NO13G00480, NO13G00480 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G00480 vs. NCBI_GenBank
Match: EWM22890.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 1046.2 bits (2704), Expect = 1.100e-301 Identity = 913/1538 (59.36%), Postives = 977/1538 (63.52%), Query Frame = 0
Query: 43 SLSSSWG-GLRMGFTAILAVSVFGRRGTQAFLLPAPLWGPTTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTGIASCSSPISLVS--IVPSTRALP-----SSSFLLYATSSTSPPSSKTNP----RERLYNLVNDLHAHRDAGHKDGVLSTVQCILEDRTLDLTPKHCTMLVSALGAVGLSRETVTALKEMKGRGLSLNKVTYGAVVNACAYGKDMAAARRVMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEHYHPTASTCHSALKASLALNDLHTAVAAMTTLLREGWTMGRTVYATLQLRLLVGGNVEMLRNLMLEAEKEMPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDTNSCNLLLTELAKWRRFDLAYTFLSLMNDLHLGPSDAVSYNIMMDLALKVKRPNKVRELLAEMQARGIRPEVITYNILLSACANVADDRTQALGLWADFKASGLLADRILYLSLMRALGPETADRRTVFELLDEASEAGIPLDTQLANYALRLLAGAKDLTGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIVALTSAMTACEAGKAFEEGLALWDKMQEIGLRPTMATVDVALKLCEKVLGGFTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKDTHRHVTVSRAIAILEQSIEWGLVGRRAIFRRVLRMVEAERGRNEMIAYADYLFKSGRFRRFPEEGRLLMVEALCDVGLFRHALHILREAAPADLGERKRLYGLVMAAASEGGDHELVFSLHDEVLTHMGPGPAANRDVYQAVLLSLRAVGLNTGPRMAAKAAAEEHSPEARWQRLVAEM--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAREWELGTRALIEVGKRRLAFDEQTYQQAIAILAERREGPRAVQLLREMQGRGFQARTSEYNHAMFACQDKNWATALELFREVESGAA-GVRMDTGTIMAALGACRIGKQWQLAASIFDSARSQEVEPSLVLFNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNNFVYCSAMSACNRGNEPALALTLLDQMRIQDNVAPDQYTINEALNACAKGGMCERALGILEVAREGGVALDVISYNKALQACISTRHWPEAQDLMRQMAAERVAPDRTTHSLVEEVFLHGPPSAPDAALLEG 1566
S SS W G R A LA+SV G + +AF R G + LV + P +R P S+FLL A +T+P S TNP RERLY+LVN LHA RDA K GV+ TVQ IL+D TLDLTPKHCTMLVSALGAVGL RETV A+ MK RGLSLNKVTYGAV+NACAYGKDMAAAR VM+ T+ Y PTAS CH+ALKASLALND+ TAVAA TTLLREGWTMGR +YA++Q RLL+GG +L L+ EAEKEMP+ HDTNSCNLLLTELAK RR DLA FLSLMN+L LGP+DAVSYNI+MDLALKVKRP K+REL AEMQ RGIRPEVITYNILLSACA VA+DRTQALGLWADFKASGLLADRILYLSLMRAL P+TADRRTV LLDEAS AGIPLDTQLANYALRLLAGA+D+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN+VALTSAMTACE GKA+EEGLALW KMQ++GLRPTMATVDVALKLCEKVL G + XXXXXX XXXXXX +++ RHVTVSRAI ILEQSIEWGLVGRRAIFRRVLRMV+AERGR EM+AY D LFKSGRFRRFPEEGRLLMVEALCDVGLFRHALHILREAAPAD+GERKRLYGLVMAAA+ G DH+LVF LHDE++ HMGPGPAANRDVY AVLLSLRAVG++TGP +AAKA AEE SPEARWQRL EM VAAREWELGTRAL+E+GKRRLAFDEQTYQQAIAILAERREGPRAVQLLREMQGRGFQART+EYNHAMFAC D++WATALELF EVESGA GVRMDTGT MAALGACR GK+WQLA++I +SAR+QEVE SLVLFNA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNNFVYCSAMSACNRGNE +AL LLDQ I+TR WPEAQDLMRQMAAERVAPDRTTHSLVEEVFLHGPPS P + G
Sbjct: 47 SSSSPWSFGFRTRLAAFLAISVLGHQSVEAF-----------RCVPRCQKVSRGWVATGSMRSISCNGDRPLRGKDGSRPLLELVGNPVPPPSRLCPPSCNRPSTFLLSAIPNTTPSPSNTNPVADSRERLYSLVNVLHAQRDAADKAGVMETVQLILKDSTLDLTPKHCTMLVSALGAVGLPRETVVAMHAMKERGLSLNKVTYGAVINACAYGKDMAAARLVMDEMRSDGVMPDAVEYSNLLHGYKRLNATEECLACFDEMLFYGIKATTRTYDGVLGALAAAERWPVFRMYLDRMRKEGVRLSAITYGWAVRGAERGEDWGEVLKLFRAMQTDRYQPTASACHAALKASLALNDVETAVAATTTLLREGWTMGRRLYASVQFRLLMGGKRNLLEALVREAEKEMPSV--------SAAAVEYGAITLSRDQGTKGKAAVRLVPFPPSTGPPIPSFPYHDTNSCNLLLTELAKHRRLDLACIFLSLMNELGLGPADAVSYNILMDLALKVKRPGKLRELFAEMQQRGIRPEVITYNILLSACATVAEDRTQALGLWADFKASGLLADRILYLSLMRALRPDTADRRTVLTLLDEASSAGIPLDTQLANYALRLLAGARDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVVALTSAMTACETGKAYEEGLALWGKMQDVGLRPTMATVDVALKLCEKVLVGLASTPSPXXXXXXTPVLKGYPFAPADAPSESSRTWQGTKSPRPGEDILPIAGLTSPXXXXXXPT-----------------------------------------------------------------------------------QESPRHVTVSRAITILEQSIEWGLVGRRAIFRRVLRMVQAERGRQEMVAYVDTLFKSGRFRRFPEEGRLLMVEALCDVGLFRHALHILREAAPADVGERKRLYGLVMAAAAAGADHDLVFQLHDEMMAHMGPGPAANRDVYHAVLLSLRAVGVDTGPGLAAKATAEERSPEARWQRLAMEMLGACTGEVGREGVAGRTRPSSASNMSGKESGPIVRGGNEVLAACVAAREWELGTRALVELGKRRLAFDEQTYQQAIAILAERREGPRAVQLLREMQGRGFQARTAEYNHAMFACLDRHWATALELFHEVESGAVPGVRMDTGTTMAALGACRSGKKWQLASAILESARAQEVELSLVLFNAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNNFVYCSAMSACNRGNESEMALKLLDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXITTRRWPEAQDLMRQMAAERVAPDRTTHSLVEEVFLHGPPSNPAVDMESG 1482 The following BLAST results are available for this feature:
BLAST of NO13G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 1
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00480 ID=NO13G00480|Name=NO13G00480|organism=Nannochloropsis oceanica|type=gene|length=4957bpback to top protein sequence of NO13G00480.1 >NO13G00480.1-protein ID=NO13G00480.1-protein|Name=NO13G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1622bpback to top Synonyms
Publications
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