NO13G00290, NO13G00290 (gene) Nannochloropsis oceanica

Overview
NameNO13G00290
Unique NameNO13G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr13:103267..105045 +

Link to JBrowse

Properties
Property NameValue
DescriptionRegulator of chromosome condensation (RCC1) family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:103267..105045 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Homology
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: POM59845.1 (Regulator of chromosome condensation (RCC1)-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 345.1 bits (884), Expect = 1.900e-91
Identity = 157/250 (62.80%), Postives = 191/250 (76.40%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLTE+ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L G +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGHS+E+N    R VEA+ G R+KQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPFLVETLKGMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKAIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHSSERNQPVARFVEALSGKRVKQVACGG 252
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: XP_009514529.1 (hypothetical protein PHYSODRAFT_358246 [Phytophthora sojae] >EGZ27254.1 hypothetical protein PHYSODRAFT_358246 [Phytophthora sojae])

HSP 1 Score: 342.8 bits (878), Expect = 9.400e-91
Identity = 155/250 (62.00%), Postives = 191/250 (76.40%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLT++ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L G +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGH++E+N    R VEA+ G R+KQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTDEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPFLVETLKGMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKNIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHNSERNQPVARFVEALAGKRVKQVACGG 252
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: OQR99054.1 (regulator of chromosome condensation (RCC1)-like protein [Achlya hypogyna])

HSP 1 Score: 342.8 bits (878), Expect = 9.400e-91
Identity = 157/250 (62.80%), Postives = 191/250 (76.40%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P  VE L+ ++VVQIACGSGHTVVL E+ DV++WGRGDDGRLGH DN WK+VP LV AL GK IKQVTCGSYHTAA++ +G L+TWGGGMYGKLGHGNE GH  P  V+ L   +V+Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  LK   ++Q++ACGFHTAA+S+ G L+T+GEGKFGRLGH++E+N +  R VE + G RIKQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQYRPVLVEALREKSVVQIACGSGHTVVLDENGDVYTWGRGDDGRLGHGDNGWKFVPRLVEALHGKRIKQVTCGSYHTAAVTSTGELYTWGGGMYGKLGHGNESGHSVPYLVDTLANHKVDQVACGSRHTVVLLENRDVYTWGDKENGVSGHGDTDGHQYLPCAVDELKDKAIKQIAACGFHTAALSEHGDLYTFGEGKFGRLGHNSERNQLVARLVETLAGRRIKQVACGG 252
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: OQR97108.1 (regulator of chromosome condensation (RCC1) [Thraustotheca clavata])

HSP 1 Score: 342.4 bits (877), Expect = 1.200e-90
Identity = 158/250 (63.20%), Postives = 188/250 (75.20%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            LYSWGRGEDGQ G G T DQ  P  VE L+ + VVQIACGSGHTVVL ED +V++WGRGDDGRLGH DN WK+VP LV +L GK IKQVTCGSYHTAA++ +G L+TWGGGMYGKLGHGNE GH  P  V  L   +V+Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  LK   + Q++ACGFHTAA+SD G L+T+GEGKFGRLGH++E+N +  R VE + G RIKQV   G
Sbjct:  244 LYSWGRGEDGQLGLGDTTDQYRPVLVEALREKNVVQIACGSGHTVVLDEDGNVYTWGRGDDGRLGHGDNGWKFVPRLVESLHGKRIKQVTCGSYHTAAVTSTGELYTWGGGMYGKLGHGNESGHSVPYLVSTLSNHKVDQVACGSRHTVVLLENRDVYTWGDKENGVSGHGDTDGHQYLPCAVDELKDKSIMQIAACGFHTAALSDKGELYTFGEGKFGRLGHNSERNQLVARMVETLSGRRIKQVACGG 493
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: CBN79063.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 342.0 bits (876), Expect = 1.600e-90
Identity = 158/253 (62.45%), Postives = 188/253 (74.31%), Query Frame = 0 
Query:    1 MLYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEAL--IGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            ++YSWGRGEDGQ G G T+DQ+ P  V+ LK + VVQ+ACGSGHTVVL+ED  V++WGRGDDGRLGH DN WKYVP +V AL G+ I Q TCGSYHTAA++D G L+TWGGGMYGKLGHGNE GHP PC V+ L   G  V QIACGSRHT  L   G+VY WGD+ENGV G      HQY+PR L +L+   + QV+ACGFHTAA++  G ++TWGEGKFGRLGH  E+N M PR VEA+ G R+  V   G
Sbjct:    8 LVYSWGRGEDGQLGLGDTNDQDRPVLVDALKSKGVVQVACGSGHTVVLSEDGAVYTWGRGDDGRLGHGDNGWKYVPRIVEALEGQRIVQATCGSYHTAAVTDKGELYTWGGGMYGKLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVGHTNADGHQYLPRMLESLQAKTVTQVAACGFHTAALTAAGEIFTWGEGKFGRLGHGMERNQMVPRMVEALMGKRVGHVACGG 260
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: XP_008903094.1 (hypothetical protein PPTG_10207 [Phytophthora parasitica INRA-310] >XP_008903095.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI50972.1 hypothetical protein F443_05593 [Phytophthora parasitica P1569] >ETI50973.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK90868.1 hypothetical protein L915_05458 [Phytophthora parasitica] >ETK90869.1 hypothetical protein, variant [Phytophthora parasitica] >ETL44279.1 hypothetical protein L916_05404 [Phytophthora parasitica] >ETL44280.1 hypothetical protein, variant [Phytophthora parasitica] >ETL97446.1 hypothetical protein L917_05293 [Phytophthora parasitica] >ETL97447.1 hypothetical protein, variant [Phytophthora parasitica] >ETM50603.1 hypothetical protein L914_05410 [Phytophthora parasitica] >ETM50604.1 hypothetical protein, variant [Phytophthora parasitica] >ETN11277.1 hypothetical protein PPTG_10207 [Phytophthora parasitica INRA-310] >ETN11278.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO79726.1 hypothetical protein F444_05644 [Phytophthora parasitica P1976] >ETO79727.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP20739.1 hypothetical protein F441_05607 [Phytophthora parasitica CJ01A1] >ETP20740.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP48682.1 hypothetical protein F442_05639 [Phytophthora parasitica P10297] >ETP48683.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 341.7 bits (875), Expect = 2.100e-90
Identity = 155/250 (62.00%), Postives = 190/250 (76.00%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLTE+ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L   +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGH++E+N    R VEA+ G R+KQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPFLVETLKSMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKSIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHNSERNQPVARFVEALAGKRVKQVACGG 252
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: XP_012196477.1 (hypothetical protein SPRG_02515 [Saprolegnia parasitica CBS 223.65] >KDO32822.1 hypothetical protein SPRG_02515 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 341.7 bits (875), Expect = 2.100e-90
Identity = 158/250 (63.20%), Postives = 189/250 (75.60%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P  VE L+ + VVQIACGSGHTVVL E+ DV++WGRGDDGRLGH DN WK+VP LV AL GK IKQVTCGSYHTAA++ +G L+TWGGGMYGKLGHGNE GH  P  V+ L   +V+Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  LK   + Q++ACGFHTAA+SD G L+T+GEGKFGRLGH++E+N +  R VE + G RIKQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQYRPVLVEALRDKCVVQIACGSGHTVVLDENGDVYTWGRGDDGRLGHGDNGWKFVPRLVEALHGKRIKQVTCGSYHTAAVTVTGELYTWGGGMYGKLGHGNESGHSVPYLVDTLSNHKVDQVACGSRHTVVLLENRDVYTWGDKENGVSGHGDTDGHQYLPCAVDELKDKSIMQIAACGFHTAALSDEGELYTFGEGKFGRLGHNSERNQLVARVVETLHGKRIKQVACGG 252
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: KUF64359.1 (E3 ubiquitin-protein ligase HERC2 [Phytophthora nicotianae])

HSP 1 Score: 341.7 bits (875), Expect = 2.100e-90
Identity = 155/250 (62.00%), Postives = 190/250 (76.00%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLTE+ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L   +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGH++E+N    R VEA+ G R+KQV   G
Sbjct:  128 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPFLVETLKSMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKSIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHNSERNQPVARFVEALAGKRVKQVACGG 377
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: XP_008609568.1 (hypothetical protein SDRG_05620 [Saprolegnia diclina VS20] >EQC36786.1 hypothetical protein SDRG_05620 [Saprolegnia diclina VS20])

HSP 1 Score: 340.9 bits (873), Expect = 3.600e-90
Identity = 157/251 (62.55%), Postives = 190/251 (75.70%), Query Frame = 0 
Query:    1 MLYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            ++YSWGRGEDGQ G G T DQ  P  VE L+ + VVQIACGSGHTVVL E+ DV++WGRGDDGRLGH DN WK+VP LV AL GK IKQVTCGSYHTAA++ +G L+TWGGGMYGKLGHGNE GH  P  V+ L   +V+Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  LK   + Q++ACGFHTAA+S+ G L+T+GEGKFGRLGH++E+N +  R VE + G RIKQV   G
Sbjct:    8 VVYSWGRGEDGQLGLGDTSDQYRPVLVEALRDKCVVQIACGSGHTVVLDENGDVYTWGRGDDGRLGHGDNGWKFVPRLVEALHGKRIKQVTCGSYHTAAVTVTGELYTWGGGMYGKLGHGNESGHSVPYLVDTLSNHKVDQVACGSRHTVVLLENRDVYTWGDKENGVSGHGDTDGHQYLPCAVDELKDKSIMQIAACGFHTAALSEEGELYTFGEGKFGRLGHNSERNQLVARVVETLHGKRIKQVACGG 258
[Close]
BLAST of NO13G00290 vs. NCBI_GenBank
Match: XP_002902385.1 (regulator of chromosome condensation (RCC1)-like protein [Phytophthora infestans T30-4] >EEY56311.1 regulator of chromosome condensation (RCC1)-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 340.5 bits (872), Expect = 4.600e-90
Identity = 154/250 (61.60%), Postives = 190/250 (76.00%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLTE+ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L   +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGH++E+N    R V+A+ G R+KQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPYLVETLKSMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKSIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHNSERNQPVARFVDALAGKRVKQVACGG 252
The following BLAST results are available for this feature:
BLAST of NO13G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
POM59845.11.900e-9162.80Regulator of chromosome condensation (RCC1)-like p... [more]
XP_009514529.19.400e-9162.00hypothetical protein PHYSODRAFT_358246 [Phytophtho... [more]
OQR99054.19.400e-9162.80regulator of chromosome condensation (RCC1)-like p... [more]
OQR97108.11.200e-9063.20regulator of chromosome condensation (RCC1) [Thrau... [more]
CBN79063.11.600e-9062.45conserved unknown protein [Ectocarpus siliculosus][more]
XP_008903094.12.100e-9062.00hypothetical protein PPTG_10207 [Phytophthora para... [more]
XP_012196477.12.100e-9063.20hypothetical protein SPRG_02515 [Saprolegnia paras... [more]
KUF64359.12.100e-9062.00E3 ubiquitin-protein ligase HERC2 [Phytophthora ni... [more]
XP_008609568.13.600e-9062.55hypothetical protein SDRG_05620 [Saprolegnia dicli... [more]
XP_002902385.14.600e-9061.60regulator of chromosome condensation (RCC1)-like p... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL133nonsL133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001871NSK001871Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00290.1NO13G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597065gene_6988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00290.1NO13G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00290 ID=NO13G00290|Name=NO13G00290|organism=Nannochloropsis oceanica|type=gene|length=1779bp
CAGGGCGCGCCCACAGGGCAACCTCGCCATGCTTTACTCGTGGGGCCGAG
GCGAGGACGGGCAATGCGGTAATGGAAGCACGCACGACCAGGAGCTGCCC
ACGCCGGTGGAGGGCCTTAAGCATCAGACTGTGGTTCAGATCGCCTGCGG
CTCGGgtacggagcgtggagggagagagggaaggaaatggctcgttatgc
ctctggatgttttgaactcacgtctcgttgatttatttcatttcatcacg
ggtttgcgcgcacatatagGCCATACAGTGGTGTTGACGGAGGACAAGGA
CGTTTGGTCATGGGGGCGGGGGGATGACGGCCGCCTGgtgagcaagggag
ggagggaaggaaaaaaggagcgaaggaggtacatggaggccatggccgcc
gataatgtaatctttgactgtaatgtctcatttgcgatgcatcctcctcc
tcctcctcctcctcctcccttcctcactcaccctcatgcccctcccacag
GGCCATGCAGACAATCACTGGAAGTATGTACCTCACCTTGTGACGGCCCT
GAGCGGGAAGAGCATCAAACAAGTCACATGCGGCTCCTACCACACGgtac
atcattcagcaaggaggaggagagagaggagagtggtcaatagacattca
accctccctctatccacccctccctctctccctccctccctccctccctc
cctccctcgtggcgttttcctgttatcttcaaccctccctccctccctcc
ctccccagGCGGCCATCTCCGACTCGGGTGTGCTCTGGACATGGGGTGGT
GGCATGTACGGCAAATTGGGGCATGGCAACGAATTAGGGCACCCTGCGCC
ATGTCGAGTCGAGGCCTTGATCGGGAAGGAGGTGGAGCAGATCGCCTGTG
GGAGTCGGCATACGGCCGCCCTGCTGAGTGGGGGAGAGGTGTACTGCTGG
Ggtacgtgtagatggactcccctccttctctccctccctccctttttgcc
tccctccctcccccccttcctcgttttgggtccttgtccgggccttggat
ctcttaattccccctctccgatcggaaccagacgacgagcccgaccgacc
ttcctccttccctccctccctccatgcagGCGACCGGGAGAATGGCGTGT
GTGGCATAGGGGAGATGGCGGAGCATCAGTACATCCCTAGGGAGCTGAGT
GCTCTCAAGGGCATCAAGATGAGGCAGGTCTCGGCCTGTGGCTTCCACAC
CGCGgtgcgaaggagggggagggagggagggcgggcgggagggagcgagg
gagcggaggacggaggggaggacggaagaaatgatgcttggatctagcac
agaccagccactatctctctctccctgttaatcggaagccttcagaccag
ccactatctctctctccttgctaatcggaagccgtcctgccaacccacag
GCCATATCCGACGGGGGGATGCTTTGGACGTGGGGgtgagtcatgaccct
cccaccttccctcctcctcacccctccttccttccctcctcatcattctc
ttgctccctccctccttcattcttccctcccgctctccccctgacccacc
atcccgccctccctccttccctccttctcagGGAAGGTAAATTTGGCCGG
CTTGGACACTCAAATGAGAAGAATGTGATGACGCCACGGTGCGTTGAAGC
AGTGCAAGGCATGAGAATCAAGCAGGTAGGTAGGAAGGGAGGGAGGGAGG
GAGGTAGGGAGAAACGAAGAAAGTACTGA
back to top

protein sequence of NO13G00290.1

>NO13G00290.1-protein ID=NO13G00290.1-protein|Name=NO13G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MLYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTE
DKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAI
SDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTA
ALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGF
HTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRK
GGREGGREKRRKY*
back to top
Synonyms
Publications