|
|
Properties
| Property Name | Value |
|---|
| Description | Zn(2)-C6 fungal-type DNA-binding domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr13 | genome | chr13:90796..96743 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006357 | regulation of transcription by RNA polymerase II |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR036864 | Zn2-C6_fun-type_DNA-bd_sf |
| IPR001138 | Zn2-C6_fun-type_DNA-bd |
Homology
BLAST of NO13G00250 vs. NCBI_GenBank
Match: EWM22836.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 325.9 bits (834), Expect = 5.600e-85 Identity = 255/570 (44.74%), Postives = 310/570 (54.39%), Query Frame = 0
Query: 13 SNYPPG--RPPVQLPSNGRKAREQGGLTCAGCKASKVKCNRSWPCTRCVRLNQKCVLPPLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHLHPSQYQNSGENASLTYPLPRPPHRRVTPPVPPLPSLSHSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLHVPRTLLQAGIEGTLLALMHAEREAKAQELGRMMSAAFIRIQREGRCNRPRALVTLRMWWREMLTKDNDVTWGAFESVGQALGVSQAELEGGEGNGGYGSAG-GVFDMLGEEKEQ--LSRLATSTGPR-QERGRQSGXXXXXXXXXXXXXXXXXXXXXXWTSKRLEALLALQERDNIEYAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHGRREAGATASFLARSERERSKIDGSTSMVFTLFDGQQQICALGRHFQRNFLSREEWEGVVTVGPVMLIPYLLASLVVASDQDDFFDLLADLYFGHATHATGLLKVFDKDMRPFLGLLRLTLLPLPELGPGLIEGFVLRRSPSSKHLREQPAQR 577
+N PP R P+Q PSNGRKARE+GG+TC GCKASKVKC+R WPCTRC+RL QKCVLP K HL Q+ ++ R TPP S SH+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTLL AG+EG+LLALMH ERE +A+E GR M+AAF R+ REGRC R +ALVTLRMW RE + DV+WGA E VG ALGVS+ EL G G + G V + GE + SRLA + +E ++ G W +E L Q D+ E E G G F +R +RS++DGST+++F+LFDG++Q+CALGRHF+RNFL+R EWEG++T GP +L+PYL+ASLVV D++DFFD++ADLYFG A A+ LLKVFDKDMRPFL +LRL LLP E G GL+E LRRSP SKHLREQP QR
Sbjct: 5 TNRPPSTKRAPMQAPSNGRKAREEGGMTCEGCKASKVKCDRIWPCTRCIRLTQKCVLPVTKKRSFLALRG--------------------------------HLLNESAQSMRQS-------------RTTPPA----SASHAPD-------QAGPIPSPLFLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTLLDAGLEGSLLALMHVEREKRAREFGREMAAAFHRLHREGRCCRHKALVTLRMWRREAGARGCDVSWGASEEVGVALGVSEEEL-GERGRQDAKAMGWDVMETEGEAQGNPGRSRLAAAADVHVRELEKKEG---------------GQGPVCAW----IEGLATFQALDDGEGVWEEGAGLFSPA-------------------------------GEGPGGDHVGFWSRLHSKRSQVDGSTALLFSLFDGRRQLCALGRHFERNFLTRAEWEGLMTSGPPVLVPYLVASLVVGGDREDFFDVVADLYFGKALQASALLKVFDKDMRPFLAVLRLALLPPTEEGAGLVEVLTLRRSPCSKHLREQPGQR 467
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00250 ID=NO13G00250|Name=NO13G00250|organism=Nannochloropsis oceanica|type=gene|length=5948bp
CCCTTGCTCATCCATTTTCTTGATACAACTCAAGTATGCTTTAAGTAGAC
GAGGGGACGAAAAGGAAGCACGATGTGGCCAACGTGCCTTTCTCGACGAC
CACACAAATTCATCCCAAAGGGCCGGCGCTCAACCACCATCCTGCGACCA
AAATATCTCAACATTTTCTATCTCATATTATTTTCAACAATGCACGCCGC
ACATAGTACGATACATCGCCCCCAAAGCCACTGAAATCCCTCGCCGTGGC
ACTTTCTTTTCAAAGGTCGATCGCCCCACCGTCGGACCGAGCCGTCAGGA
GAAAGGCCGTGGAGCACCAGAATAGACCACCATATGCAGGGCAGGCATGC
CGATTATTAGCACCGCTTTGTGAACACACAACAGAACCGTGCATCCAGTC
AGTAGTAAAAGTCCTGTGCCACTTCTTCCCTCCCTGCCACTTCCCTTCCC
GACACTCGTTATCGACGCCATAAGTTATGGCCCGTAACTTTACTAATTAA
GTTGAGCAAAACGGCCACCCCCGTTGTGCACCTTTGACCGTATTTTGCCG
ATGAGACTGCTACAAGTTGCGTATCACAGCGAGTCTTGAAGAGGGGGACA
ATTATTGTTTTGGGACAATGTCAGGAAAGGTCAAATTTAAAGTCACTGGT
ACTTTTAGTGTGTCCGATCACTAGTCGGCCAAGAGCACTTCTCCGCTCAC
GAGACCGGCCGAATCGGTCGTTAAAAGTGGGGCAAGTTGGCCTTTTTGTG
TCCCTTCGTGTCCCAATACCCCCAGTTTCCGTCTCACTATGCAATTACCC
CTCACCAAAAACCACAGTTCACCAAGCACACTTCTGTGCTTGTACGACCA
TCCTGCACTCGTGCTTACACATCCTGGCACTAATTCCAGGTCTTTTTTCC
AACGTTCTGGGGCGATTGAACCGATAGCATAAGAAATAGGAGGCATGGTG
GCGACATACAGACCACTGAGCCAGGGCTCTGGTCGAGAGACTCTGTAGCA
GACCACAGCCTTTCCTTCCATTTGGAAAAGCGTATGACAGGGGGAGGCCC
CATGCACGGGACTTTGGCCTCCAACTACCCGCCGGGGCGCCCTCCTGTGC
AGCTACCCTCGAATGGCCGCAAAGCGCGAGAACAGGGAGGCTTGACCTGT
GCAGGGTGCAAGGCAAGCAAGgtgcgtaaaatgagtaaagttggagaaag
atcaagagaaaaagggaagatgagagagagccaacgtgggaggggaacat
ggaggaagcgcgagaagctgatttgtgcaatcaatgagggatggacacac
ggggcgattagcctatttagtcctcaaatgtccatccatgataagcgtac
tcaaggcatcacaaacatgcatgctgttggcagtgtggcatcatgagagc
ttgaaatcgaggggtatcaaggaatacaaggacagggaggtacgggcatg
catctttaccctgtctccgcctccttgcctggtgtagcgtcgccgcacga
ttctctgtgcgcagagaaaagtcattttattcccctatgtctctcaatat
gacctcgtccttcacggcgtcccaagtcacccatcttgcctttttaaaaa
aatgtcctgacttctcccacacttatgccgtttccttccttcccttcctc
cttgccccactcccttcctccctctcctcctccatccctcagGTCAAATG
CAACCGATCGTGGCCCTGCACACGCTGTGTCCGTCTCAACCAAAAGTGCG
TCCTCCCTCCACTCAAAAAACGCGCCCTTACCGCCGCCTCCTTTCAAGCT
CAGCAGCAACGTCAATGGCAGCAGCAGCGGCAGGAGGAGGAGCAGCAGCC
GCCCCACCCTCCACCGTGGCACCACCACCAGCAATATCTGCACCTGCACC
CGTCTCAATACCAAAACAGCGGCGAGAACGCAAGCCTCACATACCCACTC
CCTCGTCCTCCCCATCGGCGTGTAACTCCTCCTGTCCCCCCCCTTCCCTC
TCTCTCGCATTCCTCAAACCCCCCTCCTTCTGGCCGTGGTTTATTTCACC
CCCTGCCTCCCCTTATGTCCCCATCTCCACCTGCTCATCCTCCTCCTCCT
TCTCCTCCTTCTTCTCCTCCACTACCTGCTCATCCTCCTGCTCCCACTCC
CACCGCTGCTGCCGGTCTACACGTCCCCCGTACACTGCTCCAGGCCGGAA
TCGAGGGCACGCTGCTCGCACTCATGCACGCTGAGCGCGAGGCAAAAGCT
CAAGAGCTAGGGAGGATGATGTCGGCGGCCTTTATCCGAATTCAACGGGA
GGGACGTTGTAACCGACCCAGGGCCTTGGTCACCCTGAGAATGTGGTGGA
GGGAGATGCTGACGAAAGATAACGACGTCACCTGGGGCGCATTCGAAAGC
GTGGGGCAGGCCCTCGGGGTGAGCCAGGCAGAGCTGGAGGGAGGAGAAGG
GAATGGAGGGTATGGAAGCGCCGGTGGGGTCTTCGACATGTTGGGGGAGG
AGAAGGAGCAGCTGTCGCGCTTGGCCACGTCGACGGGTCCGCGGCAGGAG
AGGGGAAGGCAAAGTGGACTGGGATGTGGTAGCAATGGCAGCAGCAGCAG
CAGCAGCAGTAGTAGTAGTAGTAGTAGAGAAGCTTGGACTTCGAAACGTC
TCGAGGCGCTGCTGGCCCTCCAGGAGCGGGATAATATAGAGTATGCGGGA
GAGGCCGATGGGAGCGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCATCA
GCAGCAGCAGCAACAACAACCACACCCCCACCTCTCCATCAATCGTCCAC
AACCAGCTCCAGGAGCTCAGCACGGCCGGCGTGAAGCAGGGGCGACGGCC
AGCTTCTTGGCACGGTCGGAGCGCGAACGGAGCAAGATCGATGGGAGCAC
GTCCATGGTCTTCACCCTCTTCGACGGCCAGCAGCAGATATGCGCGCTCG
GTCGGCATTTCCAGCGAAACTTCCTCTCGCGGGAGGAGTGGGAGGGCGTG
GTCACCGTAGGACCCGTGATGCTGATCCCTTACTTGCTCGCCTCTCTTGT
GGTGGCCTCGGACCAGGATGATTTTTTCGACCTCCTCGCCGACCTTTATT
TCGGCCATGCCACCCACGCCACGGGTCTCTTAAAGGTGTTCGACAAGGAC
ATGCGTCCTTTTTTAGGTCTCCTCCGCCTCACCCTTCTCCCACTCCCTGA
GCTAGGTCCCGGCCTGATCGAAGGCTTTGTACTGCGCCGCTCTCCCTCCT
CGAAGCATCTGAGGGAGCAGCCGGCGCAACGCCTAATTAGTGCAGGGTCG
TCCACCCGGATCCAAGCTGCGGTTCATGGCCTCCCATCTTCCCTTCGTCG
TCATCATCATCATCATCAGCAGCATCAACATCAGCAGCAGAAGCAATTAG
GACCAGAGGGAAGAGACCGGGGCTTGCCGCAGCAGAGTATGATGGTGGCG
CAAGGCGAGTCGCTGCCTGTTGTTCGTGATCACAAGAGGAATGACAAAGG
GAATCGAGAAGAGAATCACCACAGCCGGAGGGAGGGAATAAGGAGGAAAC
AGAAGAAGGAGGAAGAGGGTGAAAGCGAGGGGGAAGGGGATAGCTGGCAG
ATGTCATACAAGATACGAGAAAAGCGCAAGCGTTCTGCACCTGCTGCTTG
GTCATCAACCCTGACTTCCCAATCTTCCTCTCCTTCCTCTTTTCCCAACT
CCACCTCCATCTCCTCCTCCTCCTCCTCCTCCGTGTACCCCACCAGGGTC
TCGTTCCATCATCAGTACCACCCACCGGACTCTAGTGCTCCCTTCTACTT
GCTAAGCAGCGGTCCTCCTCCTCCTCCTACTCTCCCTCCTGCCCCTCTCC
CTCCTGCTCCACCCTTTCCCCCTCACGGATATGCGGTGCATCTCCACCAC
TCCTACACAAAACTGCCTCATATGTCCCACCCTCTCCCGTACCAATGCCC
TCCACCATCACCTCCTCCTCCTCCCCCTCCCTATTACTACCCTCACTCCC
ATCCGCCGCCACATCACCAACCTACCCAGCAGCACGACCAGGGGCAGCAG
CAGTCGACCGGACCTCCACATACCTACTATCACTGCCCCCCCTACCAAAT
ACATCCCTCTTCCTCTTCCTCTCTCCACCATCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCGCCGCAGCAGCAGAAATTACAGCGACAACAAAAAGTACAGCAGCAGCA
GCAGCTTTACGGCATACCTCTTCCCGGTACCAATAACTCCCTATCCTACG
GGCCTTTCCCTCCATTTCACCCTCCAAGTTTGGTCAAGGAGTCCTCCCCC
CCTCCCTCCTCCTCCCCCTTCATTCCCTTCTACGCCCCCCGTTATGCTCC
ATCCTCCTCGTCCACACGCCCCGAGCGGCAGGCCTCAGGCAACTTCCCCA
TCTACCCCTCCCACCACGCAGCCCCACCCCCAGCACCACACCCACACCAT
CACCTTCACCAGCCTGCACCCTCCGGCTTTTCCACCTCCTCTCTTCACCC
ACTTTCCTACCAACCCCCTCCTCCTACTGTTGTACGCAACAATTCCGCCC
CATTCCTCCACACCCAAGACTGCAAACCGCCTCCAGAGCCTTCCTGCCCT
CCCTCCTCCTCGTCCTCCATCCCTCTCCTCTCTCCCTCTCATTCGCTCCA
TCCTACACAATCTCACCTGGTCATGCCCCCCCTTACTCCCCCCGTGCACC
ACCACACATCGCCAACCCTGCCAATGGACACGGCAAGGCAAGATAAGGAC
AAGGAAACAGAAGAAGTGACGAGCGATGTCGGTGAAAGAGGAGGAGGGGA
AGGTCTGCTTCCCACCTCATGCTCCCTTCATGCCCTGATGGCTGCAGCGG
TCGCTGTGACAGGAGGCAGCACGCGTCTACCCTCGCAAAAACACCATCCT
CCTCATCCTTCCCCTACTCTTCCTACTCCTCACCTACACCACCAGCAGCT
CACACAACCGCAACCGCAGCAGCAGCAAGAGCAGCAGCAACAGGAACAGC
GGCAGCAGGAAGAGGAGGAGGGGGAGGAGGAAGAGGGAAAAAAGGGAGAA
GGAGGAGGACAGACAGATGGTTTTCTGTCATCGTTATCGACGCGCCGTGG
GAAGGGGAAGGGGAAGGAAAAAGATGGAAAGAAGAAGGGGAGGAAGGACA
GATCAGGCAGTGAGGCAGCTTCGCACTTGATGCTGTTGAGTATGGCGGGG
GCATCGAGAGACGAGGCCGATGTGAAAGAAGACGGGTAGGACCGAAGGAA
AGGAGAGAGTAGCTGGTCTAGCCCCCTCCTGTCCTCTCGTCCTCCCCCTC
CCCCTCTTTTTCCTCCGCCTTTAATCCCTCCTTATCGTCTGCTCCTTTCC
ATTTCTGATTGGGAAATCCAGGAGAGAACAAGGAGAGAAAGAGGGAGTAA
AGGCGAAGGCTTTTTTTACGAAGAAAGTTTCACCGGGAAAGCGAGTGATG
CCCCTACATATTTGTAGAGAGAGATTTCGTCACGTCAAACATGCAAAGTA
TATCCATGTCTGTGTGTGTCTGATGCAATGTTGAGCAGGTCGAATGATCA
GAATTTGGAGCATGAAAATGAAAATGAAGATCATAGACTTGTTTGTGTGG
GGACGACGAAATGTTAAGCGTGCAAGCTGGAGGACCGGGCCCAAAAGTCG
TCCTTGTCTCTTAACAAAGGCAGGCCCCCATAATATGGCACGGCTCACTT
TCGGGAGGACGGGGGGAAGATGGGGAATGAAAACACTGCTGAGACATGTG
CATAAGGTGCAATATCAAAGAAAAACATTTAATCTCGACAATATTGATTG
GTTGAACACTTCTTGCAGCCATTTCTTAAAAGACAACCTGTCTGTGTGCT
GCAGACAGAATCGTATGGAACAAAGTGCGTTTCGGAACGTCAGCTGTC back to topprotein sequence of NO13G00250.1 >NO13G00250.1-protein ID=NO13G00250.1-protein|Name=NO13G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1245bp
MTGGGPMHGTLASNYPPGRPPVQLPSNGRKAREQGGLTCAGCKASKVKCN
RSWPCTRCVRLNQKCVLPPLKKRALTAASFQAQQQRQWQQQRQEEEQQPP
HPPPWHHHQQYLHLHPSQYQNSGENASLTYPLPRPPHRRVTPPVPPLPSL
SHSSNPPPSGRGLFHPLPPLMSPSPPAHPPPPSPPSSPPLPAHPPAPTPT
AAAGLHVPRTLLQAGIEGTLLALMHAEREAKAQELGRMMSAAFIRIQREG
RCNRPRALVTLRMWWREMLTKDNDVTWGAFESVGQALGVSQAELEGGEGN
GGYGSAGGVFDMLGEEKEQLSRLATSTGPRQERGRQSGLGCGSNGSSSSS
SSSSSSSREAWTSKRLEALLALQERDNIEYAGEADGSEEEEEEEQQQHQQ
QQQQQPHPHLSINRPQPAPGAQHGRREAGATASFLARSERERSKIDGSTS
MVFTLFDGQQQICALGRHFQRNFLSREEWEGVVTVGPVMLIPYLLASLVV
ASDQDDFFDLLADLYFGHATHATGLLKVFDKDMRPFLGLLRLTLLPLPEL
GPGLIEGFVLRRSPSSKHLREQPAQRLISAGSSTRIQAAVHGLPSSLRRH
HHHHQQHQHQQQKQLGPEGRDRGLPQQSMMVAQGESLPVVRDHKRNDKGN
REENHHSRREGIRRKQKKEEEGESEGEGDSWQMSYKIREKRKRSAPAAWS
STLTSQSSSPSSFPNSTSISSSSSSSVYPTRVSFHHQYHPPDSSAPFYLL
SSGPPPPPTLPPAPLPPAPPFPPHGYAVHLHHSYTKLPHMSHPLPYQCPP
PSPPPPPPPYYYPHSHPPPHHQPTQQHDQGQQQSTGPPHTYYHCPPYQIH
PSSSSSLHHQQQQQQQQQQQQQQQQQQQQQQQPPQQQKLQRQQKVQQQQQ
LYGIPLPGTNNSLSYGPFPPFHPPSLVKESSPPPSSSPFIPFYAPRYAPS
SSSTRPERQASGNFPIYPSHHAAPPPAPHPHHHLHQPAPSGFSTSSLHPL
SYQPPPPTVVRNNSAPFLHTQDCKPPPEPSCPPSSSSSIPLLSPSHSLHP
TQSHLVMPPLTPPVHHHTSPTLPMDTARQDKDKETEEVTSDVGERGGGEG
LLPTSCSLHALMAAAVAVTGGSTRLPSQKHHPPHPSPTLPTPHLHHQQLT
QPQPQQQQEQQQQEQRQQEEEEGEEEEGKKGEGGGQTDGFLSSLSTRRGK
GKGKEKDGKKKGRKDRSGSEAASHLMLLSMAGASRDEADVKEDG* back to top
|