NO13G00090, NO13G00090 (gene) Nannochloropsis oceanica

Overview
NameNO13G00090
Unique NameNO13G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2081
Alignment locationchr13:27380..29460 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:27380..29460 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00090 vs. NCBI_GenBank
Match: EWM20132.1 (hypothetical protein Naga_101658g1 [Nannochloropsis gaditana])

HSP 1 Score: 68.2 bits (165), Expect = 4.600e-8
Identity = 82/265 (30.94%), Postives = 120/265 (45.28%), Query Frame = 0 
Query:    1 MATFRLPF-LPTSFSLPAAASTPITSHSLDMNPPSQPVISSSSISCKQSLY---SSSAMASGLSVASNVPQPERDEDWLY-QHRLCETAMLVTRLVFCDGEEEECNADQDSSAXXXXXXXXXXXXXXXRVGRGRSARSAEAVRQVEAATREWYAPFRPNKGHNNSRAPIASGNDVSSSFHLPSAPCAAGELASPFSPSSPPDLGYSSMTTTIATINTYVRTSSSRKEGWME--GVSKRAFYKRRRKARQAAEYAIDCVLQEVESR 259
            MAT   P   P+ FS    A  P  +   D++  +    S+ S       Y   +SS M S +S  +N+   ++D++ L+ QH LCETAMLVTRLVF  GEEE+    +  S                 + R +    A   R   AA     APFR  K     R  +   +D     H    PC   E+A+  SP+       + +   +   N+   +      G ++  G+SKRAFYKRRRKARQA E+ +D +L+ V ++
Sbjct:    1 MATISTPLHKPSGFSTRDLAHPPFLA---DIDSSASTYKSNPSYDLPYCFYPTITSSHMRSDVSSTNNMCDIQQDDEELFHQHNLCETAMLVTRLVF-RGEEEQ----EGKSHGCGVTSLRVRRREKGVMSRQQETEGAYRGRATSAAA-ALVAPFRARKIRQRMRYEV---HDQPKENH----PCM--EMAACQSPAKDVTAAGAFVGALVDVPNSENDSGKEESNGRVQGSGISKRAFYKRRRKARQAVEFIVDILLEGVAAQ 247
The following BLAST results are available for this feature:
BLAST of NO13G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20132.14.600e-830.94hypothetical protein Naga_101658g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL132nonsL132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR017ncniR017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR056ngnoR056Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00090.1NO13G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|617427gene_11825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00090.1NO13G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00090 ID=NO13G00090|Name=NO13G00090|organism=Nannochloropsis oceanica|type=gene|length=2081bp
CTTGAATTTGGGGGCAAGCCCTAATACAGAACATTGCACCCCATCCTCGA
CCAAGCACTATGCTGAACACATTAATTGTGAGATATTTCTATGCAAACCG
CATTTCATGGACTTCCATCTCGCGTGAATAAAGAATTTGGGGCACTCCAA
TTAAGGATAACCATAAGCTCAAAAAAGAGCACACCGGCCCATTAAAAGCA
GCATCGTTTCGATCGACACCGTTTCCCTGTCCCCTTCCTTCTGTACAACA
AACGACTGTGCCTTCCTTCCAAGCTATTGGCTGATCCCCATTATCTTCTC
AAGCTCCCTGTTACCGACATCTATTTTCTTGTATTCACCTGGGATTTTCA
GCTGGCACACCTTAAACGCAAACTTACACGGTCTCCCCAACAGACATCCA
ACGCATCGGTTGCACTCCGATACAATTTGTTCTTCCTGGTATATGGATCT
CACAGTGGCACTTACGCCATTCCCTTAACCGACAAGTACTCACAGTGACA
CAAACACCACTCTTGCCCTTCGACAAACAGGAATTGCAATCGCGCCACAC
GCATCATGGCGACTTTCCGCTTGCCTTTCCTTCCAACATCTTTCTCTCTG
CCGGCGGCCGCTTCCACCCCCATCACGTCTCATTCTCTGGACATGAATCC
TCCTTCCCAACCTGTCATTTCATCCTCTTCGATATCTTGCAAGCAGAGCC
TGTATTCATCCTCCGCAATGGCCTCTGGTCTCTCTGTAGCCTCGAACGTC
CCACAGCCGGAGCGCGACGAGGACTGGCTCTACCAACATCGCCTCTGCGA
AACTGCTATGCTTGTTACCCGTCTTGTATTTTGCGATGGAGAAGAGGAGG
AATGTAACGCTGACCAAGATTCCTCCGCCGCCGGCTCAATGCTTCTGGGC
GGCGATACTAACAAGAGAAGAAGAAGAGTAGGACGGGGACGCTCGGCGCG
ATCAGCAGAAGCGGTACGACAAGTAGAAGCTGCTACCCGCGAATGGTATG
CACCGTTCCGACCTAATAAGGGTCACAACAATTCTCGCGCCCCCATCGCT
AGCGGTAATGACGTGTCTTCCTCTTTCCATCTCCCCTCTGCGCCCTGTGC
TGCTGGAGAGCTTGCTTCTCCTTTCTCTCCCTCTTCTCCTCCCGACCTGG
GCTACTCCTCCATGACGACCACTATAGCAACGATAAATACGTATGTCAGG
ACCAGCAGCAGTAGGAAGGAAGGATGGATGGAGGGTGTGAGCAAGCGGGC
TTTCTACAAACGTCGACGAAAGGCTCGCCAGGCGGCGGAATACGCAATAG
ATTGCGTGCTACAGGAGGTGGAGAGTCGAGTCGTGGGGCTTGCGGGAATT
GAAAGCCAGGAGGAATGAGCTGGAGTAAGGAAGAGGGGGAATAATGCTTG
TGGGCAAGGAGCGACATGGGTCAAGGGGGAAGGACGAGGGTGTGTGTGTG
CGCGCATTTGAGTTGCTGGTGAATGCGTGGCTGAAACCTCATAACATGGG
CGCGGAAAGGATACAGGGTGAATATTGGAGGGGAAAAGGATGGAGGATTA
CAGAACGAGACAGAGAATTTTGGGAGTAAGAGACGGACATGCGTGCGTGC
ACGTGCCTGTGTGTGAAAGCAAGCAAGATGCTTATTCTACCGTCTCACCG
ACCCGACGTGAGGGTCAAAAAAGAGATAATGGGATCAAGGCAAATCACGA
CGTGAATTTTCAAATAAAAGATTACAAGAATCCATCCCTGTATTTCAAAA
AGATTAGAAACAATGCGTTAATTAATTCGGAGGTGCATTTCCACCCGTCC
GAGGGGGCGATGATCCGAGTGTGTACGGGGGACGATCCATCAGTAGGAGG
AAGAAGCGAGAGAAGACGAGGCGGACGGATGACGCCGGAGGAAGTAGAAA
GGGAGAAAGGGACAAACCACACACACATATAAATTTTGTCATCAAAAGCA
ACATGAAGTGGAGTCGATGACAGGTACTCGGATGCATGGTCAGTAGGAAA
GGAAAGGGAGATGGAGAGAGAGGAGAACACATCCCACGCATCATTAAAAT
GGAAAAAAAAATTACATATGATTCCAGGAAT
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protein sequence of NO13G00090.1

>NO13G00090.1-protein ID=NO13G00090.1-protein|Name=NO13G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MATFRLPFLPTSFSLPAAASTPITSHSLDMNPPSQPVISSSSISCKQSLY
SSSAMASGLSVASNVPQPERDEDWLYQHRLCETAMLVTRLVFCDGEEEEC
NADQDSSAAGSMLLGGDTNKRRRRVGRGRSARSAEAVRQVEAATREWYAP
FRPNKGHNNSRAPIASGNDVSSSFHLPSAPCAAGELASPFSPSSPPDLGY
SSMTTTIATINTYVRTSSSRKEGWMEGVSKRAFYKRRRKARQAAEYAIDC
VLQEVESRVVGLAGIESQEE*
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Synonyms
Publications