NO12G03580, NO12G03580 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03580 vs. NCBI_GenBank
Match: CBJ48363.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 124.8 bits (312), Expect = 1.000e-24 Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 0 Query: 216 RHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRP------------FVTAYADYVTFRALHFGPGYPEV 386 R R + RE K+ +SSE+EG ++KATRPD +KPKHLE L+ T + P + + +LP++RKLW+KM + + R++ KALYILHRFAA G+ E A NL+ + L DSR + + YFD + P F+ YAD+V R FGPG+ E+ Sbjct: 218 RQRASSAYREAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPTVEMPKEFNVYLPVVRKLWSKMADKEWRVSAKALYILHRFAADGSIEHASNLKESVAVLRTHHDSR-------------------RKVNYFDMDTICDVKAPSWSGEDVAPMAEFLQGYADFVLRRTTQFGPGFAEL 380
BLAST of NO12G03580 vs. NCBI_GenBank
Match: OEU15634.1 (hypothetical protein FRACYDRAFT_170332, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 121.7 bits (304), Expect = 8.700e-24 Identity = 71/164 (43.29%), Postives = 93/164 (56.71%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386 L RE+K SSELE ++KATRPD +K KH E L+ +TYQ + D + +LRKLWAKM E D R T+KALYILHRF+A G+P+ AP L+AR+ EL R D + K ++ D S + R F+ YA YV RA FG + E+ Sbjct: 29 LFREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGVTYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKALYILHRFSADGSPDHAPALKARVRELRRTRDPK-----------RKGKFFSSKLLQAGDDKPESAKFRAFMGRYAHYVLLRAQCFGGMFDEI 181
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_002181259.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47182.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 120.2 bits (300), Expect = 2.500e-23 Identity = 69/167 (41.32%), Postives = 95/167 (56.89%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEVGRE 389 + RE+K SSELE ++KATRPD +K KH+E L+ +TYQ + D + +LRKLW KM E D R T+K+LYILHRF+A GAPE A L+ARL EL R D + K + ++ + + R F++ YA YV RA FG + E+ +E Sbjct: 245 IYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGVTYQISPRYDIYDAVLRKLWGKMAEKDWRTTIKSLYILHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKYFNSKQLLAGESNPENIKFRAFMSRYAHYVLLRAQCFGGLFDEISQE 400
BLAST of NO12G03580 vs. NCBI_GenBank
Match: GAX19912.1 (hypothetical protein FisN_1Lh618 [Fistulifera solaris]) HSP 1 Score: 115.2 bits (287), Expect = 8.100e-22 Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386 L RE+K SSELE ++KAT+PD +K KH+E L+ +TYQ + D + +LRKLW KM E D R T+KA+YI+HRF+A GAPE A L+ARL EL R D + K + DT + + R F++ Y+ YV R +G + E+ Sbjct: 217 LYREVKGLTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGPKFDIYDAVLRKLWGKMVERDWRTTMKAVYIMHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKFFNTKQLLAGDTTPENVKFRAFLSRYSHYVLLRTQCYGGMFDEI 369
BLAST of NO12G03580 vs. NCBI_GenBank
Match: GAX28591.1 (hypothetical protein FisN_1Hh618 [Fistulifera solaris]) HSP 1 Score: 114.8 bits (286), Expect = 1.100e-21 Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMSTEGRPFVTAYADYVTFRALHFGPGYPEV 386 L RE+K SSELE ++KAT+PD +K KH+E L+ +TYQ + D + +LRKLW KM E D R T+KA+YI+HRF+A GAPE A L+ARL EL R D + K + DT + + R F++ Y+ YV R +G + E+ Sbjct: 216 LYREVKGFTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGPKFDIYDAVLRKLWGKMVEKDWRTTMKAVYIMHRFSADGAPEHAAALKARLRELRRTRDPK-----------RKDKFFNTKQLLAGDTTPENVKFRAFLSRYSHYVLLRTQCYGGMFDEI 368
BLAST of NO12G03580 vs. NCBI_GenBank
Match: EJK63810.1 (hypothetical protein THAOC_15514 [Thalassiosira oceanica]) HSP 1 Score: 104.8 bits (260), Expect = 1.100e-18 Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAM--------STEGRPFVTAYADYVTFRALHFGPGYPEV 386 L RE+K SSELE ++K+TRPD +K KH+E L+ +TYQ + D + +LRKLW KM E D R LK++Y+LHRF+ G PE L+ RL L + D + RYFD+ + ++ R F++ YA YV RA FG + E+ Sbjct: 215 LYREVKGLTSSELEQVMLKSTRPDETPVKTKHVERLVGVTYQISGKYDIYDAVLRKLWNKMAERDIRTKLKSVYVLHRFSVDGGPEHQEALKQRLRALRKTKDPKRSGGGGRGG-----------STRYFDSKVLIGPDNDPDNSGYRAFLSRYAHYVLTRAQTFGGVFNEI 375
BLAST of NO12G03580 vs. NCBI_GenBank
Match: CBN75765.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 84.0 bits (206), Expect = 2.000e-12 Identity = 64/202 (31.68%), Postives = 91/202 (45.05%), Query Frame = 0 Query: 214 GERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLL-AITYQTPAQLD------------PFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST---EGRPF---VTAYADYVTFRALHFGPGYPEVGREVGAAVERE 397 G H+G ++RELK ++SS+LE ++KATRPD K KH+ LL A + P ++ P+ L KLW +M E D R KA+Y+LHR A E ++ L E+ R D RYF +S +GRPF + AYA++V R F P E+ AA++ E Sbjct: 283 GVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDEDK-------------------GTKSRYFSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGEL-----AAIDAE 460
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_002288953.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94389.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.9 bits (185), Expect = 5.500e-10 Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0 Query: 222 LLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAITYQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFA 302 + RE+K SSELE ++KATRPD +K KH+E L+ +TYQ + D + +LRKLW KM E D R LK++ L R+A Sbjct: 243 IYREVKGLTSSELEQVMLKATRPDETPVKTKHVERLVGVTYQISGKYDIYDAVLRKLWNKMAEKDIRTKLKSVAFLSRYA 322
BLAST of NO12G03580 vs. NCBI_GenBank
Match: XP_005854255.1 (c2h2 zinc-finger protein, partial [Nannochloropsis gaditana CCMP526] >EKU22106.1 c2h2 zinc-finger protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 67.8 bits (164), Expect = 1.500e-7 Identity = 53/195 (27.18%), Postives = 79/195 (40.51%), Query Frame = 0 Query: 213 RGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAIT------YQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST----------------EGRPFVTAYADYVTFRALHFGPGYPEV 386 +G +G+ + RELK S + E ++KATRPD + P+ + +L T A +P+ LRKLWAKM E D R KALY+ H P+ + +++R+ RYFD GA+S + R F+ Y+ YV RA F + E+ Sbjct: 232 QGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHRDEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVFAKMSRE-------------------GCKKSRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEM 407
BLAST of NO12G03580 vs. NCBI_GenBank
Match: EWM29224.1 (Epsin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 67.4 bits (163), Expect = 1.900e-7 Identity = 53/195 (27.18%), Postives = 79/195 (40.51%), Query Frame = 0 Query: 213 RGERHRGRTLLRELKAALSSELEGEIVKATRPDTRQIKPKHLEPLLAIT------YQTPAQLDPFLPILRKLWAKMREGDSRITLKALYILHRFAASGAPEQAPNLQARLGELTRQMDSRXXXXXXXXXXXXXXXXXXXKHIRYFDTGAMST----------------EGRPFVTAYADYVTFRALHFGPGYPEV 386 +G +G+ + RELK S + E ++KATRPD + P+ + +L T A +P+ LRKLWAKM E D R KALY+ H P+ + +++R+ RYFD GA+S + R F+ Y+ YV RA F + E+ Sbjct: 232 QGMASKGKKMTRELKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATATFHRDEDLTAGSNPYRVTLRKLWAKMAERDWRTVAKALYLFHVLLRECEPDDVRIYKKVCAKMSRE-------------------GCKKSRSRYFDAGAISAVDVMDGAGVGGAGACLDRRDFIARYSKYVLQRAKTFTSKFEEM 407 The following BLAST results are available for this feature:
BLAST of NO12G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 10
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03580 ID=NO12G03580|Name=NO12G03580|organism=Nannochloropsis oceanica|type=gene|length=2433bpback to top protein sequence of NO12G03580.1 >NO12G03580.1-protein ID=NO12G03580.1-protein|Name=NO12G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=676bpback to top Synonyms
Publications
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