NO13G00540, NO13G00540 (gene) Nannochloropsis oceanica

Overview
NameNO13G00540
Unique NameNO13G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1410
Alignment locationchr13:187853..189262 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:187853..189262 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00540.1NO13G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00540.1NO13G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00540 ID=NO13G00540|Name=NO13G00540|organism=Nannochloropsis oceanica|type=gene|length=1410bp
AACAACAGGCAGGACAGCATGAACAGCAGTAGCAATGGCAGTACTGTTAA
GGAGCGCCCAAGAGCGGGGGGCTGGAGCGAGGCGGAGCTTCTATCCATGG
CTTTCAGGAAAAAACAGAGGGAGGAGGCGGAGGAGGCAGCACAGCAACTG
GAGCGCAGGTGTACAAGCAAGAACACTAAAAAGAACAAGAAGAAGAAGAC
GAGGAAGCGTCGGCACTCTTTCTCCTCTTTCTCCTCCTCCTCCATGTCAC
GCTCTCGCTCTCCACTGCCCACCCGTCATCGTGTTGCCTCCCCTCCACCC
CCAGACCCCTACTCATCCCTCCTCCGTCAGGGAGGCTCGTTTGCCCGCCA
TCACCGAGACCGTCCTTACCTTCCTCCGCCCACCTCGACACGTGATTGTG
GCTATCACTGTAAAAGTAGGGAAGAAGACGACCGCAGAGGCCGAAGCAGG
AGCAGGAGCAGGAGAAGGAGGAGTACCAGTTGGAATCGGAGGAGGAAGCA
GCGGAGCAGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCA
TCCGGAGCAGCAGTGACGGTAGACGTAAGCACAAGATAGACACCGAGAAA
TCCGCCTCCGGCTCCCGTGAACGAAACCGTGGCACCGATGACGACGACAG
CCACGGTTCAAGGAAAGGGCGGCGGCATCAGCGGAAGCATAGCAGTCAGG
TGAGCATGACTAGCTCTCTCTCTACCCACCAAAGCGACGCTGCTTGGCCT
TTGGGTGAGGTTGATGAATTTGGCCGCACCACCACCTTGCACAAACGTAC
GGTGGCCAGGCCTACCCGCAGCAGTAGCAGCAGCGCGGACAGAGGAGAGG
GAGAGAGCTCGAAATGCCGTCGTTATCGCAGCAACGGGAAGAGGACGATG
GCGCGAAACCGTGAGCATTCCTGGTCTCAGTCTCGCTCCCGTTCACGTTC
CTGTGCCAAGAATCGCAGTCGGAGTCGGAGCCGGAGTTGTGGTAGCCAGA
AGAGGAGAAGTAGGGAGAGGAGCAGGAGTAGGGAGAGGGCATGGAGTCCA
GGCCCTGACAATCTAAGGCAGTGGAACCGCGATAAATTTGCAGAGGTGGT
GCGGGAGGAAGAGGAGGAAGGTAGGGAGACGGGGGGGAAGGAAGGCCGGA
GTCCGTATAGGAGAGTGTCGAGAGACTACGTCCCGCCATTGCCGACGTGG
AAGAGCAAAGCCGGGGGGGTGTATATTCCAATAGTGCGGAAGTAAGTGAG
TTCGTGCAAGGGACCTTGAAATCCCTAGGACCTTTCCATCTTTCGATGAC
ATGACCACCAAGAGAAACTCTTGGGGCTTTGTCGTGTCAGCCAGCCCCCT
ATTTAAAATGAAAGCCTTAGGATCGCCCATAGGGTAAAGCACGAATCACA
ATTATAGGAA
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protein sequence of NO13G00540.1

>NO13G00540.1-protein ID=NO13G00540.1-protein|Name=NO13G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MNSSSNGSTVKERPRAGGWSEAELLSMAFRKKQREEAEEAAQQLERRCTS
KNTKKNKKKKTRKRRHSFSSFSSSSMSRSRSPLPTRHRVASPPPPDPYSS
LLRQGGSFARHHRDRPYLPPPTSTRDCGYHCKSREEDDRRGRSRSRSRRR
RSTSWNRRRKQRSRSRSRSRSRSRSRSIRSSSDGRRKHKIDTEKSASGSR
ERNRGTDDDDSHGSRKGRRHQRKHSSQVSMTSSLSTHQSDAAWPLGEVDE
FGRTTTLHKRTVARPTRSSSSSADRGEGESSKCRRYRSNGKRTMARNREH
SWSQSRSRSRSCAKNRSRSRSRSCGSQKRRSRERSRSRERAWSPGPDNLR
QWNRDKFAEVVREEEEEGRETGGKEGRSPYRRVSRDYVPPLPTWKSKAGG
VYIPIVRK*
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Synonyms
Publications