NO12G03860, NO12G03860 (gene) Nannochloropsis oceanica

Overview
NameNO12G03860
Unique NameNO12G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4239
Alignment locationchr12:1080235..1084473 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1080235..1084473 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010370NSK010370Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03860.1NO12G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592974gene_5562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03860.1NO12G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03860 ID=NO12G03860|Name=NO12G03860|organism=Nannochloropsis oceanica|type=gene|length=4239bp
GCGGGGCGCGGATTGATTCTTTGAGTGACATAGATGAGCTGCTTCTAAAA
AAAGGTCTTCTGGTGAACTAGGCCGGACTTGACGGCGTACTACACCCTGG
GAGGCTTTCAATTATGAGTGCCGAAGCAGACCGACATCGTGCGGTGCAGA
GCATCACATCCCCAAGAGCAGGGCGCTCAGGTCTTGGGTATGCTCTTCTA
TCTCGGAGCTCTACCTCATGTATGCCCGTCCTCTACCTGAAAAATATTAG
CACAAGCTGACTGCCTGTCCATCTTATGTTCCCGCGCGCATTGCTTGTAT
GACCCAACAACTGATCTCTCATCTCTCCCACCGTAGTCGTTGTTTGGCCA
GCCGCAAAAGCCAACTTCAAAATCCTCGACCGACAAGTAACTGGTCCACT
GAAACCATGAGTCTATGTGGCTGGTTTTCCCGCATGGAGACCAATGCCAA
AGCTATCTTTCTTTgtaagtctccctcttcctgaatgtctgctcttggtg
gacgccattgcagcatgctctgtcattatggggcctgacgttcacaatta
ttgggtcctggtcgcatcggcaaatcacttccctctccaatatctacaca
tccacactccacagCCCGGCTATCATGGCTCCTTTCCTTCTCTCTGATCT
GGGTTGGTCTCTTGACCGAAGgtacgtgaatgcatgctcagtgtgtctct
tcgtatgctttagtcctaattcatcctttgacgggtgtccatccctatcg
tccctatcgtagtcctttctctcatgtttgctttgcttccaccatttctc
agcctttcatatccctcttttccccattctcatcacccaatgaacccaac
cctttcacagGCTGGCAACTCGTCAAGCTCCAAGGCTTCGGAATCCAAGA
GACCGTCCAATATGGCCTCTGGCGCATCAGATATACCGGTACCTACACCT
ACACCTCTGACTTCATCGACTGGGAGCCCGAGGTTGCCGAGATTGATGCA
ACAGCTTACCCCCGCGTGCAAGCCACCCGTGCCTGCATCGTCCTGGCCCT
CATGGCCCTAAGCCTCCAATTCCTGGTCGCCCTCCGTGGGTATTGTGCTC
GGTCCTATAAAGTGCAGAGAGTGTGCACTATCTCCTGTGCGGCGTATGCG
TCAGCTGATCTTGCCTTTACACTCTCTGCTATCCTGGTCTGGAAGTCCAT
CTCGGAGGAGGCCTTCCATGTCGTGTGCTCGAGGGAGGGCTGCAGTGTCT
CCCCCCTTGAAGCAGATGCATTTCAAATGACGCCTTACTACGCTTGGGGT
TTTACCATCGTCAAACTAATATTGTCCTTCCCGGGGGTGGTCTCATTGAT
TTACCTTGGTATTGTTTCTTCATCCTCGTCCTCCTCTCAAACAGCAACGG
AGATGCCCGTGGTGACTGCTGTAGGGGGAACTGCTGCTAATGCTGTTGCG
TCGAGGAATGGAGGGAAAAGGGGGGAAAAGTTAGCTGAAATTGAGCAGGT
GGAAGACGATGCAATTATTGGACAGGAGGAGGGGAGTAGAGGGTCACCCA
AGACTGCAGACAGTTTTGGCAGTACAGACAGCAAGAAGATTGGTGGTAAG
AAGGGAAATGGAGACGTGTTCGATAGGAACGCACATGTATCGTACATTTT
GGGGGGGGCAACAGGGGATCCTAATCCGGCATGGCTAAATCCGTAGAGCG
ATGAAGGGAGGAAAGGAGGGGGGAAGGGTAAAGGGTGTTTGCAAGATCAT
AAGGTGAAATGAAAGACCGAAATAGAGATGCTTTTGTAATTATAGGATTG
TATTGCGTGTGAGCGGCAACCTCCCTTCATACGGAAAGATGTATGAAAAA
GAGACGGACAGCATGGCGTAAGATCATAAATGAAAGAGAGATAGACGGTA
TGGAATTTTGGGTTGTAGGGGTGGTAGAGAAGTTGGGAACGAGGAGACGC
GAAGCACAATGGGTGGACTTAAACACGGCAGTCGAAAGGGAGCACCGCTT
GAGTCGATTAGCATATAATAGAGTTTGTGAATAAGCTATACCTTCTCCTG
TCATCCTTCGTCGCATGGTGAGAGAGTAAGATCAAACGCGTCTCAACTAA
GTGTACAAAAGAGATCTGTTTGAGAGGTAGAGTACCCATCACGGAACAAA
ACCTGTCCACAGCCATTATCAGTCGCACCAATTTCAGAAGCATAATGGCA
ATGGTAAACGACGACAAAGGAAGAGGAAGAAAAAGTAATGCAAACAGTGG
GGTCATCTACGTCCACGCTATTCTAATGATCTTCCTGCTCTCGATTCCTG
GTTGTAAAATTCTACTTCCGATTCTCTGTGCCCATTCGTTTATTTACACC
TATACATACACGCCTATTCTTTTTCTATAGTTTCACCCTGCTCTAATCAC
CAACTATTCACCCCCACCTCACCCCCCGCCCGCCCTACAACCCGCGGCGC
ACTCATCAGAACGCTTTACTTTCTCCCTCTCCGCCATCCATGCCTACTTA
CACACTTGCAGATCCCCACCACCCGCTCTCCCTTGCATCAGGCTCTTTCT
CAAGTCACTACCGTCGCTAAGCCCCTTATTCCCTTTTCCCTCACCTACGT
CGTCGCAACCGCTTAAGTCAAGCGTGCCAATGCCCGGGCGAACCTTGCAA
GCCCCTCCTCAATCTTCTCCGGACTCGCCGTCGCAAATGTCGCGCGGAAT
GCAGGCTCTGCATCCTTGCCTGGTGACGGGTCAAACGCGTACCCTGGTAC
CATCAATATGTCCTCCGCCAACAAACCCTCCAACACCGCCTCTGTCTCCG
CCTTTCCCTTCCCCCTCAGCGCTGTCACCTTGAACAGCACAAACATACCT
GCCTTGGGCAAGTCCCAAGTTGCAAGTCCTCGCAAGTGCTTCTCTGCAGC
GTGATGCATCGCGCGTCGTTGCCGCGCGTAGTGCGCTTGTAACTGTTTCA
AATGTGCGTCCAATCCGGCATGGCCCCACTGCTTGAGCATCGAACAAAAC
ACAGATTGCGAGACTGTGCAGGGAAACTGAATAGTTAGCTCGTTCCACTT
CCGATATGCGCCCTCCACGAACGCCTTGGGACCCGTGAGCCACCCGAGGC
GTAAACCAGGACACACCCATTTCGACAAGGATTCCAAGTGAATTACGCGC
CCGTCCACATCCAAGCTGAGCAATGACTTGGGCAGCCCCTCCAAACCCGG
CATGGCGGTTTCCGTCACCTCCTCAGGGTCAGCGGGAAGAAAAAGAAGAC
GGTAGGGATCGTCCTCCACAATCAGCAGGTCGTGTTTTTGCGCCAGCGCG
TACAAAACTTCCTTCCTTTCCGTCGACAAGGACGTACCTGTCGGGTTCTG
TCCGTGCGGGGTCAAGTACAGAAACGCCGCTCGCTCCCCTTCCTCGGCAA
GCTGCAGACACGCTGTGTCCAGCGCGAAAGGCAACATGCCGTCGCTGTCG
AGCTCAAGACCACGCACCTCGTACCCCAGGGGTGCCGCAATGGCCAGAAC
GGCTGCCCACACCAAAGCCTCGGCCAGAATGATGGGTTTCTTCCCCGGTG
GGGGCATGAAAAGCTGGAAGCATTTGGTCAGAGCATCCGTCGAGCCGGTA
GTGGGAATGACAGCCCAATCATCGTACGCCGGTGTGTGGTATCGCCGCAT
GTGAGTGATCAGTTCCTGGCGCAGCTCCGGCATTCCCGTGCCTTGCATGT
AGTTCAGCGGCAAGTCCGCTGCCCCGTCCTCTGTCTCAGTCCCTCCCGTC
AGAGTCCGGTTCTTGAGCGTGATGGTACTCCCATTGGTCATGTCCCAGGT
CACGCCGCGAAACACAAACGTCGACTCGTGCGGGATACCGCCAGCAAGGG
AAATGGAAGCCGAAGTTGCCCGAGCGGCAATCGTCTTGATCAAGGATCCT
TCCAAACGTTGAAATTGTGGGGCCAGGCGCTTACTGGTTTGGTCAAGCGA
CATGGTAACTTGAATAAGTTTCGGGGCTGTGATGTGGTGTATGGTGTACG
ACGTTGGTGTTTGTGGTGAGACATTGTGACGGTGTCAATGTGAAAGAACA
TGACGTGCGAGCTGGACGGTAGTGACATTGGAGCCAAGGCGAGGAAGGAA
GAAGCGGGTATCACAAGAGACACTTATGCAAATTAATGCCTTATTCACGA
TACGAACAAGGGGCATGCCTACATGTTGCTGTGCGCGTGTATGTTGTTTT
TGGATGAGTGTGTCCAAAGTCTCCGCCTCTACGGAAGTC
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protein sequence of NO12G03860.1

>NO12G03860.1-protein ID=NO12G03860.1-protein|Name=NO12G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MTQQLISHLSHRSRCLASRKSQLQNPRPTSNWSTETMSLCGWFSRMETNA
KAIFLSRLSWLLSFSLIWVGLLTEGWQLVKLQGFGIQETVQYGLWRIRYT
GTYTYTSDFIDWEPEVAEIDATAYPRVQATRACIVLALMALSLQFLVALR
GYCARSYKVQRVCTISCAAYASADLAFTLSAILVWKSISEEAFHVVCSRE
GCSVSPLEADAFQMTPYYAWGFTIVKLILSFPGVVSLIYLGIVSSSSSSS
QTATEMPVVTAVGGTAANAVASRNGGKRGEKLAEIEQVEDDAIIGQEEGS
RGSPKTADSFGSTDSKKIGGKKGNGDVFDRNAHVSYILGGATGDPNPAWL
NP*
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Synonyms
Publications