCTCCCCTACCTTACTCTTTGTGC
TTCTTGTTGCATCGCTATTCAGCGCAGCTAGTGCGATTCTCTCCGCCACT
ACCTACCCCCGCACCCGCGCCGCCGTATTATTCTCCCGAGGCAAGACACA
AGACGCTGCTACAAGTACCATGTCGTCAGGCACCGTGATCAAACCCTTTG
TCAAGGACCAAGCTGATAGCAAATGGGATACGGGGCGTTTCTTTCGGGCC
GTGGTGGACGCGCAAGTTAATCAGGTCACAGAGGAGGTCAATCGCGTTCG
TGCATTTATCACCATCCCTCCCGGGGTGTTCAACGCAAACAGGCACCCGG
AGGAAGTCGCGCAGCAGGTGGGTAAGTTGGCAGTGGACGTAGGATTTGGT
TACTTGCAGAGTGCGGCGCTGGGGTACGCGTTCGGGTTTGGAGGGGCGTT
GATGGCAGATGACATGACCAAGAAATTGGGAGCGAGGTTTTGTGGTAAGA
CTTTTCCGCATAAGCGGGGATTGAAGCAGGCAAAGCAGTTTGGGGAGTTC
TGTGCAGCCTTTACGGCGTTTGAGGGTTTGATGCACGTGGGTAGGGGGGT
GAATGATAAGTGGAATGGGATTGTGGGGTCCACGATGGTAGGAATGTTCA
TGATGCGCAACCGACCGTTACCGGCGCAGTTGAAGAATGGGTTAACGTTC
GGTGGCTTCAATTATGTGATCTCGGCGTTTGGGGGGGGGAAGCCGGTGGA
GGGGAAGGGTGGGAAGGACGGAGAGAAGGCGGTGAAGGGTCCTGTGTTTC
AGAAAGAATTACAGGCCAAGATGAGGAAATTGGAGGCGGAGGCAGAGAGG
AAGAAGAGGAGTAGCAGCCATGTGAAGAAGTAA
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protein sequence of NO13G00560.1

>NO13G00560.1-protein ID=NO13G00560.1-protein|Name=NO13G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGGAASYSPCTCSTTTVSRRRSSFRRSPTLLFVLLVASLFSAASAILSAT
TYPRTRAAVLFSRGKTQDAATSTMSSGTVIKPFVKDQADSKWDTGRFFRA
VVDAQVNQVTEEVNRVRAFITIPPGVFNANRHPEEVAQQVGKLAVDVGFG
YLQSAALGYAFGFGGALMADDMTKKLGARFCGKTFPHKRGLKQAKQFGEF
CAAFTAFEGLMHVGRGVNDKWNGIVGSTMVGMFMMRNRPLPAQLKNGLTF
GGFNYVISAFGGGKPVEGKGGKDGEKAVKGPVFQKELQAKMRKLEAEAER
KKRSSSHVKK*
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Synonyms
Publications