NO12G03780, NO12G03780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03780 vs. NCBI_GenBank
Match: EWM25664.1 (ring u-box domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 190.3 bits (482), Expect = 9.700e-45 Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 0 Query: 89 HLQRVLPSLGHSFLLLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLGLYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRH 232 HL +L L Q+ LLL+LWLL+LPLLVGLLFEL +++PARVP+DETPLIP YEAW LGLVFLKI RCLLLGL GNDHPWKRKFERV ANGF L+F WTL VVLP+L LFLSLLL PYF SK+VE+L +LYLRH Sbjct: 9 HLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRH 151
BLAST of NO12G03780 vs. NCBI_GenBank
Match: PNT57505.1 (hypothetical protein POPTR_001G304100v3 [Populus trichocarpa]) HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24 Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY L++ V + LG PM A+ + RF W G ++ L + R VW + LH+ +RDD YL+G +L NY ++ G E+ Sbjct: 863 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1051
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_024465985.1 (probable E3 ubiquitin ligase SUD1 isoform X2 [Populus trichocarpa] >PNT57503.1 hypothetical protein POPTR_001G304100v3 [Populus trichocarpa]) HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24 Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY L++ V + LG PM A+ + RF W G ++ L + R VW + LH+ +RDD YL+G +L NY ++ G E+ Sbjct: 877 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1065
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_024465981.1 (probable E3 ubiquitin ligase SUD1 isoform X1 [Populus trichocarpa] >PNT57506.1 hypothetical protein POPTR_001G304100v3 [Populus trichocarpa]) HSP 1 Score: 121.7 bits (304), Expect = 4.300e-24 Identity = 82/229 (35.81%), Postives = 127/229 (55.46%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGREE 330 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY L++ V + LG PM A+ + RF W G ++ L + R VW + LH+ +RDD YL+G +L NY ++ G E+ Sbjct: 878 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEEQ 1066
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_011000128.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Populus euphratica]) HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23 Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGRE 329 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY L++ V + LG PM A+ + RF W G ++ L + R VW + LH+ +RDD YL+G +L NY ++ G + Sbjct: 878 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEQ 1065
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_011000129.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Populus euphratica]) HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23 Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGRE 329 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY L++ V + LG PM A+ + RF W G ++ L + R VW + LH+ +RDD YL+G +L NY ++ G + Sbjct: 877 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFPV--------LGYPM---AVNSAVYRF---AW------------------LGCLCFSLLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRKLHNYGEDLGEQ 1064
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019165417.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X1 [Ipomoea nil]) HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23 Identity = 84/234 (35.90%), Postives = 129/234 (55.13%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQ---EEGREEG 331 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVPIDE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V+P+++ L+ L PY L++ V + LG P+ + A+ RF W G ++ L++ R VW + LH+ +RDD YL+G L NY + E+ EEG Sbjct: 898 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWALGLIFLKIWTRLVMLDQMMPLVDDSWRTKFERVRQDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPI--------LGYPLVVNSAVYRF-------AW------------------LGCLGFSLLWFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNYGEDVVEKQNEEG 1090
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019165418.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Ipomoea nil]) HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23 Identity = 84/234 (35.90%), Postives = 129/234 (55.13%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQ---EEGREEG 331 ++ +SL LLS+W+ V+P+L+GLLFEL++++P RVPIDE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V+P+++ L+ L PY L++ V + LG P+ + A+ RF W G ++ L++ R VW + LH+ +RDD YL+G L NY + E+ EEG Sbjct: 897 IVLKSLALLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQDWALGLIFLKIWTRLVMLDQMMPLVDDSWRTKFERVRQDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPI--------LGYPLVVNSAVYRF-------AW------------------LGCLGFSLLWFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNYGEDVVEKQNEEG 1089
BLAST of NO12G03780 vs. NCBI_GenBank
Match: XP_019423520.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Lupinus angustifolius]) HSP 1 Score: 119.0 bits (297), Expect = 2.800e-23 Identity = 81/228 (35.53%), Postives = 123/228 (53.95%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPM-PHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAFLYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQEEGR 328 ++ +S LLS+W+ V+P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR NGF RL+ W L ++VLP+++ L+ L PY L++ V LG P+ + A+ RF W G ++FL + R VW + LH+ +RDD YL+G L N+ + R Sbjct: 896 IVMKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHLMPLMDESWRAKFERVRENGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFP--------ALGYPLVVNSAVYRF-------AW------------------LGCLSFSFLCFCAKR--FHVW------FTNLHNSIRDDRYLIGRRLHNFGEHVQR 1082
BLAST of NO12G03780 vs. NCBI_GenBank
Match: EPS69519.1 (hypothetical protein M569_05245, partial [Genlisea aurea]) HSP 1 Score: 118.6 bits (296), Expect = 3.600e-23 Identity = 76/228 (33.33%), Postives = 124/228 (54.39%), Query Frame = 0 Query: 103 LLFQSLLLLSLWLLVLPLLVGLLFELVLVIPARVPIDETPLIPFYEAWALGLVFLKIQARCLLLG--LYGNDHPWKRKFERVRANGFRRLEFRWTLTQVVLPLLLLFLSLLLTPYFLSKTVEKLAHLYLRHGLGGPMPHPALPRFLARFLAPVWYRQQQQRDIHEASILLLVAGIKRYAF----LYYALYRGSVRVWLWVEKGWKQLHDRLRDDAYLVGMELKNYSQE 325 ++ +S LLS+W+ ++P+L+GLLFEL++++P RVP+DE+P+ Y+ WALGL+FLKI R ++L + D W+ KFERVR +GF RL+ W L ++V P+++ L+ L PY +S+ + + LG P LL+ + + R+A+ L+ LY R +W ++ LH+ +RDD YL+G L NY ++ Sbjct: 100 IIVKSCALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMIPLVDESWRVKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVVSRGIFPI--------LGYP--------------------------------LLVNSAVYRFAWLGCLLFSLLYLCGQRFHIW----FRNLHNSIRDDRYLIGRRLHNYGEK 283 The following BLAST results are available for this feature:
BLAST of NO12G03780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03780 ID=NO12G03780|Name=NO12G03780|organism=Nannochloropsis oceanica|type=gene|length=993bpback to top protein sequence of NO12G03780.1 >NO12G03780.1-protein ID=NO12G03780.1-protein|Name=NO12G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bpback to top Synonyms
Publications
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