NO12G03800, NO12G03800 (gene) Nannochloropsis oceanica

Overview
NameNO12G03800
Unique NameNO12G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1681
Alignment locationchr12:1058693..1060373 -

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Properties
Property NameValue
DescriptionE3 ubiquitin-protein ligase march6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1058693..1060373 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G03800 vs. NCBI_GenBank
Match: EWM25660.1 (e3 ubiquitin-protein ligase march6 [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 4.900e-56
Identity = 113/189 (59.79%), Postives = 140/189 (74.07%), Query Frame = 0
Query:   67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGGGEGGWVEGVGILVWQSVGGLALCATIVTLCLMAMTVKD 256
            +EE+++CRVCH EAEP EGRPL+HPCLCRGSIKHVHQDCL++WL AS NTA+KCELCG +F F+ +YAPGAPA+L+SWEM+QGL  KGAA  P L++GG L LLWLGV+PYV+ G FQ +FA SWEE       EV+  V     VG     EGG VE  G  +W  +GG+ALC  IV L L A++++D
Sbjct:   89 KEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGLMRKGAAFVPRLVKGGALSLLWLGVLPYVTQGAFQFFFATSWEEV-----EEVLDGV-----VGRLMRVEGGAVETGGRFLWTCLGGVALCVGIVLLSLTALSLRD 267          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_005853442.1 (E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526] >EKU22918.1 E3 ubiquitin-protein ligase MARCH6, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.9 bits (385), Expect = 2.600e-33
Identity = 63/84 (75.00%), Postives = 77/84 (91.67%), Query Frame = 0
Query:   67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGL 151
            +EE+++CRVCH EAEP EGRPL+HPCLCRGSIKHVHQDCL++WL AS NTA+KCELCG +F F+ +YAPGAPA+L+SWEM+QGL
Sbjct:   94 KEEDAVCRVCHTEAEPTEGRPLYHPCLCRGSIKHVHQDCLMRWLQASSNTAKKCELCGASFAFTALYAPGAPAQLTSWEMVQGL 177          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: GAQ80575.1 (E3 ubiquitin-protein ligase MARCH6 [Klebsormidium nitens])

HSP 1 Score: 120.9 bits (302), Expect = 1.100e-23
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 0
Query:   67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSW 192
            EEEE +CR+C M  EPD   PL++PC C GSI+ VHQ+CLLQWL  S   +  CE+C   F FSP+YAP AP+ L  WE+++GL  K       + R  ++  +WL ++PY +  L+++ FA +W
Sbjct:   11 EEEEDVCRICRMPGEPDS--PLYYPCQCNGSIRWVHQECLLQWLKHSSTVS--CEVCKHPFTFSPVYAPDAPSRLPLWELLKGLISKVTRGSRIVARLNLVLTVWLVIVPYATSWLWRLAFAKTW 131          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KHG12839.1 (E3 ubiquitin-protein ligase MARCH6 [Gossypium arboreum])

HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199
            +PD EEEEE +CR+C    + D   PL +PC C GSIK VHQDCLLQWL  + + A++CE+C   F FSP+YA  APA L   E + G++ K   +    LR   +  +WL ++P+++  ++++ F  S+ EA +++
Sbjct:   67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_016675058.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Gossypium hirsutum])

HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199
            +PD EEEEE +CR+C    + D   PL +PC C GSIK VHQDCLLQWL  + + A++CE+C   F FSP+YA  APA L   E + G++ K   +    LR   +  +WL ++P+++  ++++ F  S+ EA +++
Sbjct:   67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_016675059.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Gossypium hirsutum])

HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199
            +PD EEEEE +CR+C    + D   PL +PC C GSIK VHQDCLLQWL  + + A++CE+C   F FSP+YA  APA L   E + G++ K   +    LR   +  +WL ++P+++  ++++ F  S+ EA +++
Sbjct:   67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_017645343.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Gossypium arboreum])

HSP 1 Score: 114.8 bits (286), Expect = 7.800e-22
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:   62 NPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVW 199
            +PD EEEEE +CR+C    + D   PL +PC C GSIK VHQDCLLQWL  + + A++CE+C   F FSP+YA  APA L   E + G++ K   +    LR   +  +WL ++P+++  ++++ F  S+ EA +++
Sbjct:   67 DPDMEEEEEDVCRICRNPGDAD--NPLRYPCACSGSIKFVHQDCLLQWL--NHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLF 199          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KXN87669.1 (ERAD-associated E3 ubiquitin-protein ligase doa10 [Leucoagaricus sp. SymC.cos])

HSP 1 Score: 113.2 bits (282), Expect = 2.300e-21
Identity = 55/153 (35.95%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   65 EEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGG 218
            +E EE+  CR+C   AEPD+  PLFHPC C G+I+++HQDCL  WLA S+   + C++C   + F+ +YAP  P+ L +  +++ LS+        +LRG  + ++WL V+P+V++  +++YF+M    AW +         ++   VG+ GG
Sbjct:    2 QEAEEQDTCRICSAPAEPDQ--PLFHPCKCSGTIRYIHQDCLTTWLAHSKK--KTCDVCKHPYSFTKVYAPDMPSRLPTILLIRRLSQHALLAILFVLRGIAVAIIWLTVLPWVTVWTWRMYFSMGESTAWYI--------SSLERPVGNHGG 142          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: KZT09822.1 (hypothetical protein LAESUDRAFT_694262 [Laetiporus sulphureus 93-53])

HSP 1 Score: 112.8 bits (281), Expect = 3.000e-21
Identity = 55/151 (36.42%), Postives = 88/151 (58.28%), Query Frame = 0
Query:   67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKREVVGPVTMSLGVGSEGG 218
            +EE+  CR+C   AEPD+  PLFHPC C G+I+++HQDCL  WLA S+   + C++C   + F+ +YAP  P  L    +++ LS + AA     LR  ++  +WL V+P  ++ +++++FAM    AW +  R    P   ++ V S  G
Sbjct:    2 QEEQVTCRICSAPAEPDQ--PLFHPCRCSGTIRYIHQDCLTTWLAHSKK--KTCDICKHPYAFTKVYAPDMPERLPIVLLLRQLSRQAAAAVLFFLRAMLVGFVWLAVLPLATIWIWRMFFAMGDSAAWWISNRPRPEPGVRNVDVTSTNG 148          
BLAST of NO12G03800 vs. NCBI_GenBank
Match: XP_021879167.1 (hypothetical protein BCR41DRAFT_357650 [Lobosporangium transversale] >ORZ10260.1 hypothetical protein BCR41DRAFT_357650 [Lobosporangium transversale])

HSP 1 Score: 112.8 bits (281), Expect = 3.000e-21
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 0
Query:   67 EEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKHVHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMM-QGLSEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAW 196
            EE+E +CRVC  EA P++  PLFHPC C GSI++VHQDCLL+WL  S    + CELC  +F F+PIYAP  P  +  W ++ +G    G  +   +LR  ++  +WL ++PY ++ ++++YF   W   W
Sbjct:    2 EEDEEICRVCRSEATPEQ--PLFHPCKCSGSIRYVHQDCLLEWLEHSNK--RYCELCKHSFGFTPIYAPEMPETIPKWILIKKGFDSLGTGV-KLILRAVLVMTIWLVILPYFTIWIWRLYF---WVGDW 123          
The following BLAST results are available for this feature:
BLAST of NO12G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25660.14.900e-5659.79e3 ubiquitin-protein ligase march6 [Nannochloropsi... [more]
XP_005853442.12.600e-3375.00E3 ubiquitin-protein ligase MARCH6, partial [Nanno... [more]
GAQ80575.11.100e-2344.80E3 ubiquitin-protein ligase MARCH6 [Klebsormidium ... [more]
KHG12839.17.800e-2240.88E3 ubiquitin-protein ligase MARCH6 [Gossypium arbo... [more]
XP_016675058.17.800e-2240.88PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_016675059.17.800e-2240.88PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_017645343.17.800e-2240.88PREDICTED: probable E3 ubiquitin ligase SUD1 [Goss... [more]
KXN87669.12.300e-2135.95ERAD-associated E3 ubiquitin-protein ligase doa10 ... [more]
KZT09822.13.000e-2136.42hypothetical protein LAESUDRAFT_694262 [Laetiporus... [more]
XP_021879167.13.000e-2142.31hypothetical protein BCR41DRAFT_357650 [Lobosporan... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03800.1NO12G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100546g1gene4851Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03800.1NO12G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03800 ID=NO12G03800|Name=NO12G03800|organism=Nannochloropsis oceanica|type=gene|length=1681bp
CAGGTTCCCAACATATCACAGAGCACAAAAATTTGTACCCGAAACGCTGG
GGGACACGGCCCGCAGACGAGGTGCGGGCGCGGACGCGGACCTTGGCAGC
CTTTAAAAAAGCATCGTCCCCCGGTTATCAAATCCATCACACGATAGCTT
CTTGGCCACAACATCCACGTAGAGCAGCACAAATTCCATGGCAGCAGCAG
GAGGGTCTGACGACATGTTTCCTCCCCAAGACGACGGCACGAGAGCACAA
GGCATTCCCACAGTCCCTGCCCATCTTCCCGAGCCACCTGTCGAGCAAAG
CACCATGACAAACTCCTCCGCGCCCCGAGATCCTCCGAAAGCCAACTCGA
TCATCGGAGCAGTGCCCACCAACCCTGACGAAGAGGAGGAGGAAGAGTCC
CTTTGTCGCGTCTGCCACATGGAAGCCGAGCCCGACGAAGGCCGCCCGCT
CTTCCACCCATGCTTGTGCCGTGGCTCCATCAAGCACGTCCATCAAGACT
GCCTTTTACAATGGCTGGCCGCCTCCAGAAATACGGCGCAAAAGTGTGAA
TTGTGTGGAAAGACGTTTGTTTTTTCCCCCATTTATGCCCCTGGCGCACC
GGCGGAGCTCAGTTCTTGGGAGATGATGCAGGGTTTGTCGGAGAAGGGGG
CCGCGCTTGGACCGCACCTTTTGAGGGGGGGAGTGTTGTGCTTGCTTTGG
TTGGGTGTCATGCCGTATGTGAGCCTGGGCCTGTTTCAGATCTACTTTGC
GATGAGTTGGGAAGAGGCGTGGAAAGTTTGGAAGAGAGAGGTGGTGGGGC
CTGTGACCATGTCCTTGGGAGTAGGATCGGAGGGAGGGGGGGAGGGAGGG
TGGGTGGAGGGAGTAGGGATTTTGGTATGGCAGAGCGTGGGCGGCCTGGC
ATTATGCGCAACGATTGTGACGTTGTGTCTGATGGCCATGACGGTGAAAG
ACATGCTGGCGCAGATGATGAGGGGATGGCGAAGGCGAGGGAGGGCGGAG
GGGAGGGTGAGAAGGGGTCCAGGCGGAGCAAGAAGGCCCGGGGTCCCGCA
CGCACAACAGGAACAGCCACAGCCCCAGCAACCACCGCCGGCACCGCAGC
AGCAGCAGGAGATTCCATTAGATGAGTATCAGCATGGACCCGCGGCGTGG
GAAGGGGCAGGAGCAGGAGCGGCTCCAGCAGTCGGAGCGGCAGCAAATGC
AGTAGTGCCCGTTTTACCAGCAGCACCAGCAGCAGCACCAGCAGCACCAG
CAGCACCAGCAGCACCAGCAGCACAAGTAGCACCGGTAGTAGGACCAGCA
GCACCAGCAGCACCACGTGTCGTCTTCGCTGACCCTAACCACCAAGGCCT
GCAAGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAAGTTCCGC
TGAGAGACATGCTTGAGGCGGACATTGACGAAGTGGACTTGTGGGAGTTG
CTCGGCTTCAACAGCCCCTGGTCGTTATCCCTGAGACGGTGGGGCTCAGT
ATTATTGTTCAATTCGGTGTTTTTGACCGTCTTCCAGTTCGGGCCTTTCC
GATTGGGCTGCGCGGTGTGGGGGTGGGTATTAAGGGTGGAGGCGCTGTAT
GTGCGGCGGATGCAGCAGGGAGGAGGAGGAGGAGGAGGGGGGGGGGGGAT
GTACTGTCATCGTGGGTGGTCTCCAAGATGA
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protein sequence of NO12G03800.1

>NO12G03800.1-protein ID=NO12G03800.1-protein|Name=NO12G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MAAAGGSDDMFPPQDDGTRAQGIPTVPAHLPEPPVEQSTMTNSSAPRDPP
KANSIIGAVPTNPDEEEEEESLCRVCHMEAEPDEGRPLFHPCLCRGSIKH
VHQDCLLQWLAASRNTAQKCELCGKTFVFSPIYAPGAPAELSSWEMMQGL
SEKGAALGPHLLRGGVLCLLWLGVMPYVSLGLFQIYFAMSWEEAWKVWKR
EVVGPVTMSLGVGSEGGGEGGWVEGVGILVWQSVGGLALCATIVTLCLMA
MTVKDMLAQMMRGWRRRGRAEGRVRRGPGGARRPGVPHAQQEQPQPQQPP
PAPQQQQEIPLDEYQHGPAAWEGAGAGAAPAVGAAANAVVPVLPAAPAAA
PAAPAAPAAPAAQVAPVVGPAAPAAPRVVFADPNHQGLQGQQQQQQQQQQ
EEVPLRDMLEADIDEVDLWELLGFNSPWSLSLRRWGSVLLFNSVFLTVFQ
FGPFRLGCAVWGWVLRVEALYVRRMQQGGGGGGGGGGMYCHRGWSPR*
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Synonyms
Publications