NO13G00080, NO13G00080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO13G00080 vs. NCBI_GenBank
Match: EWM22860.1 (hypothetical protein Naga_100988g2 [Nannochloropsis gaditana]) HSP 1 Score: 274.6 bits (701), Expect = 1.200e-69 Identity = 144/271 (53.14%), Postives = 181/271 (66.79%), Query Frame = 0 Query: 280 DSAVHSYRGFCKGMAQIHAQGRLDFKKALEFSARVDVLSYAKGVDATYGINQALRNLVISSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAMCTRVQHGPPTASDLTFGSSSAFPLSSSSSAFADGGSHSDLAHLPLFARLARDRTACVMVFRGNDYVCDVTCNARMSSLFMSTQEVQGLSSQTGFACSAFWSRFIDAEDTETLLAGAADLILGRHGRRHGRSYFDQVVGVVTREGRRGRALSTLGWHSSKALVHTLILRLIPLGFQDL 551 +++++ RGFC GM ++ A+ R D KKA++FSARV+VLSY G+DA YGINQALR++++S+P SA+ RV HGPPTA L + SD A LPLF RLARD TAC+MVFRGND+V DVTCNARMSSLFMST+E++GL QTGFAC AFWS F+D D E LLAG+ADL+L + + GRS FD++VGV TR+GR+GRA++TLGWHSS+ +V TLILRLIPLGF DL Sbjct: 257 NTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNP---DMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALM-------------------STQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQ--GRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGFHDL 503
BLAST of NO13G00080 vs. NCBI_GenBank
Match: XP_005852550.1 (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >EKU23282.1 hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 271.2 bits (692), Expect = 1.400e-68 Identity = 153/304 (50.33%), Postives = 187/304 (61.51%), Query Frame = 0 Query: 288 GFCKGMAQIHAQGRLDFKKALEFSARVDVLSYAKGVDATYGINQALRNLVISSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAMCTRVQHGPPTASDLTFGSSSAFPLSSSSSAFADGGSHSDLAHLPLFARLARDRTACVMVFRGNDYVCDVTCNARMSSLFMSTQEVQGLSSQTGFACSAFWSRFIDAEDTETLLAGAADLILGRHGRRHGRSYFDQVVGVVTREGRRGRALSTLGWHSSKALVHTLILRLIPLGFQDLDVG--ETGRXXXXXXXXXXXXXXXXXREVGGRALMVEAIHE 590 GFC GM ++ A+ R D KKA++FSARV+VLSY G+DA YGINQALR++++S+P SA+ RV HGPPTA L + SD A LPLF RLARD TAC+MVFRGND+V DVTCNARMSSLFMST+E++GL QTGFAC AFWS F+D D E LLAG+ADL+L + + GRS D++VGV TR+GR GRA++TLGWHSS+ +V TLILRLIPLGF D+ VG E GR R VGG +VE + E Sbjct: 287 GFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNP---DMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALM-------------------STQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQ--GRSSIDRIVGVTTRDGRWGRAMATLGWHSSEDVVQTLILRLIPLGFHDVPVGVREEGR------EGGRVGARDSRRVVGGEQAVVEDVTE 560
BLAST of NO13G00080 vs. NCBI_GenBank
Match: XP_005854455.1 (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >XP_005854696.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21661.1 hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >EKU21901.1 hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 73.2 bits (178), Expect = 5.500e-9 Identity = 79/296 (26.69%), Postives = 123/296 (41.55%), Query Frame = 0 Query: 268 FPWSSYLALTDTDSA--VHSYRGFCKGMAQIHAQGRLDFKKALEFSARVDVLSYAKGV-DATYGINQALRNLVISSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAMCTRVQHGPPTASDLTFGSSSAFPLSSSSSAFADGGSHSDLAHLPLFARLARDRTACVMVFRGN-DYVCDVTCNARMSSLFMSTQEVQGLSSQTGFACSAFWSRFIDAEDTETLL-AGAADLILGRHGRRHGRSYFDQVVGVVTREGRRG-------RALSTLGWHSSKALV-HTLILRLIPLGFQDL 551 FP L L D+ SA +H+ G +A++ AQG LD++K A + S A+GV D T G+ L +L+ + P P + G P + + + GG D + L +LA D AC +V N + V CN RMS LF+S++E++GL SQT A +FW RF+ L+ A +A ++ H D ++ + +G + L+T+G ++ + LILRL+P G DL Sbjct: 283 FPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ-----------------------------------AFAPKRRKAKSGGVGERGPPAGGAQGNSAGG---DPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTH-----TPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDL 535
BLAST of NO13G00080 vs. NCBI_GenBank
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana]) HSP 1 Score: 73.2 bits (178), Expect = 5.500e-9 Identity = 79/296 (26.69%), Postives = 123/296 (41.55%), Query Frame = 0 Query: 268 FPWSSYLALTDTDSA--VHSYRGFCKGMAQIHAQGRLDFKKALEFSARVDVLSYAKGV-DATYGINQALRNLVISSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAMCTRVQHGPPTASDLTFGSSSAFPLSSSSSAFADGGSHSDLAHLPLFARLARDRTACVMVFRGN-DYVCDVTCNARMSSLFMSTQEVQGLSSQTGFACSAFWSRFIDAEDTETLL-AGAADLILGRHGRRHGRSYFDQVVGVVTREGRRG-------RALSTLGWHSSKALV-HTLILRLIPLGFQDL 551 FP L L D+ SA +H+ G +A++ AQG LD++K A + S A+GV D T G+ L +L+ + P P + G P + + + GG D + L +LA D AC +V N + V CN RMS LF+S++E++GL SQT A +FW RF+ L+ A +A ++ H D ++ + +G + L+T+G ++ + LILRL+P G DL Sbjct: 283 FPVDPSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ-----------------------------------AFAPKRRKAKSGGVGERGPPAGGAQGNSAGG---DPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTH-----TPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDL 535
BLAST of NO13G00080 vs. NCBI_GenBank
Match: EWM20727.1 (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana]) HSP 1 Score: 68.6 bits (166), Expect = 1.300e-7 Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 0 Query: 418 LFARLARDRTACVMVFRGN-DYVCDVTCNARMSSLFMSTQEVQGLSSQTGFACSAFWSRFIDAEDTETLLAGAADLILG 496 L ARL +D TAC +V RG + V CN RM++LF+ E+QGL QTG SAFW RF+ E +L A L+LG Sbjct: 27 LAARLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRFVCNESLLSLYAALVTLMLG 105 The following BLAST results are available for this feature:
BLAST of NO13G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G00080 ID=NO13G00080|Name=NO13G00080|organism=Nannochloropsis oceanica|type=gene|length=4488bpback to top protein sequence of NO13G00080.1 >NO13G00080.1-protein ID=NO13G00080.1-protein|Name=NO13G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1042bpback to top Synonyms
Publications
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