NO12G03800, NO12G03800 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03800 vs. NCBI_GenBank
Match: EWM25660.1 (e3 ubiquitin-protein ligase march6 [Nannochloropsis gaditana]) HSP 1 Score: 228.4 bits (581), Expect = 4.900e-56 Identity = 113/189 (59.79%), Postives = 140/189 (74.07%), Query Frame = 0 Query: 67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGGGEGGWVEGVGILVWQSVGGLALCATIVTLCLMAMTVKD 256 +EE+++CRVCH EAEP EGRPL+HPCLCRGSIKHVHQDCL++WL AS NTA+KCELCG +F F+ +YAPGAPA+L+SWEM+QGL KGAA P L++GG L LLWLGV+PYV+ G FQ +FA SWEE EV+ V VG EGG VE G +W +GG+ALC IV L L A++++D Sbjct: 89 KEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEV-----EEVLDGV-----VGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD 267
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_005853442.1 (E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526] >EKU22918.1 E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 152.9 bits (385), Expect = 2.600e-33 Identity = 63/84 (75.00%), Postives = 77/84 (91.67%), Query Frame = 0 Query: 67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGL 151 +EE+++CRVCH EAEP EGRPL+HPCLCRGSIKHVHQDCL++WL AS NTA+KCELCG +F F+ +YAPGAPA+L+SWEM+QGL Sbjct: 94 KEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGL 177
BLAST of NO12G03800 vs. NCBI_GenBank
Match: GAQ80575.1 (E3 ubiquitin-protein ligase MARCH6 [Klebsormidium nitens]) HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23 Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 0 Query: 67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSW 192 EEEE +CR+C M EPD PL++PC C GSI+ VHQ+CLLQWL S + CE+C F FSP+YAP AP+ L WE+++GL K + R ++ +WL ++PY + L+++ FA +W Sbjct: 11 EEEEDVCRICRMPGEPDS--PLYYPCQCNGSIRWVHQECLLQWLKHSSTVS--CEVCKHPFTFSPVYAPDAPSRLPLWELLKGLISKVTRGSRIVARLNLVLTVWLVIVPYATSWLWRLAFAKTW 131
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KHG12839.1 (E3 ubiquitin-protein ligase MARCH6 [Gossypium arboreum]) HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0 Query: 62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199 +PD EEEEE +CR+C + D PL +PC C GSIK VHQDCLLQWL + + A++CE+C F FSP+YA APA L E + G++ K + LR + +WL ++P+++ ++++ F S+ EA +++ Sbjct: 67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_016675058.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Gossypium hirsutum]) HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0 Query: 62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199 +PD EEEEE +CR+C + D PL +PC C GSIK VHQDCLLQWL + + A++CE+C F FSP+YA APA L E + G++ K + LR + +WL ++P+++ ++++ F S+ EA +++ Sbjct: 67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_016675059.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Gossypium hirsutum]) HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0 Query: 62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199 +PD EEEEE +CR+C + D PL +PC C GSIK VHQDCLLQWL + + A++CE+C F FSP+YA APA L E + G++ K + LR + +WL ++P+++ ++++ F S+ EA +++ Sbjct: 67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_017645343.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Gossypium arboreum]) HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22 Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0 Query: 62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199 +PD EEEEE +CR+C + D PL +PC C GSIK VHQDCLLQWL + + A++CE+C F FSP+YA APA L E + G++ K + LR + +WL ++P+++ ++++ F S+ EA +++ Sbjct: 67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KXN87669.1 (ERAD-associated E3 ubiquitin-protein ligase doa10 [Leucoagaricus sp. SymC.cos]) HSP 1 Score: 113.2 bits (282), Expect = 2.300e-21 Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 0 Query: 65 EEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGG 218 +E EE+ CR+C AEPD+ PLFHPC C G+I+++HQDCL WLA S+ + C++C + F+ +YAP P+ L + +++ LS+ +LRG + ++WL V+P+V++ +++YF+M AW + ++ VG+ GG Sbjct: 2 QEAEEQDTCRICSAPAEPDQ--PLFHPCKCSGTIRYIHQDCLTTWLAHSKK--KTCDVCKHPYSFTKVYAPDMPSRLPTILLIRRLSQHALLAILFVLRGIAVAIIWLTVLPWVTVWTWRMYFSMGESTAWYI--------SSLERPVGNHGG 142
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KZT09822.1 (hypothetical protein LAESUDRAFT_694262 [Laetiporus sulphureus 93-53]) HSP 1 Score: 112.8 bits (281), Expect = 3.000e-21 Identity = 55/151 (36.42%), Postives = 88/151 (58.28%), Query Frame = 0 Query: 67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGG 218 +EE+ CR+C AEPD+ PLFHPC C G+I+++HQDCL WLA S+ + C++C + F+ +YAP P L +++ LS + AA LR ++ +WL V+P ++ +++++FAM AW + R P ++ V S G Sbjct: 2 QEEQVTCRICSAPAEPDQ--PLFHPCRCSGTIRYIHQDCLTTWLAHSKK--KTCDICKHPYAFTKVYAPDMPERLPIVLLLRQLSRQAAAAVLFFLRAMLVGFVWLAVLPLATIWIWRMFFAMGDSAAWWISNRPRPEPGVRNVDVTSTNG 148
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_021879167.1 (hypothetical protein BCR41DRAFT_357650 [Lobosporangium transversale] >ORZ10260.1 hypothetical protein BCR41DRAFT_357650 [Lobosporangium transversale]) HSP 1 Score: 112.8 bits (281), Expect = 3.000e-21 Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0 Query: 67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMM-QGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAW 196 EE+E +CRVC EA P++ PLFHPC C GSI++VHQDCLL+WL S + CELC +F F+PIYAP P + W ++ +G G + +LR ++ +WL ++PY ++ ++++YF W W Sbjct: 2 EEDEEICRVCRSEATPEQ--PLFHPCKCSGSIRYVHQDCLLEWLEHSNK--RYCELCKHSFGFTPIYAPEMPETIPKWILIKKGFDSLGTGV-KLILRAVLVMTIWLVILPYFTIWIWRLYF---WVGDW 123 The following BLAST results are available for this feature:
BLAST of NO12G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03800 ID=NO12G03800|Name=NO12G03800|organism=Nannochloropsis oceanica|type=gene|length=1681bpback to top protein sequence of NO12G03800.1 >NO12G03800.1-protein ID=NO12G03800.1-protein|Name=NO12G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bpback to top Synonyms
Publications
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