NO13G00170, NO13G00170 (gene) Nannochloropsis oceanica

Overview
NameNO13G00170
Unique NameNO13G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1866
Alignment locationchr13:73367..75232 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:73367..75232 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00170 vs. NCBI_GenBank
Match: XP_005854474.1 (hypothetical protein NGA_0103002, partial [Nannochloropsis gaditana CCMP526] >EKU21882.1 hypothetical protein NGA_0103002, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.1 bits (248), Expect = 6.700e-18
Identity = 62/116 (53.45%), Postives = 75/116 (64.66%), Query Frame = 0 
Query:   35 EEENTDHRCVAAVDERLDQLTHSVLQDVIPGLERELHKVRGWLAMIEARDHAGTTTMSTSHGDKIAIKREGLSSGSGGGASGSDPHQSSLSWEKAITHHKLETLTTAVRVFKTALG 151
            + EN+D  C+A VD+RL+ L HSV QDVIPGLEREL+KVRGWLAM++AR   G   +S         K + LS  S G +      QS L+ +    HHKLETL TAVRVFKTALG
Sbjct:   26 DAENSDGCCLAGVDDRLEALAHSVSQDVIPGLERELNKVRGWLAMLDARQPVG--CISARANPSGLSKTQSLSERS-GESEAVPISQSELNLK---VHHKLETLNTAVRVFKTALG 135
[Close]
BLAST of NO13G00170 vs. NCBI_GenBank
Match: EWM22846.1 (hypothetical protein Naga_100293g5 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 1.400e-15
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 0 
Query:   35 EEENTDHRCVAAVDERLDQLTHSVLQDVIPGLERELHKVRGWLAMIEARDHAGTTTMSTSHGDKIAIKREGLSSGSGGGASGSDPHQSSLSWEKAITHHKLETLTTAVRVFK 147
            + EN+D  C+A VD+RL+ L HSV QDVIPGLEREL+KVRGWLAM++AR   G   +S         K + LS  S G +      QS L+ +    HHKLETL TAVRVFK
Sbjct:   26 DAENSDGCCLAGVDDRLEALAHSVSQDVIPGLERELNKVRGWLAMLDARQPVG--CISARANPSGLSKTQSLSERS-GESEAVPISQSELNLK---VHHKLETLNTAVRVFK 131
The following BLAST results are available for this feature:
BLAST of NO13G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854474.16.700e-1853.45hypothetical protein NGA_0103002, partial [Nannoch... [more]
EWM22846.11.400e-1551.79hypothetical protein Naga_100293g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL132nonsL132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR057ngnoR057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR056ngnoR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001907NSK001907Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00170.1NO13G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100293g5gene7603Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00170.1NO13G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00170 ID=NO13G00170|Name=NO13G00170|organism=Nannochloropsis oceanica|type=gene|length=1866bp
GGAAGAGATTCCCTTTGATCCTGTGGTTATGGGAACCAGATAATAGGATG
GTGAGTCCGTGGGCGTTTTGGTCGTGGGTTCTGAGCGCAGCGGCTGCATT
TCGTATACACGTCGCCTTTCGAGTCGCTCACGCTCGTCGCTCGTTCCGTG
ACTGAAGGACATATGTGAAAGGGCACGTGATTATCTGACCCACAGCACAA
GACAAGGGACAGGCTCCTCATTTTGGGTTCACAGGCGTGAGGTTGTATAT
TTGCACATTGTTTGCTTGGTTCTGGAGTCGGCAGGGCAACCCTATTCGTA
AATATTATCCGGCAGAGGCATGCCCCAGCGAGACTGAATCTGAACAACAC
AACACATCAATCAAGCGAAAAGGAACGCAGGCAACATAATAATGACATCC
CTCTCGCACTCAGCCTCTTCCGACCGTCACACGCGTGTTTCTGTGCCGGA
GGAACGTACTGCCCATGGCTTCCGGGGCTGCCCCCCTACCGAAGAGGAAG
AAAACACAGACCATCGCTGCGTCGCCGCGGTCGACGAGCGCCTCGATCAG
TTGACGCACTCGGTTTTGCAAGACGTCATTCCAGGACTTGAGCGTGAGCT
GCACAAGgtgaggtggaatcatggtgggtggggaaggaaaaagcactaag
caataagcaaataagcaaatctgccatcttgtagGTACGGGGCTGGCTTG
CCATGATCGAGGCGCGGGACCACGCCGGCACCACTACCATGTCTACCTCA
CATGGCGACAAAATAGCTATCAAACGTGAAGGGCTTTCCAGTGGCAGCGG
TGGTGGGGCGAGCGGCAGCGACCCTCATCAATCCTCTCTCTCATGGGAAA
AAGCCATTACACATCACAAGCTCGAGACATTAACCACCGCCGTCCGCGTA
TTCAAGgtatgtcctacgattacattaaatgaaatggaaaaaaaagaaaa
aaaagataaagaatcctaagcataggtgttaaaaaaaaactactcaccca
tcatcacagACGGCACTTGGTCCCCTGCAAAAGCCGCCCCACGAAACGAC
AAACCCCTATCAGTATTAGCCGGAAAGGTATGATCACGTCTAAGAAGTAG
ATGATGGCTAGAAATAAGTTGGAACATCTCCGCCCCCCAAAAAAACTTAT
TTATGATTCGCTTTTATGTCTTGCCCACCCCCTGTCACAAATTCTAAAAT
GGAAGCTGACTGTGTCGATTTGTCGCGACTGATTCCGATTGCTTGCAGTA
TATAGATCCCAAGGTCTTAAAGAAGCGGTGTTTGCGAGGGGTTATGGCCT
AGTGGTATGGCGTCCGCTTTGCAAGCGGAAGATCGAGGGTTCAAACCCCT
CTAGCTCCATGATGATATTTTTTTCCCCGATGAGTAGGCACTTTCTCTGT
CCTTTGTTGTTTGTCCCTGTTACTTTAACCTCTATTTCTAAATAACACAC
GATGTTGTGAACGGCCTATTAATTTATGACAGTGCGGCCCATGTCAGGTT
GTTTTTCCCATCTTATTCCCATTCCAGCCCGCACGCGTCCATTCAATGGG
AGGCAGGGAAGAATATGTCTGGAGGAGTCAGTGGAGTTTAAAAAGTCACA
TCCTTCACCTGCGTGCATAAAGGAAGAAAAAACAAAGAGACTTGGAAGCT
TATGCTCTCAGGCAGAATCGAACCGCCGTTTCTTCGGGATTTGCTTCTTT
GACAAGCCACAACGAAGTGTCCTTCATGTCGACCGGGTGAATGGGCCGTA
ATACCGCCTTCGACCCGACCGGAACCGACCTACTAGACGATGAAAGCCCT
CTCGCCGCGGGCTCGAACCGCCGCAGCGCCGCGAGGGCGACTGCTGTCCC
CACTGGACTAGCGACA
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protein sequence of NO13G00170.1

>NO13G00170.1-protein ID=NO13G00170.1-protein|Name=NO13G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTSLSHSASSDRHTRVSVPEERTAHGFRGCPPTEEEENTDHRCVAAVDER
LDQLTHSVLQDVIPGLERELHKVRGWLAMIEARDHAGTTTMSTSHGDKIA
IKREGLSSGSGGGASGSDPHQSSLSWEKAITHHKLETLTTAVRVFKTALG
PLQKPPHETTNPYQY*
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Synonyms
Publications