NO12G03900, NO12G03900 (gene) Nannochloropsis oceanica

Overview
NameNO12G03900
Unique NameNO12G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr12:1098946..1099710 -

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Properties
Property NameValue
DescriptionSulfhydryl oxidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1098946..1099710 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016972thiol oxidase activity
GO:0016972thiol oxidase activity
GO:0016971flavin-linked sulfhydryl oxidase activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036774ERV/ALR_sulphydryl_oxid_sf
IPR017905ERV/ALR_sulphydryl_oxidase
Homology
BLAST of NO12G03900 vs. NCBI_GenBank
Match: XP_005853403.1 (augmenter of liver regeneration, partial [Nannochloropsis gaditana CCMP526] >XP_005855096.1 augmenter of liver regeneration, partial [Nannochloropsis gaditana CCMP526] >EKU21266.1 augmenter of liver regeneration, partial [Nannochloropsis gaditana CCMP526] >EKU22957.1 augmenter of liver regeneration, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 244.2 bits (622), Expect = 4.400e-61
Identity = 122/244 (50.00%), Postives = 146/244 (59.84%), Query Frame = 0
Query:   11 NLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKQQSPASFVSSINSSKKEKIYVIEPGEGKKKAAP 255
            N LAAVEEECEHAACK+MLD+L                                  RK HCPLD + LGD TWG+LHSTAAYYP++PTPQEQSLAAGL+HGIAGLYPCT+CR DF+ C++  PPRVE+REAF+VWVC+QHN VN+KLGK +FPC+L +LD+RW+ GE RCWGE+                                   TKQQ       S  + +K K Y+IEPG GKKK  P
Sbjct:   25 NPLAAVEEECEHAACKSMLDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNHCPLDKDTLGDMTWGVLHSTAAYYPESPTPQEQSLAAGLVHGIAGLYPCTYCRTDFEECIQALPPRVESREAFSVWVCKQHNLVNEKLGKPVFPCDLKSLDRRWKTGEPRCWGEK---------------GGEDNNHRQAGADLTPAGAHTKQQEHIPSAPSPLTRRKSKFYIIEPGVGKKKTGP 253          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: EWM25641.1 (augmenter of liver regeneration [Nannochloropsis gaditana])

HSP 1 Score: 239.6 bits (610), Expect = 1.100e-59
Identity = 121/244 (49.59%), Postives = 143/244 (58.61%), Query Frame = 0
Query:   11 NLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKQQSPASFVSSINSSKKEKIYVIEPGEGKKKAAP 255
            N LAAVEEECEHAACK+ML                                     RK HCPLD + LGD TWG+LHSTAAYYP++PTPQEQSLAAGL+HGIAGLYPCT+CR DFQ C++  PPRVE+REAF+VWVC+QHN VN+KLGK +FPC+L +LD+RW+ GE RCWGE+                                   TKQQ       S  + +K K Y+IEPG GKKK  P
Sbjct:   88 NPLAAVEEECEHAACKSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNHCPLDKDTLGDMTWGVLHSTAAYYPESPTPQEQSLAAGLVHGIAGLYPCTYCRTDFQECIQALPPRVESREAFSVWVCKQHNLVNEKLGKPVFPCDLKSLDRRWKTGEPRCWGEK---------------GGEDNNHRQAGADLTPAGAHTKQQEHILSAPSPLTRRKSKFYIIEPGVGKKKTGP 316          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: CCA15302.1 (augmenter of liver regeneration putative [Albugo laibachii Nc14])

HSP 1 Score: 158.3 bits (399), Expect = 3.200e-35
Identity = 72/174 (41.38%), Postives = 107/174 (61.49%), Query Frame = 0
Query:    8 PSQNLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCW 182
            P  N  +  +  C   ACK+ +D+ +   G  S  KG   R++S  +P       EA  RK  CPLD   LG +TWG++HS   YYP+ P+ + Q  A   +  +A +YPC+ C +DF+  + + PP+VE+R+AF++W+CEQHN VN+K+GK LF CN++TL +RWR G+  CW
Sbjct:    3 PHLNSKSDADPNCVEPACKSKVDLFRHFVG--SDKKGK--REASSLTP------QEAEQRKIECPLDREELGRSTWGLMHSIGVYYPEKPSEEYQRHARSFVEALALMYPCSDCAEDFRKEIAKCPPKVESRQAFSMWLCEQHNLVNEKIGKPLFQCNMSTLSERWRTGKKECW 166          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: XP_009519041.1 (hypothetical protein PHYSODRAFT_284799 [Phytophthora sojae] >EGZ23753.1 hypothetical protein PHYSODRAFT_284799 [Phytophthora sojae])

HSP 1 Score: 157.1 bits (396), Expect = 7.000e-35
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   17 EEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            +  C   AC   +D  KS+ G        AT+ +++  P+              CPLD   LG+ATWG+LHS   YYPD P+P+ Q+ A   I  +A +YPC HC  DFQ  + ++PPRVE+R  F++W+CEQHN VN K+ K LF C +  L++RWRKG+  CWGE+
Sbjct:    7 DPNCVEPACADKMDFFKSSMGK------KATKPAAQPKPATD------------CPLDRQELGNATWGLLHSMGIYYPDKPSPEYQAKAKTFIEALALMYPCVHCADDFQKEIAKSPPRVESRTTFSMWLCEQHNIVNRKIHKPLFECTMEKLEERWRKGKPSCWGED 156          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: CCI44583.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 157.1 bits (396), Expect = 7.000e-35
Identity = 74/177 (41.81%), Postives = 110/177 (62.15%), Query Frame = 0
Query:    8 PSQNLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            PS N  +  +  C   ACK+ +D+ +    + S  KG       E S S S    E+A +KA CPLD   LG +TWG++HS   YYP+NP+ + Q  A   I  +A +YPC+ C +DF+  + + PPRV++R++F++W+CEQHN VN+K+GK +F CN++TL +RWR G+  CW  E
Sbjct:    3 PSINSKSDADPNCVEPACKSKVDLFRHF--IKSDKKG-----IKEESRSASV---ESAQQKAECPLDREELGRSTWGLMHSIGMYYPENPSEEYQRHARSFIEALALMYPCSDCAEDFRKEIIKCPPRVKSRQSFSLWLCEQHNLVNEKIGKPIFQCNMSTLSERWRTGKKECWNIE 169          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: CBN79383.1 (Mitochondrial intermembrane space Erv1 homolog [Ectocarpus siliculosus])

HSP 1 Score: 156.4 bits (394), Expect = 1.200e-34
Identity = 72/186 (38.71%), Postives = 103/186 (55.38%), Query Frame = 0
Query:    8 PSQNLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAW------------RKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCW 182
            PS    +    +CE  AC  M D+L+    + +  K  A   ++    +                      R   CPLD   LG ATWG++H+TAA+YP+ P+ + Q  A  L+ G+AGLYPCT+CRKDF+  V++ PP V +R A ++W C+QHN VN+K+GK  F C L  LD+RW+KG+  CW
Sbjct:    2 PSSRRRSKDPADCEDPACADMADLLRKGRALAAKNKQKAASNTATDGKAAGXXXXXXXXXXXXXXXXXXXSRNDGCPLDKGELGAATWGLIHTTAAHYPEKPSKETQDQARALVTGLAGLYPCTYCRKDFREEVRKLPPDVSSRVALSLWACQQHNLVNEKIGKPTFGCTLPALDERWKKGKPSCW 187          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: XP_002999133.1 (augmenter of liver regeneration [Phytophthora infestans T30-4] >EEY69279.1 augmenter of liver regeneration [Phytophthora infestans T30-4])

HSP 1 Score: 155.2 bits (391), Expect = 2.700e-34
Identity = 74/168 (44.05%), Postives = 99/168 (58.93%), Query Frame = 0
Query:   17 EEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            +  C   AC   +D  KS+ G    TK  AT+           PA +       CPLD   LG+ATWG+LHS   YYPD P+P+ Q+ A   I  +A +YPC HC +DFQ  V  +PPRVE+R  F++W+CEQHN VN K+ K +F C +  L++RWRKG+  CWGE+
Sbjct:    7 DPNCVEPACADKMDFFKSSMG--KKTKKTATQPK---------PATD-------CPLDRQELGNATWGLLHSMGIYYPDKPSPEYQAKAKTFIEALALMYPCVHCAEDFQKEVAISPPRVESRTTFSMWLCEQHNIVNRKIHKPVFECTMEKLEERWRKGKPACWGED 156          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: KUF98447.1 (T-complex protein 1 subunit zeta [Phytophthora nicotianae])

HSP 1 Score: 151.4 bits (381), Expect = 3.900e-33
Identity = 68/168 (40.48%), Postives = 98/168 (58.33%), Query Frame = 0
Query:   17 EEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            +  C   AC   +   KS+ G           K ++ + +   PA +       CPLD   LG +TWG+LHS   YYPD P+P+ Q+ A   +  +A +YPC HC +DFQ  + ++PPRVE+R  F++W+CEQHN VN K+ K +F C L  L++RWRKG+  CWGE+
Sbjct:    7 DPNCVEPACADKMGFFKSSMG-----------KKTKKTAAQPKPATD-------CPLDRQELGKSTWGLLHSMGIYYPDKPSPEYQAKAKTFVEALALMYPCVHCAEDFQKEIAKSPPRVESRTTFSIWLCEQHNIVNRKIHKPVFECTLEKLEERWRKGKPACWGED 156          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: ETI49773.1 (hypothetical protein F443_06548 [Phytophthora parasitica P1569] >ETK89537.1 hypothetical protein L915_06417 [Phytophthora parasitica] >ETL42938.1 hypothetical protein L916_06363 [Phytophthora parasitica] >ETL96114.1 hypothetical protein L917_06231 [Phytophthora parasitica] >ETM49268.1 hypothetical protein L914_06344 [Phytophthora parasitica] >ETO78396.1 hypothetical protein F444_06614 [Phytophthora parasitica P1976] >ETP19410.1 hypothetical protein F441_06553 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 150.6 bits (379), Expect = 6.600e-33
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0
Query:   17 EEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            +  C   AC   +   KS+ G           K ++ + +   PA +       CPLD   LG +TWG+LHS   YYPD P+P+ Q+ A   +  +A +YPC HC +DFQ  + ++PPRVE+R  F++W+CEQHN VN K+ K +F C +  L++RWRKG+  CWGE+
Sbjct:    7 DPNCVEPACADKMGFFKSSMG-----------KKTKKTAAQPKPATD-------CPLDRQELGKSTWGLLHSMGIYYPDKPSPEYQAKAKTFVEALALMYPCVHCAEDFQKEIAKSPPRVESRTTFSIWLCEQHNIVNRKIHKPVFECTMEKLEERWRKGKPACWGED 156          
BLAST of NO12G03900 vs. NCBI_GenBank
Match: XP_008892099.1 (hypothetical protein PPTG_02650 [Phytophthora parasitica INRA-310] >ETN22879.1 hypothetical protein PPTG_02650 [Phytophthora parasitica INRA-310] >ETP47329.1 hypothetical protein F442_06592 [Phytophthora parasitica P10297])

HSP 1 Score: 150.6 bits (379), Expect = 6.600e-33
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 0
Query:   17 EEECEHAACKTMLDVLKSAAGMPSSTKGNATRKSSESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQEQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQHNAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEE 185
            +  C   AC   +   KS+ G           K ++ + +   PA +       CPLD   LG +TWG+LHS   YYPD P+P+ Q+ A   +  +A +YPC HC +DFQ  + ++PPRVE+R  F++W+CEQHN VN K+ K +F C +  L++RWRKG+  CWGE+
Sbjct:    7 DPNCVEPACADKMGFFKSSMG-----------KKTKKTAAQPKPATD-------CPLDRQELGKSTWGLLHSMGIYYPDKPSPEYQAKAKTFVEALALMYPCVHCAEDFQKEIAKSPPRVESRTTFSIWLCEQHNIVNRKIHKPVFECTMEKLEERWRKGKPACWGED 156          
The following BLAST results are available for this feature:
BLAST of NO12G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853403.14.400e-6150.00augmenter of liver regeneration, partial [Nannochl... [more]
EWM25641.11.100e-5949.59augmenter of liver regeneration [Nannochloropsis g... [more]
CCA15302.13.200e-3541.38augmenter of liver regeneration putative [Albugo l... [more]
XP_009519041.17.000e-3542.26hypothetical protein PHYSODRAFT_284799 [Phytophtho... [more]
CCI44583.17.000e-3541.81unnamed protein product [Albugo candida][more]
CBN79383.11.200e-3438.71Mitochondrial intermembrane space Erv1 homolog [Ec... [more]
XP_002999133.12.700e-3444.05augmenter of liver regeneration [Phytophthora infe... [more]
KUF98447.13.900e-3340.48T-complex protein 1 subunit zeta [Phytophthora nic... [more]
ETI49773.16.600e-3339.88hypothetical protein F443_06548 [Phytophthora para... [more]
XP_008892099.16.600e-3339.88hypothetical protein PPTG_02650 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010377NSK010377Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03900.1NO12G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648776gene_5565Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Erv1gene4862Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03900.1NO12G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03900 ID=NO12G03900|Name=NO12G03900|organism=Nannochloropsis oceanica|type=gene|length=765bp
ATGAGCCCTTCCCCTCCACCTCCTTCCCAGAACCTTTTGGCGGCAGTAGA
GGAAGAGTGTGAGCACGCCGCCTGCAAGACTATGCTGGACGTGCTCAAGA
GCGCTGCAGGCATGCCGAGCTCCACCAAAGGTAATGCCACGAGGAAGTCC
TCCGAGTCATCACCCTCTGTGTCCTTCCCTGCAGACGAAGCCGCCTGGCG
CAAGGCTCACTGCCCTCTAGACATAAATGCCTTGGGCGACGCCACGTGGG
GCATGCTCCACTCCACTGCTGCATATTACCCCGACAATCCCACACCTCAA
GAGCAGTCCCTTGCTGCTGGTTTGATCCATGGCATTGCTGGCCTTTACCC
GTGCACGCACTGTCGCAAGGACTTTCAGGCCTGTGTCAAGGAGGCCCCAC
CAAGGGTTGAAAACCGAGAGGCCTTTGCTGTATGGGTGTGCGAGCAGCAT
AATGCGGTGAACGACAAGTTAGGTAAATCATTGTTTCCGTGTAATCTTGC
CACATTGGACAAGAGGTGGAGGAAGGGGGAAGCTCGATGTTGGGGGGAGG
AGGAAGGAGAAGGAGTAGGAGGAAGAGGAGTTGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTAACAAG
GATAAAGACGAAGCAACAATCGCCAGCGTCATTTGTGAGCAGCATTAATA
GTAGCAAGAAAGAAAAAATCTATGTTATCGAGCCCGGGGAAGGGAAGAAA
AAGGCGGCGCCTTGA
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protein sequence of NO12G03900.1

>NO12G03900.1-protein ID=NO12G03900.1-protein|Name=NO12G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSPSPPPPSQNLLAAVEEECEHAACKTMLDVLKSAAGMPSSTKGNATRKS
SESSPSVSFPADEAAWRKAHCPLDINALGDATWGMLHSTAAYYPDNPTPQ
EQSLAAGLIHGIAGLYPCTHCRKDFQACVKEAPPRVENREAFAVWVCEQH
NAVNDKLGKSLFPCNLATLDKRWRKGEARCWGEEEGEGVGGRGVGGGGGG
GGGGRGGGGGGGGGLTRIKTKQQSPASFVSSINSSKKEKIYVIEPGEGKK
KAAP*
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Synonyms
Publications