NO13G00350, NO13G00350 (gene) Nannochloropsis oceanica

Overview
NameNO13G00350
Unique NameNO13G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1255
Alignment locationchr13:116396..117650 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:116396..117650 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001869NSK001869Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00350.1NO13G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118588gene_6980Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100676g2gene7572Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00350.1NO13G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00350 ID=NO13G00350|Name=NO13G00350|organism=Nannochloropsis oceanica|type=gene|length=1255bp
ATGGCCGGCCGCGGAAGAGGCCGGGGCATGACGTTACCAGCgtaagtacc
tgtgtgtcttgtgcttctgatgtacgtgtctcgtctgttgttttattctt
ccgcaacaacgctcatcatcgtcctgaacctaacacacattacgcccgcc
ctaccaaatgtgggaaatcaattgcgctaccagagctgctgctctataga
tagtctccgttattatgcctgaccttccttcttacactcacgcatgcgtt
ccacccactcccgcctcaaacttttttcttgacagATGGATGACCAAAGA
AGGCGGCCCAGCCCCCGCCGCAGGCTCCAGCACCAGCACCAATGGCAGCA
GCAGCAGCAGCAGTCTGGGAGGCCTCCAAGAATCCGGCAGTGGCAGTAGT
AGTTCCTTAAGCAATAGCCGCAAATCACGTTGGGGTGGCGACTCTCCCCA
GAGGGCGTCATCACCCGCCCCCGCGCCCGTCCGTGCCCCCTCTCCAATGC
CAGCTCCTGTTCCTGCTCCTGCTCCTGCACCTGGACCGACACCAGTTCGG
GTGCCATCTCCTTCTTCCAACAGCACAAGCAGTACCACCATCCAAGCCTC
TGCCACCACCACGACAGCCACGCCTACAGCAGCGACGGCGAGCCCCCGTG
TGCCATCCCCCTCGGCAGCGTATGGAAGCCTGGCCGCCGGTGGAGGGAGA
GGAGGAGGAGCAGCTGGAGGAATGGGAGTCCACCAGCACATGCACATGCA
GCAGCAACAGCTGCCGCAGCACCAGGCGTATGGATCATGGCAGCAGCAAC
ACCACTTCCAACCACAGCTGCAGCAGCAGTATCAGCAGAGCCAACAGGAC
TACTACAACCAATATTATCAACAGCAGCAGCAGgtatatcttcttccttc
ttgaaaaatctctcacgtctgccacacgaccttgcctcaagggccaatcg
tccacctgaccttctcctttctcccttccctccttccacagCAATACTAC
GGACAAGTTATGCAAGCCGCCTCCTACACCACCCCAGCCACTGCCGCTGC
TCCCTCCCCTGTTTCGGCTCCGCCCCCCATCCCTCCCGAGATAGCCGAAA
ACGTGGAGGACGGCTACGAGCCCGTCTTTGACGAGAAGAGTAAGTACTGG
TACTTTTGGAAGGCCTCTACGAACGAGGTGACGTGGGACAAGCCTCTCAA
GGATAAGAGCAAGGCTTTCGTGCCCCCACCACCGCCAGGGCCGCCTCCAA
CGTGA
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protein sequence of NO13G00350.1

>NO13G00350.1-protein ID=NO13G00350.1-protein|Name=NO13G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MAGRGRGRGMTLPAWMTKEGGPAPAAGSSTSTNGSSSSSSLGGLQESGSG
SSSSLSNSRKSRWGGDSPQRASSPAPAPVRAPSPMPAPVPAPAPAPGPTP
VRVPSPSSNSTSSTTIQASATTTTATPTAATASPRVPSPSAAYGSLAAGG
GRGGGAAGGMGVHQHMHMQQQQLPQHQAYGSWQQQHHFQPQLQQQYQQSQ
QDYYNQYYQQQQQQYYGQVMQAASYTTPATAAAPSPVSAPPPIPPEIAEN
VEDGYEPVFDEKSKYWYFWKASTNEVTWDKPLKDKSKAFVPPPPPGPPPT
*
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Synonyms
Publications