NO12G03740, NO12G03740 (gene) Nannochloropsis oceanica

Overview
NameNO12G03740
Unique NameNO12G03740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2304
Alignment locationchr12:1036639..1038942 -

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Properties
Property NameValue
DescriptionEr lumen protein retaining receptor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1036639..1038942 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046923ER retention sequence binding
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0006621protein retention in ER lumen
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR000133ER_ret_rcpt
Homology
BLAST of NO12G03740 vs. NCBI_GenBank
Match: EWM25670.1 (er lumen protein retaining receptor [Nannochloropsis gaditana])

HSP 1 Score: 558.9 bits (1439), Expect = 9.300e-156
Identity = 273/295 (92.54%), Postives = 284/295 (96.27%), Query Frame = 0
Query:    1 MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV 296
            MG+SKGGNVNMQLDRYLR + KHR SPA AWVGFLLLSLVVWKLVSDGDFSFIMTYGAFAR+FGFGLLAVK+WTARSATGVS KTLQLY LVFFFRLTSIIPFSGYLPYDKSGDWFYHFVES+SLFLVLV++YLVK+RFPHSYDERTDSFGN+HVP   GALVYLA+PC  LAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYL+SVRSGLPLQLPRAGGLV
Sbjct:   54 MGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_005854326.1 (er lumen protein retaining receptor, partial [Nannochloropsis gaditana CCMP526] >EKU22033.1 er lumen protein retaining receptor, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 425.2 bits (1092), Expect = 1.600e-115
Identity = 218/295 (73.90%), Postives = 230/295 (77.97%), Query Frame = 0
Query:    1 MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV 296
            MG+SKGGNVNMQLDRYLR + KHR SPA AWVGFLLLSLVVWKLVSDGDFSFIMTYGAFAR+FGFGLLAVK+WTARSATGVS KTLQLY LVFFFRLTSIIPFSGYLPYDKSGDWFYHFVES+SLFLVLV++YLVK+RFPHSYDERTDSFGN+HVP   GALVYLA+PCF LAVLFHPGLNSHFLADTTWAFS+                                                       GSKMVGVFVLLTQFIHIILMVDFFYYYL+SVRSGLPLQLPRAGGLV
Sbjct:   43 MGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCFALAVLFHPGLNSHFLADTTWAFSI-------------------------------------------------------GSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 282          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: GAX19902.1 (hypothetical protein FisN_1Lh630 [Fistulifera solaris])

HSP 1 Score: 300.4 bits (768), Expect = 6.000e-78
Identity = 143/270 (52.96%), Postives = 192/270 (71.11%), Query Frame = 0
Query:   25 NSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGL 295
            N     W GF   SL V+ L+S GDFSF+MTYGA AR FGFG+L VK + ++ ATGVS+K+LQLY LVFFFRLTSII   GYLPYDKSGDW YH +E +SL     ALY   + F  +Y    D FG  +VP   GA VY+A+P  ++++  HP LN+ FL+DT W ++MYLES+A++PQLYMFQKQ+S VVE+L  H+V A GF R+++ +FW+ SYHEL   SGS++ G   L +QF+ ++LM+DFF+YY ++V++  PL LP+  G+
Sbjct:   90 NKNVYMWAGFFTASLFVYFLLSGGDFSFLMTYGAMARMFGFGILIVKTYKSQRATGVSVKSLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHLIEIMSLIFTSAALYGCMVPFKGTYQADMDRFGEFNVPPGAGA-VYIAVPVLIISIFIHPNLNADFLSDTAWTYAMYLESMALIPQLYMFQKQTSGVVELLTAHFVAALGFGRLMEFLFWIYSYHELASSSGSRLPGYLALFSQFVQLVLMIDFFWYYYMAVKNATPLVLPQHSGM 358          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: GAX28580.1 (hypothetical protein FisN_1Hh630 [Fistulifera solaris])

HSP 1 Score: 300.1 bits (767), Expect = 7.800e-78
Identity = 143/270 (52.96%), Postives = 192/270 (71.11%), Query Frame = 0
Query:   25 NSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGL 295
            N     W GF   SL V+ L+S GDFSF+MTYGA AR FGFG+L VK + ++ ATGVS+K+LQLY LVFFFRLTSII   GYLPYDKSGDW YH +E +SL     ALY   + F  +Y    D FG  +VP   GA VY+A+P  ++++  HP LN+ FL+DT W ++MYLES+A++PQLYMFQKQ+S VVE+L  H+V A GF R+++ +FW+ SYHEL   SGS++ G   L +QF+ ++LM+DFF+YY ++V++  PL LP+  G+
Sbjct:   90 NKNVYMWAGFFTASLFVYFLLSGGDFSFLMTYGAMARMFGFGILIVKTYKSQRATGVSVKSLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHLIEIMSLIFTSAALYGCMVPFKGTYQADMDRFGEFNVPPGAGA-VYIALPVLIISIFIHPNLNADFLSDTAWTYAMYLESMALIPQLYMFQKQTSGVVELLTAHFVAALGFGRLMEFLFWIYSYHELASSSGSRLPGYLALFSQFVQLVLMIDFFWYYYMAVKNATPLVLPQHSGM 358          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: OEU15622.1 (hypothetical protein FRACYDRAFT_170314, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 298.9 bits (764), Expect = 1.700e-77
Identity = 146/252 (57.94%), Postives = 184/252 (73.02%), Query Frame = 0
Query:   25 NSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYY 277
            N+    W GF   SL V+ ++S GDFSF+MTYG  AR+FGFG+L +K + ++ ATGVS+KTLQLY +VFFFRLTSII   GYLPYDKSGDW YHFVE +SL L  +ALY   + F H+Y    D FG + VP   GA VYLA P  LLA++ HP LN+ F++DT W ++MYLES A+LPQLYMFQKQSS VVE+L  H+VFA GF RV++ +FW+ SYHEL D SGSK+ G   L +  + II+M+DFF+YY
Sbjct:  109 NANVLMWAGFFSASLFVYFMMSGGDFSFLMTYGGMARTFGFGILNLKTFKSQRATGVSIKTLQLYVIVFFFRLTSIIRHEGYLPYDKSGDWLYHFVEGMSLVLASLALYACMVPFKHTYQAELDKFGELLVPPGTGA-VYLAAPILLLAIIVHPNLNADFISDTAWTYAMYLESAALLPQLYMFQKQSSGVVELLTAHFVFALGFGRVMEFLFWIYSYHELADASGSKLPGYLALFSLAVQIIMMLDFFWYY 359          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_002290839.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92591.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 296.6 bits (758), Expect = 8.600e-77
Identity = 146/268 (54.48%), Postives = 189/268 (70.52%), Query Frame = 0
Query:   25 NSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAG 293
            N     W GF   SL V+ ++S GDFSF+MTYGA +R FGFG+L VK + ++ ATGVS+KTLQLY LVFFFRLTSII   GYLPYDKSGDW YH +E ++L     AL+   + F  +Y    D FG M+VP   GA VYLA+P  LLAV  HP LNS F++D  W ++MYLESVA++PQL+MFQKQ S VVE+L  H+V A GF RV++ +FW+ SYHEL   +GSK+ G   L +QF+ ++LM+DFF+YY ++V++  PL LP  G
Sbjct:    7 NKNVIMWAGFFTASLFVYFMMSGGDFSFLMTYGAMSRMFGFGILNVKTFMSKRATGVSVKTLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHVIEILALVFTASALWGCMVPFKQTYQADQDKFGEMNVPPGAGA-VYLAVPVMLLAVFVHPNLNSDFVSDVAWTYAMYLESVALVPQLFMFQKQQSGVVELLTAHFVAALGFGRVMEFMFWVYSYHELATSAGSKLPGYLALFSQFMQLVLMLDFFWYYYLAVKNATPLVLPSHG 273          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: CBJ26352.1 (er lumen protein retaining receptor 1 [Ectocarpus siliculosus])

HSP 1 Score: 290.8 bits (743), Expect = 4.700e-75
Identity = 146/285 (51.23%), Postives = 198/285 (69.47%), Query Frame = 0
Query:    5 KGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLP 290
            +GG+ NM +    +   +H N   A W GF   S VV+ L SDGDFSF+MT+ +F R FGF +L   +   + A GVS+K+LQLY +VF  RL S++   GYLPYD+SGD+ YH  E  SL L +  + L+  +F  +Y +  DSFG +HVP + G L Y+ +PC LLA++ HP LN +FL+DT W FSMYLES+A++PQL+MFQKQ+  +VEVL+ H  FA G ARVLDM+FWM SY EL  H+GS  VG+FVL +QF+H+++M DFFYYY +SV++G  +QLP
Sbjct:    8 RGGSSNMVMGTVRK---QHMN--IALWFGFFTASFVVFYLFSDGDFSFLMTFASFTRGFGFAVLLGLMLAKKHARGVSMKSLQLYAVVFASRLVSVLQHEGYLPYDRSGDFVYHGAEIASLALAVGCVVLISTKFKSTYQQDVDSFGALHVPTEWGTL-YIFVPCLLLAIVMHPNLNKNFLSDTAWTFSMYLESMAIVPQLFMFQKQAKGIVEVLVTHSTFALGLARVLDMVFWMFSYKELT-HAGSNSVGMFVLFSQFVHVVIMGDFFYYYAISVKTGNMMQLP 285          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_002178083.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC50897.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 290.8 bits (743), Expect = 4.700e-75
Identity = 138/252 (54.76%), Postives = 183/252 (72.62%), Query Frame = 0
Query:   25 NSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYY 277
            N     W GF  +SLVV+ ++S GDFSF+MTYGA +R FGFG+L VK + +  A+GVS+KTLQLY LVFFFRLTSII   GYLPYDKSGDW YHF+E  +L     ALY   + F  +Y +  D FG  +VP+ +GA +YLA P  ++A+L HP LN+ F++DT W ++MYLES A++PQLYMFQKQ+S VVE+L  H+V A GF R+++  FW+ SYHEL + SGSK+ G   L +QF+ ++LM+DFF+YY
Sbjct:    1 NKNVYIWAGFFTISLVVYSMLSGGDFSFLMTYGAMSRMFGFGILNVKTFKSERASGVSVKTLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHFIEIAALLFTASALYGCMVPFKGTYQKELDRFGEFNVPEGLGA-IYLAGPILIIAILIHPNLNADFISDTAWTYAMYLESTALMPQLYMFQKQASGVVELLTAHFVAALGFGRLMEFFFWIYSYHELANSSGSKLPGYLALFSQFVQLVLMIDFFWYY 251          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: XP_009041692.1 (hypothetical protein AURANDRAFT_59616 [Aureococcus anophagefferens] >EGB03617.1 hypothetical protein AURANDRAFT_59616 [Aureococcus anophagefferens])

HSP 1 Score: 290.4 bits (742), Expect = 6.200e-75
Identity = 146/280 (52.14%), Postives = 198/280 (70.71%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNM-HVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQS--SQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV 296
            F G  ++S  A W+GFL+LS +V+ + SDGDFSF++TY +  R FG  LL  K+ T++SA G+S KTL  Y +VF  RL SI+   GYLPYD+SGDW YH VE  S    L AL LV +    SY+E  DSFG +  +P  +GALV + +P  L A  FHPGLN  F++DT+W ++MYLES A+LPQL++FQKQS  +  V+ LIGH+V A GF+R+++M FWM+S+HEL D +G++ VGV VL TQ +H+++M DFFY+YL SV  G+P+QLP A G+V
Sbjct:   14 FEGTRKSSMLAPWLGFLMLSTLVYLVFSDGDFSFLLTYASLTRCFGITLLVAKMQTSQSAAGLSAKTLHCYAVVFASRLVSIMRHEGYLPYDRSGDWIYHCVEFASFGATLAALGLVHVVHGRSYEENNDSFGALPPLPGSLGALVVI-LPTLLFAACFHPGLNKDFISDTSWTYAMYLESFAILPQLFLFQKQSKANATVDYLIGHFVAALGFSRLVEMGFWMNSFHELADRNGNRYVGVLVLATQMVHLVIMGDFFYFYLRSVGRGMPIQLPTAAGMV 292          
BLAST of NO12G03740 vs. NCBI_GenBank
Match: OQS05607.1 (hypothetical protein THRCLA_02290 [Thraustotheca clavata])

HSP 1 Score: 286.6 bits (732), Expect = 8.900e-74
Identity = 138/275 (50.18%), Postives = 185/275 (67.27%), Query Frame = 0
Query:   19 FMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSFGNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGG 294
            F+ KH+ +  A W GF ++ L  + L SDGDFSF+MT+GAF R+FGFG+L  K  T RS +G+SLKTLQLY  VFFFRL SI+ + GYLPYD+SGDW Y F+E V L L +  ++LV ++F  SY+ R D+FG +HVP + G +VY+ +PC  L +L HP LN ++ AD  W  ++Y+E+VA+LPQL+MFQK+    VE  I HWV+A  F   L + FWM SYHEL +      VG  V+  Q  H+I+M DF YYY  S++ G P+ LP  GG
Sbjct:   11 FVTKHKGN-IALWTGFFVIVLFAYHLFSDGDFSFLMTFGAFVRAFGFGILIFKSLTQRSVSGLSLKTLQLYAFVFFFRLCSILRYQGYLPYDRSGDWLYTFIEFVGLALTIGVIFLVTVQFRGSYEFRYDTFGFLHVPSEYG-IVYILVPCIFLGMLIHPNLNMNWFADVAWTIALYIEAVAILPQLFMFQKRGGGTVESCISHWVYALAFGSFLHLWFWMFSYHELGEKDAGHHVGYTVIFVQIGHMIMMGDFLYYYFKSLKDGGPMMLPTHGG 283          
The following BLAST results are available for this feature:
BLAST of NO12G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25670.19.300e-15692.54er lumen protein retaining receptor [Nannochlorops... [more]
XP_005854326.11.600e-11573.90er lumen protein retaining receptor, partial [Nann... [more]
GAX19902.16.000e-7852.96hypothetical protein FisN_1Lh630 [Fistulifera sola... [more]
GAX28580.17.800e-7852.96hypothetical protein FisN_1Hh630 [Fistulifera sola... [more]
OEU15622.11.700e-7757.94hypothetical protein FRACYDRAFT_170314, partial [F... [more]
XP_002290839.18.600e-7754.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBJ26352.14.700e-7551.23er lumen protein retaining receptor 1 [Ectocarpus ... [more]
XP_002178083.14.700e-7554.76predicted protein, partial [Phaeodactylum tricornu... [more]
XP_009041692.16.200e-7552.14hypothetical protein AURANDRAFT_59616 [Aureococcus... [more]
OQS05607.18.900e-7450.18hypothetical protein THRCLA_02290 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010353NSK010353Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03740.1NO12G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592919gene_5552Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100355g6gene4843Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03740.1NO12G03740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03740 ID=NO12G03740|Name=NO12G03740|organism=Nannochloropsis oceanica|type=gene|length=2304bp
ATGGGTCAATCAAAgtaagtattgtttctatcaatatagccatgcttgcg
agcatcctgctcttttttcgctccagcacccatgctccccatgtctgccg
gcggccttggctcgtgccctcatcatcgaccccccatcgtttttacccaa
ccaaggcccttcccttttaagctcgtcatccctgtaaagtggtcgaaccc
cccctcccccttttgcaatacgagtgcacactcaacacttgatataagcg
tgtgcatattcaccatccctgtccccgtgtccctcactttccaatctccc
cctctctttttcacccttcctcttcctccttcatccttctcctcctcact
cacttcctcttcctttttcatccaaccagccaccaccgtcattggtgaga
gacatgatatcatttcttgtctccccccctcccctcaaacgtatatcggc
cttgtcttcccataattaaacaccttcactcaccccttcctcatcccttc
tctccctccttcatcccgatggcagAGGCGGAAACGTAAATATGCAATTG
GATCGATACCTCCGCTTCATGGGGAAACACCGCAACAGCCCCGCTGCCGC
GTGGGTCGGGTTTTTGCTCCTCTCCCTCGTGGTTTGGAAGCTAGTGAGTG
ACGGTGACTTTTCCTTCATCATGACGTATGGTGCCTTTGCCCGGTCCTTC
GGCTTTGGCCTGTTGGCTGTTAAGATATGGACGGCCAGAAGTGCTACGGG
GGTGTCGTTAAAGACCCTGCAGTTGTATGGCCTGgtgcgttagagggcga
gggaggggagggagggacgaagggagggagggaaggttacggcggcgttt
cgacttcggtgtttgtttatgggtgggatgccgtgtgactcaccctcgtt
ccctccctccctccccccctccctcttgtccgccttgatatcacgcacgg
ccagGTGTTCTTCTTCCGCCTCACGAGCATCATCCCTTTCTCGGGCTACC
TGCCCTACGACAAGAGCGGCGACTGGTTCTATCATTTTGTGgtacgtgcg
cctgcgaggcagggacggagggagggggggaaggacggagggaagcagtg
gaaggagggcagattggaacgaaaagggaaagaaacatgaagcaagattt
gactactcagccacccctctctccctcctccctcgtcctccctccctcct
tcccttcccccctccttttctcctcccagGAGTCCGTCTCTCTCTTCCTA
GTCCTCGTGGCCCTCTACCTCGTCAAGATTCGCTTCCCCCACTCATACGA
CGAGCGAACGGACAGTTTCGGGAACATGCACGTCCCGGATCAAGTCGGTG
CCCTGGTCTATCTCGCCATACCCTGTTTTCTCCTGGCCGTCCTGTTTCAT
CCGGgtaggttgctgtctgtctgtctgtctgtgtctgtctgtctgtgtgt
gtgtgtgtgtgtgtctctctctctctctctctctctctctctctctctct
ctctctctttctctctctctctctctctgtgttagtgtgcatgtcaaatc
ccctctctccctcctccatctcccccccctcccaatgccaggcatccacc
ccccctccctccctcctcccccccttcctcccccctccctccctccctcc
cccccttcctccccccagGCCTCAATTCGCATTTCCTCGCCGACACCACC
TGGGCCTTTTCCATGTACCTCGAGTCCGTTGCCATGCTCCCTCAGCTCTA
CATGTTCCAAAAACAGgtgcgcccctccctccctccctccctccctccct
ccctccctccagtcctcccaagtcgtggaggggctcaccggccgatgagt
ctttgccgcaggcttctcactccctccctccctccctccctccctccctc
cagTCCTCCCAAGTCGTGGAGGTGCTCATCGGCCACTGGGTCTTTGCCTC
GGGTTTTGCGCGAGTCCTGGACATGATCTTTTGGATGTCGTCTTACCACG
AGCTGGTCGACCACAGgtacgcccttcctccctccctccctccctccctc
tcttgcctggcctttggttgatcatgggcgtaaaatcgttggtccaggcc
gcctccattctcccttccttgacctaactccctccccccctccctccctc
cctccctcgcagCGGGTCCAAGATGGTGGGTGTCTTCGTCCTCCTCACGC
AGTTTATTCACATCATCCTCATGGTGGATTTTTTCTATTACTACCTCGTG
AGCGTACGGAGCGGTCTTCCCCTTCAATTGCCAAGGGCAGGGGGGCTGGT
GTAG
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protein sequence of NO12G03740.1

>NO12G03740.1-protein ID=NO12G03740.1-protein|Name=NO12G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MGQSKGGNVNMQLDRYLRFMGKHRNSPAAAWVGFLLLSLVVWKLVSDGDF
SFIMTYGAFARSFGFGLLAVKIWTARSATGVSLKTLQLYGLVFFFRLTSI
IPFSGYLPYDKSGDWFYHFVESVSLFLVLVALYLVKIRFPHSYDERTDSF
GNMHVPDQVGALVYLAIPCFLLAVLFHPGLNSHFLADTTWAFSMYLESVA
MLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSG
SKMVGVFVLLTQFIHIILMVDFFYYYLVSVRSGLPLQLPRAGGLV*
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Synonyms
Publications