NO12G03780, NO12G03780 (gene) Nannochloropsis oceanica

Overview
NameNO12G03780
Unique NameNO12G03780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr12:1055932..1056924 -

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Properties
Property NameValue
DescriptionRing u-box domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1055932..1056924 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G03780 vs. NCBI_GenBank
Match: EWM25664.1 (ring u-box domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 190.3 bits (482), Expect = 9.700e-45
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0
Query:   89 HLQRVLPSLGHSFLLLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLGLYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRH 232
            HL  +L       L   Q+ LLL+LWLL+LPLLVGLLFEL +++PARVP+DETPLIP YEAW LGLVFLKI  RCLLLGL GNDHPWKRKFERV ANGF  L+F WTL  VVLP+L LFLSLLL PYF SK+VE+L +LYLRH
Sbjct:    9 HLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRH 151          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: PNT57505.1 (hypothetical protein POPTR_001G304100v3 [Populus trichocarpa])

HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24
Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY L++ V  +        LG PM   A+   + RF    W                   G   ++ L +   R    VW      +  LH+ +RDD YL+G +L NY ++ G E+
Sbjct:  863 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1051          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_024465985.1 (probable E3 ubiquitin ligase SUD1 isoform X2 [Populus trichocarpa] >PNT57503.1 hypothetical protein POPTR_001G304100v3 [Populus trichocarpa])

HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24
Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY L++ V  +        LG PM   A+   + RF    W                   G   ++ L +   R    VW      +  LH+ +RDD YL+G +L NY ++ G E+
Sbjct:  877 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1065          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_024465981.1 (probable E3 ubiquitin ligase SUD1 isoform X1 [Populus trichocarpa] >PNT57506.1 hypothetical protein POPTR_001G304100v3 [Populus trichocarpa])

HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24
Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY L++ V  +        LG PM   A+   + RF    W                   G   ++ L +   R    VW      +  LH+ +RDD YL+G +L NY ++ G E+
Sbjct:  878 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1066          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_011000128.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Populus euphratica])

HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGRE 329
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY L++ V  +        LG PM   A+   + RF    W                   G   ++ L +   R    VW      +  LH+ +RDD YL+G +L NY ++ G +
Sbjct:  878 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEQ 1065          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_011000129.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Populus euphratica])

HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGRE 329
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY L++ V  +        LG PM   A+   + RF    W                   G   ++ L +   R    VW      +  LH+ +RDD YL+G +L NY ++ G +
Sbjct:  877 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEQ 1064          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019165417.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Ipomoea nil])

HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23
Identity = 84/234 (35.90%), Postives = 129/234 (55.13%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQ---EEGREEG 331
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVPIDE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V+P+++  L+ L  PY L++ V  +        LG P+  + A+ RF        W                   G   ++ L++   R    VW      +  LH+ +RDD YL+G  L NY +   E+  EEG
Sbjct:  898 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWALGLIFLKIWTRLVMLDQMMPLVDDSWRTKFERVRQDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPI--------LGYPLVVNSAVYRF-------AW------------------LGCLGFSLLWFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNYGEDVVEKQNEEG 1090          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019165418.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Ipomoea nil])

HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23
Identity = 84/234 (35.90%), Postives = 129/234 (55.13%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQ---EEGREEG 331
            ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVPIDE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V+P+++  L+ L  PY L++ V  +        LG P+  + A+ RF        W                   G   ++ L++   R    VW      +  LH+ +RDD YL+G  L NY +   E+  EEG
Sbjct:  897 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWALGLIFLKIWTRLVMLDQMMPLVDDSWRTKFERVRQDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPI--------LGYPLVVNSAVYRF-------AW------------------LGCLGFSLLWFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNYGEDVVEKQNEEG 1089          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019423520.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Lupinus angustifolius])

HSP 1 Score: 119.0 bits (297), Expect = 2.800e-23
Identity = 81/228 (35.53%), Postives = 123/228 (53.95%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGR 328
            ++ +S  LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR NGF RL+  W L ++VLP+++  L+ L  PY L++ V           LG P+  + A+ RF        W                   G   ++FL +   R    VW      +  LH+ +RDD YL+G  L N+ +   R
Sbjct:  896 IVMKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHLMPLMDESWRAKFERVRENGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFP--------ALGYPLVVNSAVYRF-------AW------------------LGCLSFSFLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNFGEHVQR 1082          
BLAST of NO12G03780 vs. NCBI_GenBank
Match: EPS69519.1 (hypothetical protein M569_05245, partial [Genlisea aurea])

HSP 1 Score: 118.6 bits (296), Expect = 3.600e-23
Identity = 76/228 (33.33%), Postives = 124/228 (54.39%), Query Frame = 0
Query:  103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAF----LYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQE 325
            ++ +S  LLS+W+ ++P+L+GLLFEL++++P RVP+DE+P+   Y+ WALGL+FLKI  R ++L   +   D  W+ KFERVR +GF RL+  W L ++V P+++  L+ L  PY +S+ +  +        LG P                                LL+ + + R+A+    L+  LY    R  +W    ++ LH+ +RDD YL+G  L NY ++
Sbjct:  100 IIVKSCALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMIPLVDESWRVKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVVSRGIFPI--------LGYP--------------------------------LLVNSAVYRFAWLGCLLFSLLYLCGQRFHIW----FRNLHNSIRDDRYLIGRRLHNYGEK 283          
The following BLAST results are available for this feature:
BLAST of NO12G03780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25664.19.700e-4570.63ring u-box domain-containing protein, partial [Nan... [more]
PNT57505.14.300e-2435.81hypothetical protein POPTR_001G304100v3 [Populus t... [more]
XP_024465985.14.300e-2435.81probable E3 ubiquitin ligase SUD1 isoform X2 [Popu... [more]
XP_024465981.14.300e-2435.81probable E3 ubiquitin ligase SUD1 isoform X1 [Popu... [more]
XP_011000128.11.200e-2335.53PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_011000129.11.200e-2335.53PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_019165417.12.100e-2335.90PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_019165418.12.100e-2335.90PREDICTED: probable E3 ubiquitin ligase SUD1 isofo... [more]
XP_019423520.12.800e-2335.53PREDICTED: probable E3 ubiquitin ligase SUD1 [Lupi... [more]
EPS69519.13.600e-2333.33hypothetical protein M569_05245, partial [Genlisea... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010361NSK010361Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03780.1NO12G03780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592945gene_5556Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101014g1gene4850Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03780.1NO12G03780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03780 ID=NO12G03780|Name=NO12G03780|organism=Nannochloropsis oceanica|type=gene|length=993bp
ATGGTGGTGGCTGAGGGAGAAGAGCGAGCAGGAGGAGGTCGACCGCAATT
ACAACAGCAGCGGCAGGAAGAGGGGCAGGAGCAGGAAGACCGCCGAGATC
AGGAGGAGAAAGAGCAGGAGGATGGAGGGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACGGCAAACACA
AAAAGCAAATCCCCTCGCGTTCCTTGTCGCCCGTATCCGCACCCACGCTC
ACGACCGTCTCATCCACCTCCAACGTGTCCTCCCCTCCCTCGGGCACTCC
TTTCTCCTCCTCTTTCAATCCCTCCTCCTGCTCTCCCTCTGGCTTCTTGT
CCTCCCCCTCCTCGTCGGCCTTCTCTTTGAACTGGTCTTAGTCATTCCTG
CTCGTGTCCCCATCGACGAGACGCCTCTCATCCCTTTCTACGAGGCCTGG
GCTCTCGGCCTCGTCTTCCTCAAAATCCAAGCCCGCTGCCTCCTTCTAGG
TCTCTACGGTAACGACCACCCTTGGAAACGAAAATTTGAACGTGTCCGTG
CCAACGGCTTTCGGCGCCTAGAGTTTCGGTGGACCTTGACTCAGGTCGTC
CTTCCTCTCCTCCTCCTCTTCCTCTCCCTCCTTCTCACCCCCTACTTTCT
CAGCAAAACCGTCGAGAAACTCGCACATCTCTACCTCCGACACGGCCTCG
GCGGGCCCATGCCGCACCCTGCCCTCCCTCGCTTCCTCGCTCGCTTTCTC
GCCCCTGTCTGGTACCGGCAACAGCAGCAGCGGGACATACACGAGGCTTC
GATCCTACTTTTGGTGGCGGGAATAAAGAGATACGCGTTTTTATACTACG
CCTTGTATCGTGGTAGTGTGAGGGTTTGGCTGTGGGTAGAGAAGGGCTGG
AAGCAGCTGCATGACAGGTTGAGAGATGACGCTTATTTGGTGGGGATGGA
GTTGAAGAATTACTCGCAGGAAGAAGGGAGGGAGGAGGGGTAG
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protein sequence of NO12G03780.1

>NO12G03780.1-protein ID=NO12G03780.1-protein|Name=NO12G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MVVAEGEERAGGGRPQLQQQRQEEGQEQEDRRDQEEKEQEDGGQQQQQQQ
QQQQQQQQQQQRQRQTQKANPLAFLVARIRTHAHDRLIHLQRVLPSLGHS
FLLLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAW
ALGLVFLKIQARCLLLGLYGNDHPWKRKFERVRANGFRRLEFRWTLTQVV
LPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFL
APVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGW
KQLHDRLRDDAYLVGMELKNYSQEEGREEG*
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Synonyms
Publications