NO12G03970, NO12G03970 (gene) Nannochloropsis oceanica

Overview
NameNO12G03970
Unique NameNO12G03970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1366
Alignment locationchr12:1137870..1139235 +

Link to JBrowse

Properties
Property NameValue
Description14 kDa subunit splicing factor 3b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1137870..1139235 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034150SF3B14_RRM
IPR000504RRM_dom
Homology
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: EWM25645.1 (14 kda subunit splicing factor 3b [Nannochloropsis gaditana])

HSP 1 Score: 244.6 bits (623), Expect = 1.600e-61
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0 
Query:    1 MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRVNLEKQRKEVEELRKMVDAGR 122
            MADAANFRQRNRLSPDVTR+LYVRNLPFKLSS+ELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR+NLEKQRKEVEELRKMVDAGR
Sbjct:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGR 121
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: CCA19265.1 (premRNA branch site protein p14 putative [Albugo laibachii Nc14])

HSP 1 Score: 157.9 bits (398), Expect = 2.000e-35
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 0 
Query:    4 AANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRV---NLEKQRKEVEELRK 116
            A   R   RL P+V R+LYVRNLPFK+SS+E+YDIFGKYG IRQIR+G  NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R     LEKQ++E+E LR+
Sbjct:    3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGGQLEKQKQELEGLRQ 117
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: CCI50423.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 157.9 bits (398), Expect = 2.000e-35
Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 0 
Query:    4 AANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRV-----NLEKQRKEVEELRK 116
            A   R   RL P+V R+LYVRNLPFK+SS+E+YDIFGKYG IRQIR+G  NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R       LEKQ++E+E LR+
Sbjct:    3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGAGGQLEKQKQEIEGLRQ 119
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: GAY00372.1 (pirin, putative [Pythium insidiosum])

HSP 1 Score: 155.2 bits (391), Expect = 1.300e-34
Identity = 72/115 (62.61%), Postives = 93/115 (80.87%), Query Frame = 0 
Query:    8 RQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR-------VNLEKQRKEVEELRK 116
            R   RL P+V R+LYVRNLPFK+SS+E+YDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q R       + LEKQR+E+++L++
Sbjct:  286 RGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPNKMQNRKGASNGALELEKQRQELDQLKQ 400
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: XP_009831993.1 (pre-mRNA branch site p14-like protein [Aphanomyces astaci] >ETV78412.1 pre-mRNA branch site p14-like protein [Aphanomyces astaci])

HSP 1 Score: 154.5 bits (389), Expect = 2.200e-34
Identity = 68/114 (59.65%), Postives = 94/114 (82.46%), Query Frame = 0 
Query:    1 MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRVNLEKQRKEVEELR 115
            M+++   R  +RL P+V R+LYVRNLPFK+SS+E+YDIFGKYG IRQIR+G ANE RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+   +  K +++  +++E+ +L+
Sbjct:    4 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVANETRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRVHKSMDVNAKQQELSQLK 117
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: XP_008866577.1 (pre-mRNA branch site p14-like protein [Aphanomyces invadans] >ETW05139.1 pre-mRNA branch site p14-like protein [Aphanomyces invadans])

HSP 1 Score: 154.5 bits (389), Expect = 2.200e-34
Identity = 67/114 (58.77%), Postives = 94/114 (82.46%), Query Frame = 0 
Query:    1 MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRVNLEKQRKEVEELR 115
            M+++   R  +RL P+V R+LYVRNLPFK+SS+E+YDIFGKYG IRQIR+G +N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+   K  K +++  +++E+ +L+
Sbjct:    1 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVSNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASKMHKNMDVNAKQQEISQLK 114
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: XP_009522376.1 (hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae] >EGZ19659.1 hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae])

HSP 1 Score: 154.1 bits (388), Expect = 2.900e-34
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 0 
Query:    8 RQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---VNLEKQRKEVEELR 115
            R   RL P+V R+LYVRNLPFK+SS+ELYDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+   K Q+R   V+L+KQ++E+++L+
Sbjct:    9 RGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKAAVDLDKQKQELQDLK 118
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: XP_002902104.1 (pre-mRNA branch site protein p14, putative [Phytophthora infestans T30-4] >EEY56776.1 pre-mRNA branch site protein p14, putative [Phytophthora infestans T30-4])

HSP 1 Score: 154.1 bits (388), Expect = 2.900e-34
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 0 
Query:    8 RQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---VNLEKQRKEVEELR 115
            R   RL P+V R+LYVRNLPFK+SS+ELYDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+   K Q+R   V++ KQ+KE+++L+
Sbjct:   47 RGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKGAVDINKQKKELQDLK 156
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: XP_024580279.1 (pre-mrna branch site p14-like protein [Plasmopara halstedii] >CEG43910.1 pre-mrna branch site p14-like protein [Plasmopara halstedii])

HSP 1 Score: 153.7 bits (387), Expect = 3.800e-34
Identity = 72/115 (62.61%), Postives = 97/115 (84.35%), Query Frame = 0 
Query:    4 AANFRQRN-RLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---VNLEKQRKEVEELR 115
            +A+ R+ N RL P+V R+LYVRNLPFK+SS+ELYDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+   K Q+R   V++ KQ++E+++L+
Sbjct:    2 SAHVRRGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKTAVDINKQKQELQDLK 116
[Close]
BLAST of NO12G03970 vs. NCBI_GenBank
Match: OAO18114.1 (Pre-mRNA branch site protein p14 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 153.3 bits (386), Expect = 4.900e-34
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = 0 
Query:    8 RQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRVNLEKQRKEVEELR 115
            R   RL P+V RILYV+NLP+K++++ELYDIF KYG IRQIR+G   E RG AFV+YEDIYDAKDAL+HL+GFNV GRYLVVLYF   +  K V+LEK+ KE+EEL+
Sbjct:    3 RSSGRLPPEVNRILYVKNLPYKITNEELYDIFAKYGDIRQIRIGDTKETRGTAFVVYEDIYDAKDALDHLSGFNVGGRYLVVLYFQATRANKTVDLEKKEKEIEELK 109
The following BLAST results are available for this feature:
BLAST of NO12G03970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25645.11.600e-6197.5214 kda subunit splicing factor 3b [Nannochloropsis... [more]
CCA19265.12.000e-3566.09premRNA branch site protein p14 putative [Albugo l... [more]
CCI50423.12.000e-3564.96unnamed protein product [Albugo candida][more]
GAY00372.11.300e-3462.61pirin, putative [Pythium insidiosum][more]
XP_009831993.12.200e-3459.65pre-mRNA branch site p14-like protein [Aphanomyces... [more]
XP_008866577.12.200e-3458.77pre-mRNA branch site p14-like protein [Aphanomyces... [more]
XP_009522376.12.900e-3464.55hypothetical protein PHYSODRAFT_312714 [Phytophtho... [more]
XP_002902104.12.900e-3464.55pre-mRNA branch site protein p14, putative [Phytop... [more]
XP_024580279.13.800e-3462.61pre-mrna branch site p14-like protein [Plasmopara ... [more]
OAO18114.14.900e-3466.36Pre-mRNA branch site protein p14 [Blastocystis sp.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010390NSK010390Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03970.1NO12G03970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593032gene_5578Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100037g13gene4872Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03970.1NO12G03970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03970 ID=NO12G03970|Name=NO12G03970|organism=Nannochloropsis oceanica|type=gene|length=1366bp
CCTTGGCTTAGAATTAGAGCCTGTCGCAGGTAGTGCGTGGGATGGCGGCG
TGAAGAGGGTGAGAGTTTTGTCTGGCGCGGGTTTGGACGCGTCTCGTCAC
GGGCGACGTTGCTCGTGTCTCTCGTCGCAGCGGTAAGGAGGGACCACCCG
TTGTGGATTGTGAAGCCCATCGCAGCGGCAAGGGGCTGAATAGCAGCGTT
TTATGTCTGCTTGGTAAGGTGGGGGGCATAACGCAGCCGATAGCGGTGGC
TGTAGGTGGTTTGTGATAGACAGAATTGCCTCGTCTGTTGTTTGGTGATC
GGCTTGGCGACGAGGGAGGACACGTAGATTGAGACATAAATGATGACCGG
AGACGCCCAGCTTCTCCCGTTCACGCCCTGTCCTGTTGTCTGTTGCCTGG
CCTCATAAGCCGGGTTTGTCATCTGTCTATGGCTGTGTGGCTTGTGAGTG
CATGAAAGTGTGCTAGTGCTCCCTGCCCAGCCTCATCCCCCGTACCAGCC
TCCCTTGCCCCGCTCTCACCAAAAACCAAACGCATCATCGTCACCCTCCA
TCCTTCCTCCTTCCGTGTCGCACCCAACATCACAACACAGATGGCCGACG
CCGCTAACTTCCGGCAGCGGAACCGCCTGTCGCCCGACGTGACCCGCATC
CTGTACGTGCGTAACCTGCCCTTTAAACTCTCTTCGGATGAACTTTACGA
TATCTTTGGCAAGTACGGTCCAATCAGACAGgtacgtcttgagagttttg
gggtgggagggagagaacgcagcaggagggtgagtgtgaagggatgtgat
gccatacatgcgagtttcctgcacttttgcatatcattgccggatttgag
tgactcgcgcggtcaatggggcatgttggcgtgtatcgccccttggttct
gctctcttctccggtttacggcaacgagtcacggttcccctacctctttt
gctcacggcacggaatactttcctccttttctcgtgtttccgcatcctcc
ctttccctccccctacgcccagATACGCGTTGGTGCCGCAAACGAGAATC
GCGGCAAGGCCTTTGTCATCTACGAGGATATTTACGATGCCAAGGACGCC
CTCGAGCACTTGAATGGCTTCAACGTATGCGGCCGGTATTTGGTGGTCCT
GTACTTTCACCCAGAGAAGGAACAGAAGCGAGTGAACCTGGAGAAGCAAC
GGAAAGAGGTCGAGGAGCTACGGAAAATGGTCGATGCCGGCAGGGGGAAA
TGAGGAGCAGACGAGGGAGCAGAAGAGGATGTGGGTGAAAATGTACATGG
ATGATCAAATGAAAAGGAAAAAATATCGAACGCGCGAAGTTTTGGAGAGA
AAAAAGTATAGAAGGA
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protein sequence of NO12G03970.1

>NO12G03970.1-protein ID=NO12G03970.1-protein|Name=NO12G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MADAANFRQRNRLSPDVTRILYVRNLPFKLSSDELYDIFGKYGPIRQIRV
GAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR
VNLEKQRKEVEELRKMVDAGRGK*
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Synonyms
Publications