NO12G03540, NO12G03540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03540 vs. NCBI_GenBank
Match: EWM25690.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 412.1 bits (1058), Expect = 1.800e-111 Identity = 221/295 (74.92%), Postives = 245/295 (83.05%), Query Frame = 0 Query: 98 DLVENIGRLGLGLGALTLLPSLTVSAAA----DRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYD-KKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV 388 +L+E+ GRLG+GLGA L P + SA A AP+AVLGARGKTG+LIVQQLLA+GK VRALSYQPFEYD KKD+P VD+ SLLTYAIGDVTK +TL AI+G+SAVIFA+SASK GG AQAVDCDGVENIAR+ I+EKIPRLLVISSGAVTKPDSFGYK+TN+FARGIMGLKLEGE+RLRALY SSAP GVTYTVLRPGGLSNDKGLGV G+ELNQKDTIIGEISR DVAA FEVYEIGRRTPLQ EFP++SGMERRA WE+IFKGLVKD LQ+ Sbjct: 75 ELLESYGRLGVGLGASALFPWIPSSALAASRPSSDAPVAVLGARGKTGRLIVQQLLAEGKQVRALSYQPFEYDAKKDLPVNVDL-SLLTYAIGDVTKYDTLPDAIRGSSAVIFASSASKKGGNAQAVDCDGVENIARAAISEKIPRLLVISSGAVTKPDSFGYKITNMFARGIMGLKLEGEDRLRALYRSSAPAGVTYTVLRPGGLSNDKGLGVIGLELNQKDTIIGEISRNDVAAVAVHAITAPEAADVTFEVYEIGRRTPLQPEFPKESGMERRAEKWEDIFKGLVKDQDLQI 368
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CBJ33213.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 221.1 bits (562), Expect = 6.000e-54 Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 0 Query: 113 LTLLPSLTVSAAAD----RSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGL 380 L LL + +A+A + +PIAV+GA GKTGKL V+ LL +G+ VRA++ + E+ G DV L+T A GDVTK +TL A+ G AV+F ASASK GG A+AVD GV N A++C+ IPRL+VISSGAVTKPDS G+KVTN+F IM LK +GE L +YA +AP G+TYT++RPGGL++ +G +GIELNQ DTI G + R DVA FE+Y+ R PLQ P+ SG ER ++E +FKGL Sbjct: 42 LRLLTGVDTAASASEPGTKQSPIAVVGAGGKTGKLAVEGLLKRGRNVRAVT-RTGEFSL----GGGDVGDLMTTAAGDVTKTDTLKQALAGCGAVLFCASASKKGGNAEAVDYQGVLNAAQACVELGIPRLVVISSGAVTKPDSLGFKVTNVFG-NIMTLKRKGEIGLEEIYA-AAPKGLTYTIVRPGGLTDGAVIGPAGIELNQGDTIGGTVGRGDVAEVVVEAALSPATENTIFEIYDKKSRGPLQGGLPKTSGYERTGESYEAMFKGL 305
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CEM12705.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 206.5 bits (524), Expect = 1.500e-49 Identity = 123/268 (45.90%), Postives = 162/268 (60.45%), Query Frame = 0 Query: 122 SAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTN---LFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQ 387 +A +A + VLGA G+TG+LIV+ L +G+ VRA + P D+ S T AI DV ++ ++G S VIFAASASK GGKA AVD GVEN+A++C+ E + RL+++SSGAVT+PDS GYK+TN L IMG K +GE+ LRALY SSA P +YT++RPGGL + + G S +E+NQ D EI R DVAAT EVY+ R PL+ FP SG ERR +++E+F GL D LQ Sbjct: 54 AAVKPSAASVCVLGAGGRTGRLIVELLAQEGRAVRAGTRGPPPASSSDLVS--------TSAI-DVKDLPSVRQGVRGCSGVIFAASASKAGGKAAAVDYLGVENVAKACLEEGVERLVLLSSGAVTRPDSVGYKLTNFLTLDKGDIMGNKRKGEDALRALYKSSAKPNQSYTIIRPGGLRDAEPAGPSQLEINQGDYFFSEIPRADVAATAVSALFSPYTRGVTMEVYKAEGRFPLEGGFPPNSGFERRGNSFDELFSGLKSDQELQ 312
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_002181722.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46936.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 179.1 bits (453), Expect = 2.600e-41 Identity = 119/281 (42.35%), Postives = 158/281 (56.23%), Query Frame = 0 Query: 116 LPSLTVSAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSA-PPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA-TXXXXXXXXXXXXXXFEVYEIGRRTPL----------QKEFPE--KSGMERRAGTWEEIFKGLVKD 383 L + + A S+PI V+GA G+TG VQ + +G VRA S + +G S L+ DVTKP T+S AI+ AVIF ASASKNGG VD DG+ N+AR+C+A+KIP L+V+SSGAVTKP+S ++ NLF + IM K++GE+ +R LY+ S P + YTV+RPGGL+ D GV+ +ELNQ DT G I+R DVAA FE Y+ PL QK P SG E T+E++F GL +D Sbjct: 94 LAAFAGNTIAVESSPICVIGANGRTGSQCVQACVERGIPVRATS-------RSGTYNGDSSSKLVALLPCDVTKPATISRAIERCQAVIFCASASKNGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLNLFGK-IMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEATRYPGLTGFATFECYDSDTGKPLSTVGISNILKQKAAPADFTSGTEHVGETFEKLFTGLQRD 366
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_005825042.1 (hypothetical protein GUITHDRAFT_89487 [Guillardia theta CCMP2712] >EKX38062.1 hypothetical protein GUITHDRAFT_89487 [Guillardia theta CCMP2712]) HSP 1 Score: 178.3 bits (451), Expect = 4.500e-41 Identity = 123/300 (41.00%), Postives = 163/300 (54.33%), Query Frame = 0 Query: 111 GALT--LLPSLTVS-------AAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPP----GVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQ-----KEFPEK----------SGMERRAGTWEEIFKGLVKD 383 GAL+ L P L +S AAA IAV+GA G TGK V L+ +G VRA+ KD D SSL++ IGD+T P+TL ++KG A+IFAASASK GG + VD G+ N A+ CI + I RL+V+SSGAV++PDS YK NLF IM K++GEN ++ +Y S+ +YT++RPGGL+ LGVS +ELNQ DT G I+R DVA FE Y PL+ F +K +G ER+A +W ++F GL KD Sbjct: 4 GALSSLLAPLLGISVAVSDSLAAAPTGGSIAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLEGD-SSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFG-SIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSDTEAQSIMTGKERQADSWPKLFAGLDKD 301
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CBN74033.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 176.8 bits (447), Expect = 1.300e-40 Identity = 118/292 (40.41%), Postives = 162/292 (55.48%), Query Frame = 0 Query: 105 RLGLGLGALTLLPSL-TVSAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPL----------QK--EFPEKSGMERRAGTWEEIFKGLVKDS 384 R+G L A+ + +L A+A S+ + VLGA GKTG+ V+ L ++G VRA++ +K+ P + +T DVT P +L IKGASAVIFA+SASK GG A+AVD +GV N+A++C+ K+PRL+V+SSG V P+S YK NLF IM K++GE++LR++YA A YT++RPGGL+ D GV IELNQ DT G I+R DVA E Y PL QK + + G E TW+ +F GL D+ Sbjct: 85 RVGASLAAMAPVFALGKEDASAATSSDVTVLGAGGKTGRECVEYLASKGTGVRAVARS--LTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGSAKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLNLFGE-IMSWKIQGEDQLRSMYA--AQDVCHYTIVRPGGLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAKPLAAVGVSNILKQKTDDTAKSFGTESTGDTWDALFSGLKHDA 371
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_002508414.1 (hypothetical protein MICPUN_108991 [Micromonas commoda] >ACO69672.1 hypothetical protein MICPUN_108991 [Micromonas commoda]) HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35 Identity = 115/280 (41.07%), Postives = 144/280 (51.43%), Query Frame = 0 Query: 124 AADRSAPIAVLGARGKTGKLIVQQLLAQG----KCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPET--LSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA--TXXXXXXXXXXXXXXFEVYEIGRRTPL------------QKEFPEKSGMERRAGTWEEIFKGLVKDS 384 A+ A I V G+ GKTG VQ G C R+ S+ P ++I D SL+T A GDV K L+ ++GA A IFAASAS +GG Q VD G+ +AR+CIA +PRL+++SSG+V+KP S Y NLF GIM K+EGE+ +R+LY G Y V+RPGGL+ D+ GV IELNQ D G ISR DVAA FE Y L + SGMERR TW EIF GL D+ Sbjct: 48 ASPAPAQIVVFGSNGKTGARCVQYAARAGIPVTACTRSGSWSP-----QNINLTSDERSLVTAAAGDVAKASAAELTSTLQGAGACIFAASASPSGGSPQDVDKAGLVAVARACIAANVPRLVIVSSGSVSKPLSPVYVFLNLFG-GIMRAKIEGEDAVRSLYFKR--DGADYVVVRPGGLTEDEPRGVGAIELNQGDDKSGRISRSDVAAICVEAAVGANGCVGNSTFECYWADSAKGLDAVGFSNMMGGTNTDGDYVSGMERRGNTWNEIFAGLKADA 319
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_003058959.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH57414.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 154.8 bits (390), Expect = 5.300e-34 Identity = 110/272 (40.44%), Postives = 138/272 (50.74%), Query Frame = 0 Query: 130 PIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPE--TLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA---TXXXXXXXXXXXXXXFEVY---------EIGRRTPL---QKEFPEKSGMERRAGTWEEIFKGLVKDSA 385 PI V GA GKTGK V G V A + + + D+ D L+T GDV+K L + GA A+IFAASAS GG Q VD G+ +AR+ IA +PRL+++SSG+V+KP S Y N F GIM K+EGE+ +RALY + Y +RPGGL+ D G GV IELNQ D G ISR DVAA FE Y E+G + E SG ERR +WEE+F GL D+A Sbjct: 63 PIVVFGANGKTGKRCVAHAAKAGVPVVACT-RSGSFASADLAMSADDQKLVTAKAGDVSKASQAELEALVSGAGAIIFAASASPGGGSPQDVDKAGLVAVARAAIAANVPRLVIVSSGSVSKPLSPVYVFLNFFG-GIMRAKIEGEDAVRALYFNR--EDADYVCVRPGGLTEDPGQGVRAIELNQGDDKSGRISREDVAAICVEAARAAGTPAAKNATFECYWKDTAKSLGEVGLSNMMGGTSNEAEYVSGKERRGESWEELFDGLESDAA 330
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_003080990.2 (NAD(P)-binding domain [Ostreococcus tauri] >CEG01640.1 NAD(P)-binding domain [Ostreococcus tauri]) HSP 1 Score: 151.8 bits (382), Expect = 4.500e-33 Identity = 107/284 (37.68%), Postives = 144/284 (50.70%), Query Frame = 0 Query: 119 LTVSAAADRSAPIAVLGARGKTGKLIVQQLLAQG------KCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQK-------------EFPEKSGMERRAGTWEEIFKGLVKDS 384 L +A+ S + V+GA GKTG+ V+ L + C R+ +Y+ D + +V+S L+ GA AVIFAAS S++GG A VD DGV AR+C+ + R +++SSGAV+KP S Y NLF GIM K+ GE+ +RALY PG YTV+RPGGLS D GVS +ELNQ D + G ISR DVAA FE Y PL + + +K+G ERR +W+E+F GL D+ Sbjct: 41 LAQPSASLASDKVVVIGANGKTGRRCVEYLRSSTDAKEIVACTRSGTYEGGAADDRVKARAANVAS---------ASVAELANEFAGAKAVIFAASQSQSGGTASQVDRDGVITCARACLRAGVERFVIVSSGAVSKPASPVYIFLNLFG-GIMRNKILGEDAVRALYFDR--PGQFYTVVRPGGLSEDPARGVSALELNQGDEMSGRISREDVAAICIESISREDAANATFECYNWDAAKPLGEVGLSNMMKATNDGDGVQKTGSERRGSSWDELFAGLRADA 312
BLAST of NO12G03540 vs. NCBI_GenBank
Match: GAX25381.1 (hypothetical protein FisN_5Lh478 [Fistulifera solaris]) HSP 1 Score: 149.4 bits (376), Expect = 2.200e-32 Identity = 99/268 (36.94%), Postives = 147/268 (54.85%), Query Frame = 0 Query: 129 APIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASAS--KNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFAR-----GIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVA-ATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAG--TWEEIFKGLVKDSALQ 387 +PI VLGA GK GKL + L QG VRA + +K+ P ++YA DVT+ E+L ++KGAS VIFAASAS K GG+ AVD G+ N A++C+ +K+ +L+V+S+ T+PDS G+K TN F + IM K+ GE +R LYAS+ G Y V+RPGGL++ K +G + + ++Q D E+SR DVA T FE+ + K+ P+ AG +++ + GL+ D ++ Sbjct: 91 SPIVVLGAGGKVGKLCTEILANQGLYVRATTRSGRSILEKESP-------FVSYAQADVTQLESLENSVKGASGVIFAASASGKKKGGEPVAVDYLGLYNAAKACLDQKVSKLVVVSAATATRPDSLGFKATNYFVKFVYGDRIMDSKIAGEAAMRDLYASAGSKG--YAVVRPGGLNDKKSVGPAKVHVSQGDVYASEVSREDVALVTVATLLKGAATDGVTFELNQEEGLAKALKDLPDPPAELVHAGAPSFDALLDGLLTDEQIK 349 The following BLAST results are available for this feature:
BLAST of NO12G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03540 ID=NO12G03540|Name=NO12G03540|organism=Nannochloropsis oceanica|type=gene|length=1164bpback to top protein sequence of NO12G03540.1 >NO12G03540.1-protein ID=NO12G03540.1-protein|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bpback to top Synonyms
Publications
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