NO12G03660, NO12G03660 (gene) Nannochloropsis oceanica

Overview
NameNO12G03660
Unique NameNO12G03660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2721
Alignment locationchr12:1011552..1014427 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1011552..1014427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010341NSK010341Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03660.3NO12G03660.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03660.2NO12G03660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G03660.1NO12G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03660.3NO12G03660.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03660.2NO12G03660.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G03660.1NO12G03660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03660 ID=NO12G03660|Name=NO12G03660|organism=Nannochloropsis oceanica|type=gene|length=2721bp
CAGAACACCATGGACATATTGCTGAACGCTATCAAAGAAGACGACGGCGG
GGCCAAGAAGAAGGGCGCACGGCCGGGAGCAGCGACAACTGCGACAGCAG
GAGTAAGCGTCGAGgtacgtgcgtatcgaggctttatagtgcacaggagc
atttatgcggtggggcgcaatgctgggggtgcagtgtctgggctggttgg
acagaagacagacgtggtatgaacgtcacgaagcgttgagtcacactgct
tgctgccttattcaacctgacctccacccagtcacaaacccaccgtgtcg
cccccctcttaattccacgatcccgctgacgaagGCACAGGATAATAGTC
CAGCCAGCAGCATCACCGGCGGCAAAAAGgtatgcgtgtgtgtgtgtttt
ctcctgtaactccccctcacctcccctcgctcccacctcagcccactcgc
cttccgtacattccccgtttctcactcacgtggtgttcatctttcttaaa
ccagCGCCGTCGTGCTGCGGCTGCTAGCACACTAGCACCTCCAGTAGCTG
CGGCTGTGGGTGCTACCGTGGCAGGTGAGCTTGGTGGTCCCAAAATTGAA
GGAGGAGAAGCAGGTGCAGCAGCTGCAGCAGCTGCAGCAGGGAGGGGAGC
CCTTGTGGGTGTAGGAGGGGTGGGGGAGGTGAAGAATGGAGGAGATTCCT
CTATGGCGGCACTGTACGCACGATTTCCTGCGCTTAATGAAGACGGCTAT
CCTATCTTGAACGGTGAGCCTCCGGGACTACCGGCACCCGCAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAAGAAGAGGAA
GAGGAGGGGGAGGAGAAGGAGGAAGAGGGGGAGGGACGCTGAGCCCGATG
CCTGTCTTGATGTATCATAACGAAGAGCCTCGCGGCCAGCCCAAGACAGA
CGCGCAACGCCAGCGGGAGTGCAGGGAGCGAAAGAAACGGTGGTTGAACA
ACATGGTGGGGAAGTACGAGGTTCTGGAGCGGACGAATGCAGGATTGAGG
GAGGAGTTGGAGAGGAAGGAAAAGATCATTCAAGCGCAGGCAGGGGAAAT
CAGTAGGTTGAGGAAGGCACTGGCCAAGGCGGCGGGAGGGGAAGGGGGAG
GAGCCGGTAGAGGGGAGCAGGAAAGCGAGGAGGAGATGAAGGAGGGGATA
GAGGGGATAGTGGTGGGACAATCGACTTGTCATGGTGGCGGTGAGGCTGC
TGCTGCTGCTGCGGCTGCTGCCGTTGGGGGCAGTAACGATCAAGCCCAGC
CGTTGATTTTACCCGCCTCGATAGCGCCGCAGGTGGAGGGAGGGGGGGGA
GGAGGAGGAGAAGTAGAAGGAGGGGAAGGACTGCTGCAGCCCTTGTCGCT
GCCGATAATGGTAATGCCAGACACGGGAGCTGGAGAGGTGGCAAGAGGGG
AAGCAGCGGCAGGAGTAGCAGCAGCACCGGCGGCCGGGGCGGCGGGAGAG
CTGTTACATGCTTATGAAGTATAGCAGTGAAGGAGGGAGGGAAGACGGAG
GGAGAGCATCCATGAGTTGAAGCAAAATTGACGAAGAGATGCAGGTGGAA
CAAAAGGATTCAGAATAGGGGAGAAGGAGGAGGGGGAGGAGTTTGAGAAG
GAGGATGTGGAGGAAGGAGGAGGGGGGGGGAAAAGAGGGAGCAAGTAGGA
GCAGGAGCAGGAGCTGGAGAATGAGGAAAAGAATTAGGCGGAGGAAAATC
TTGACACATAATTTTTTTATGGTTGTAGCAGAAGAAAAAAATGCCTTCAG
CCTTCACATATGATAGATTCACATTGTCGAGGGAGGGTATTAAGGAGGTC
AAGTGTCCGGGACACAAGAGAGAGAGAGAGAGAAAAAGGTGGAAAAAGGA
GGGAATTAGAAATAATTTTGAAAAATCGAATGATTATACCATGCAGTGAG
AGGGAGAGGAAGAGGGATGGGACGTGGAGGAGGGATAGGAAGCTTGGGTC
AGCCGACCCTCCGAAAGGAAAGGAAGGGACGAATGATAGAAACAGAGAGG
GAGTGAGGAGGAGGAGGAGAAGGAGGAGAAAAAGATGTTAGAGAAGAAAG
AGGTCACCACCATCACCACTGTCACCACAATACGATGATGATGATGATGA
TGATGATGATGATGATGATGATGATGATAACGACGATGAAGTAGCAGAAG
ATTAAGGGGAAGAAGTATAAACGAAAGAGACGGTGTAGTAGGAGGAGAGA
TACGAAAAATAAATGGAGCGAGGAGCGGGTCGGCTTCTTCTCGGTTGTCG
CTTCTTCTTTTCTATCTCTCTGCGTTTTTAGCCTCGCTTGCAGGCGCGTC
TTATACTTCGGCCTTTGTTGTGTCGGGGGTAAAAACGGGAGGAAAGCGGA
GGCCAAACGAAAAGAGGAGATGGATGGGAAAGAGAAAGTATAAGGGAAAG
GGCATGTCTGCTCATTCTCCGTGTCCGACTGTCGTCCACTTTTGGTCACT
AGCTCCAAGGACGAGAGACGGCTCTCCACCTCCTCCTCGCCCTTCCACTG
TCGCCTTCCCAATTCATCGTCTCTGTCCGGTGGGTCTTTCCTTTCTCATT
TTCAACCTCCCTCCCTTCCTTCCCTCCCTCCCTCCCTCCCTCACCCCCTC
TTACCTACCCGCCCTCGCAGGGACAATTCATAAATTTAAATTGCACATAC
AAAGCCGCTGCCCAACCCTCC
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protein sequence of NO12G03660.3

>NO12G03660.3-protein ID=NO12G03660.3-protein|Name=NO12G03660.3|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MRVCVFSPVTPPHLPSLPPQPTRLPYIPRFSLTWCSSFLNQRRRAAAAST
LAPPVAAAVGATVAGELGGPKIEGGEAGAAAAAAAAGRGALVGVGGVGEV
KNGGDSSMAALYARFPALNEDGYPILNGEPPGLPAPAGGGGGGGGGGGGG
GGGRRGRGGGGEGGRGGGTLSPMPVLMYHNEEPRGQPKTDAQRQRECRER
KKRWLNNMVGKYEVLERTNAGLREELERKEKIIQAQAGEISRLRKALAKA
AGGEGGGAGRGEQESEEEMKEGIEGIVVGQSTCHGGGEAAAAAAAAAVGG
SNDQAQPLILPASIAPQVEGGGGGGGEVEGGEGLLQPLSLPIMVMPDTGA
GEVARGEAAAGVAAAPAAGAAGELLHAYEV*
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protein sequence of NO12G03660.2

>NO12G03660.2-protein ID=NO12G03660.2-protein|Name=NO12G03660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRWGAMLGVQCLGWLDRRQTWYERHEALSHTACCLIQPDLHPVTNPPCRP
PLNSTIPLTKAQDNSPASSITGGKKRRRAAAASTLAPPVAAAVGATVAGE
LGGPKIEGGEAGAAAAAAAAGRGALVGVGGVGEVKNGGDSSMAALYARFP
ALNEDGYPILNGEPPGLPAPAGGGGGGGGGGGGGGGGRRGRGGGGEGGRG
GGTLSPMPVLMYHNEEPRGQPKTDAQRQRECRERKKRWLNNMVGKYEVLE
RTNAGLREELERKEKIIQAQAGEISRLRKALAKAAGGEGGGAGRGEQESE
EEMKEGIEGIVVGQSTCHGGGEAAAAAAAAAVGGSNDQAQPLILPASIAP
QVEGGGGGGGEVEGGEGLLQPLSLPIMVMPDTGAGEVARGEAAAGVAAAP
AAGAAGELLHAYEV*
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protein sequence of NO12G03660.1

>NO12G03660.1-protein ID=NO12G03660.1-protein|Name=NO12G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MDILLNAIKEDDGGAKKKGARPGAATTATAGVSVEAQDNSPASSITGGKK
RRRAAAASTLAPPVAAAVGATVAGELGGPKIEGGEAGAAAAAAAAGRGAL
VGVGGVGEVKNGGDSSMAALYARFPALNEDGYPILNGEPPGLPAPAGGGG
GGGGGGGGGGGGRRGRGGGGEGGRGGGTLSPMPVLMYHNEEPRGQPKTDA
QRQRECRERKKRWLNNMVGKYEVLERTNAGLREELERKEKIIQAQAGEIS
RLRKALAKAAGGEGGGAGRGEQESEEEMKEGIEGIVVGQSTCHGGGEAAA
AAAAAAVGGSNDQAQPLILPASIAPQVEGGGGGGGEVEGGEGLLQPLSLP
IMVMPDTGAGEVARGEAAAGVAAAPAAGAAGELLHAYEV*
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Synonyms
Publications