NO12G03830, NO12G03830 (gene) Nannochloropsis oceanica

Overview
NameNO12G03830
Unique NameNO12G03830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length740
Alignment locationchr12:1072329..1073068 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1072329..1073068 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03830 vs. NCBI_GenBank
Match: XP_005852616.1 (hypothetical protein NGA_0412602 [Nannochloropsis gaditana CCMP526] >EKU23215.1 hypothetical protein NGA_0412602 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.0 bits (258), Expect = 2.600e-19
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0 
Query:    1 MKVTTLSAALGAAALALLSFSATTAMLLDTPA--LGQKQHQMFQYLDAARQGEQGQQGVAGNTRACERFVRDKAVETDLLEVISGFYNADVNAMFA 95
            M+ + L  ALGAA L+LLS S + AM L+T A  LG  Q Q++QY D  RQG++GQ G A   RACERFVRDKA++TDL EVISGFYN DV AMFA
Sbjct:    1 MRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 96
[Close]
BLAST of NO12G03830 vs. NCBI_GenBank
Match: EWM25656.1 (hypothetical protein Naga_100500g3 [Nannochloropsis gaditana])

HSP 1 Score: 104.0 bits (258), Expect = 2.600e-19
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 0 
Query:    1 MKVTTLSAALGAAALALLSFSATTAMLLDTPA--LGQKQHQMFQYLDAARQGEQGQQGVAGNTRACERFVRDKAVETDLLEVISGFYNADVNAMFA 95
            M+ + L  ALGAA L+LLS S + AM L+T A  LG  Q Q++QY D  RQG++GQ G A   RACERFVRDKA++TDL EVISGFYN DV AMFA
Sbjct:   29 MRTSLLVGALGAAILSLLSLSLSAAMNLETSAASLGGYQRQIYQYFDNVRQGDRGQYGAANGARACERFVRDKAMQTDLAEVISGFYNNDVAAMFA 124
The following BLAST results are available for this feature:
BLAST of NO12G03830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852616.12.600e-1961.46hypothetical protein NGA_0412602 [Nannochloropsis ... [more]
EWM25656.12.600e-1961.46hypothetical protein Naga_100500g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010367NSK010367Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03830.1NO12G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592959gene_5558Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100500g3gene4858Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03830.1NO12G03830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03830 ID=NO12G03830|Name=NO12G03830|organism=Nannochloropsis oceanica|type=gene|length=740bp
ATGAAAGTCACCACCCTTTCTGCTGCTCTGGGCGCCGCCGCCCTGGCACT
CCTTTCCTTCTCTGCCACTACAGCCATGCTACTGGACACCCCCGCCTTGG
GACAAAAACAACACCAAATGTTTCAGTACCTGGATGCCGCACGACAAGGC
GAGCAAGGACAACAAGgtgagtacgagagatttagaacaaattgagggag
gaaaaacgaaacgggaaaggatagcacaaaaggaaaaaaaagtatatgat
atcacagcacatcgtctctcccgcggccgcggctttgtgtataatcctag
catacacactcaagattactaccctcaatcattttccaatatagGCGTAG
CTGGAAATACAAGGGCATGCGAACGATTCGTGCGTGACAAGGCTGTGGAG
ACGGATTTGCTTGAGgtacgtgacctgtctgtgtgctagtgggtgggtga
taaaaacattatagagggagattcgtgagacgtgacagagacatgtacgt
gtatgcaagtcagtgcgttagagagagcgcgtcgtcctttcctttgtgtg
tccaatctggtcgtgcacgtgcgcatgggtcggagagtgtatggtctgcc
tcacacgaacgcctcctatcccatcgtccgcttactcacctcccttaacc
gctacccacacaccatcactctcactatcatcattacaacagGTCATTTC
TGGCTTTTATAATGCAGATGTCAACGCCATGTTTGCTTGA
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protein sequence of NO12G03830.1

>NO12G03830.1-protein ID=NO12G03830.1-protein|Name=NO12G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MKVTTLSAALGAAALALLSFSATTAMLLDTPALGQKQHQMFQYLDAARQG
EQGQQGVAGNTRACERFVRDKAVETDLLEVISGFYNADVNAMFA*
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Synonyms
Publications