NO13G00320, NO13G00320 (gene) Nannochloropsis oceanica

Overview
NameNO13G00320
Unique NameNO13G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr13:108048..109523 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:108048..109523 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO13G00320 vs. NCBI_GenBank
Match: EWM22872.1 (hypothetical protein Naga_100931g2 [Nannochloropsis gaditana])

HSP 1 Score: 135.6 bits (340), Expect = 1.500e-28
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 0 
Query:    2 VTAAFNVAAPLLRASCRRCTSSTSQITQRFLGSSP----ASGRAAAAHHGLEMTPATKRNNRLVALACLAFAGSVYTYSIRKLKEEDLNDLEEDITVVNLHESGLKATKFKGLLEESQ 116
            +T     AA +LR S RRCT+S  Q T R +  SP    ASGRA    H LE+TP  +R NR VALAC+ FAGSVYTYSIRKLKEEDL+DLEE++TVVNLHESGLKATKFK LLEES+
Sbjct:   57 MTIVTTAAAAVLRLSRRRCTASLHQ-TMRHVRPSPFSTNASGRAHTPPHHLEVTPEVRRRNRFVALACVVFAGSVYTYSIRKLKEEDLSDLEEEVTVVNLHESGLKATKFKSLLEESR 173
The following BLAST results are available for this feature:
BLAST of NO13G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22872.11.500e-2865.25hypothetical protein Naga_100931g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL133nonsL133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001875NSK001875Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00320.1NO13G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00320.1NO13G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00320 ID=NO13G00320|Name=NO13G00320|organism=Nannochloropsis oceanica|type=gene|length=1476bp
CGGATGAGTAAATCGAAGAATACGAAGGCGGCGTGTAGTTCTGCAACCGA
CAGCAACGTCTTGAGCGAGCACGTGAACCAGTGGGTCGCCCTTATGCCAC
ACATTCCATAATACACCCGTGTTCCACACCCGCTGGCCTGCTGTGTGAAA
GTTTTGAAGTTTGCTTTACTCCTGACCCCTCCATCTCATTCCCACACCCA
CACAGGGACGCACACACAGCCACAACTCTGCCCTAGTCTCATCGCAAACC
TGCGTCATCGTCGTAGCCGCTCCATTTACCTACACTGCACAGCGCGATGG
TAACTGCTGCCTTCAATGTCGCCGCCCCGTTGCTTCGTGCCAGCTGCAGA
AGATGCACTTCTTCGACCAGCCAGATAACGCAGCGCTTTCTGGGTTCTTC
CCCTGCCAGCGGACGGgtacgcatcaggaccctcttccctccctccctct
ttcccaccctccctccctgctcttgttcgacaatcaccgtatgtgcgtcc
atctaaactccttacatctctatctcttcgcatccctgccaacgtatccg
gcgatttctatctgcctgtgcgaccgttgtgtcgatcacctcaatcctat
gtgatcatgccctcctctcctccctccctccctccctccctccctccctc
tattcctcttttatcagGCCGCCGCCGCGCACCATGGCTTGGAAATGACC
CCCGCCACGAAGCGAAACAACCGGTTGGTGGCTCTAGCATGCCTGGCCTT
TGCCGGCTCTGTGTACACGTACTCAATTCGCAAGCTGAAGGAGgtgaggg
agggagggagggagggagggaggaaagggagggcgggatctaggttggga
agcataaattcactgtctcgtgttgttcctgttcttttctctatccccgg
tggtattgtcccttctctaatgctatcaccgccccgctgtccctcacaca
cctctccccatcctcctccctccctccctctctccctcccaccctcctct
cccacagGAGGATCTGAACGATTTGGAGGAAGACATCACTGTGGTTAATT
TACACGAGAGTGGCCTCAAGGCGACTAAATTCAAGGGCCTGCTGGAAGAG
AGCCAAAAGAAGGAGCAGGAGAAGGAGGAGGAGGAGGAGGAGATGGAGCG
CCAGAGGGAGAGGGGGGTGGTGCCGGGTGTGGCAATGATAGCGAACGAGG
GAAGCTCGGAAGGAGAGGGGGGGAAGGTGGGAGGGAAGGCGGGCTGGAAG
AAGTGGGTGTTTTTCTGGCAGAAGTAAGCGCATGCAGAGTAGTGTGGACG
GCTGAAAAGAGGGAGAGAGGGAGGGAGGGAGGGAGGGGAGTAGTTTTTGC
GTGGATAGTCCACAGAGGAGAAGCAGAGAAAGAAAAGGCTTCCACGTCCT
TTTTGTAAAGAAAAAAAAGAAGTTCAAGAAGAAGAAGCAGCATCAGCAGC
AGCAACCCCAAAAAGAATGAGTAAGA
back to top

protein sequence of NO13G00320.1

>NO13G00320.1-protein ID=NO13G00320.1-protein|Name=NO13G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MVTAAFNVAAPLLRASCRRCTSSTSQITQRFLGSSPASGRAAAAHHGLEM
TPATKRNNRLVALACLAFAGSVYTYSIRKLKEEDLNDLEEDITVVNLHES
GLKATKFKGLLEESQKKEQEKEEEEEEMERQRERGVVPGVAMIANEGSSE
GEGGKVGGKAGWKKWVFFWQK*
back to top
Synonyms
Publications