NO12G03540, NO12G03540 (gene) Nannochloropsis oceanica

Overview
NameNO12G03540
Unique NameNO12G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr12:967835..968998 +

Link to JBrowse

Properties
Property NameValue
DescriptionNad-dependent epimerase dehydratase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:967835..968998 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR016040NAD(P)-bd_dom
Homology
BLAST of NO12G03540 vs. NCBI_GenBank
Match: EWM25690.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 412.1 bits (1058), Expect = 1.800e-111
Identity = 221/295 (74.92%), Postives = 245/295 (83.05%), Query Frame = 0
Query:   98 DLVENIGRLGLGLGALTLLPSLTVSAAA----DRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYD-KKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV 388
            +L+E+ GRLG+GLGA  L P +  SA A       AP+AVLGARGKTG+LIVQQLLA+GK VRALSYQPFEYD KKD+P  VD+ SLLTYAIGDVTK +TL  AI+G+SAVIFA+SASK GG AQAVDCDGVENIAR+ I+EKIPRLLVISSGAVTKPDSFGYK+TN+FARGIMGLKLEGE+RLRALY SSAP GVTYTVLRPGGLSNDKGLGV G+ELNQKDTIIGEISR DVAA               FEVYEIGRRTPLQ EFP++SGMERRA  WE+IFKGLVKD  LQ+
Sbjct:   75 ELLESYGRLGVGLGASALFPWIPSSALAASRPSSDAPVAVLGARGKTGRLIVQQLLAEGKQVRALSYQPFEYDAKKDLPVNVDL-SLLTYAIGDVTKYDTLPDAIRGSSAVIFASSASKKGGNAQAVDCDGVENIARAAISEKIPRLLVISSGAVTKPDSFGYKITNMFARGIMGLKLEGEDRLRALYRSSAPAGVTYTVLRPGGLSNDKGLGVIGLELNQKDTIIGEISRNDVAAVAVHAITAPEAADVTFEVYEIGRRTPLQPEFPKESGMERRAEKWEDIFKGLVKDQDLQI 368          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CBJ33213.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 221.1 bits (562), Expect = 6.000e-54
Identity = 133/271 (49.08%), Postives = 174/271 (64.21%), Query Frame = 0
Query:  113 LTLLPSLTVSAAAD----RSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGL 380
            L LL  +  +A+A     + +PIAV+GA GKTGKL V+ LL +G+ VRA++ +  E+       G DV  L+T A GDVTK +TL  A+ G  AV+F ASASK GG A+AVD  GV N A++C+   IPRL+VISSGAVTKPDS G+KVTN+F   IM LK +GE  L  +YA +AP G+TYT++RPGGL++   +G +GIELNQ DTI G + R DVA                FE+Y+   R PLQ   P+ SG ER   ++E +FKGL
Sbjct:   42 LRLLTGVDTAASASEPGTKQSPIAVVGAGGKTGKLAVEGLLKRGRNVRAVT-RTGEFSL----GGGDVGDLMTTAAGDVTKTDTLKQALAGCGAVLFCASASKKGGNAEAVDYQGVLNAAQACVELGIPRLVVISSGAVTKPDSLGFKVTNVFG-NIMTLKRKGEIGLEEIYA-AAPKGLTYTIVRPGGLTDGAVIGPAGIELNQGDTIGGTVGRGDVAEVVVEAALSPATENTIFEIYDKKSRGPLQGGLPKTSGYERTGESYEAMFKGL 305          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CEM12705.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 206.5 bits (524), Expect = 1.500e-49
Identity = 123/268 (45.90%), Postives = 162/268 (60.45%), Query Frame = 0
Query:  122 SAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTN---LFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQ 387
            +A    +A + VLGA G+TG+LIV+ L  +G+ VRA +  P      D+ S        T AI DV    ++   ++G S VIFAASASK GGKA AVD  GVEN+A++C+ E + RL+++SSGAVT+PDS GYK+TN   L    IMG K +GE+ LRALY SSA P  +YT++RPGGL + +  G S +E+NQ D    EI R DVAAT               EVY+   R PL+  FP  SG ERR  +++E+F GL  D  LQ
Sbjct:   54 AAVKPSAASVCVLGAGGRTGRLIVELLAQEGRAVRAGTRGPPPASSSDLVS--------TSAI-DVKDLPSVRQGVRGCSGVIFAASASKAGGKAAAVDYLGVENVAKACLEEGVERLVLLSSGAVTRPDSVGYKLTNFLTLDKGDIMGNKRKGEDALRALYKSSAKPNQSYTIIRPGGLRDAEPAGPSQLEINQGDYFFSEIPRADVAATAVSALFSPYTRGVTMEVYKAEGRFPLEGGFPPNSGFERRGNSFDELFSGLKSDQELQ 312          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_002181722.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46936.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 179.1 bits (453), Expect = 2.600e-41
Identity = 119/281 (42.35%), Postives = 158/281 (56.23%), Query Frame = 0
Query:  116 LPSLTVSAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSA-PPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA-TXXXXXXXXXXXXXXFEVYEIGRRTPL----------QKEFPE--KSGMERRAGTWEEIFKGLVKD 383
            L +   +  A  S+PI V+GA G+TG   VQ  + +G  VRA S       +    +G   S L+     DVTKP T+S AI+   AVIF ASASKNGG    VD DG+ N+AR+C+A+KIP L+V+SSGAVTKP+S  ++  NLF + IM  K++GE+ +R LY+ S   P + YTV+RPGGL+ D   GV+ +ELNQ DT  G I+R DVAA                FE Y+     PL          QK  P    SG E    T+E++F GL +D
Sbjct:   94 LAAFAGNTIAVESSPICVIGANGRTGSQCVQACVERGIPVRATS-------RSGTYNGDSSSKLVALLPCDVTKPATISRAIERCQAVIFCASASKNGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLNLFGK-IMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEATRYPGLTGFATFECYDSDTGKPLSTVGISNILKQKAAPADFTSGTEHVGETFEKLFTGLQRD 366          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_005825042.1 (hypothetical protein GUITHDRAFT_89487 [Guillardia theta CCMP2712] >EKX38062.1 hypothetical protein GUITHDRAFT_89487 [Guillardia theta CCMP2712])

HSP 1 Score: 178.3 bits (451), Expect = 4.500e-41
Identity = 123/300 (41.00%), Postives = 163/300 (54.33%), Query Frame = 0
Query:  111 GALT--LLPSLTVS-------AAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPP----GVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQ-----KEFPEK----------SGMERRAGTWEEIFKGLVKD 383
            GAL+  L P L +S       AAA     IAV+GA G TGK  V  L+ +G  VRA+         KD     D SSL++  IGD+T P+TL  ++KG  A+IFAASASK GG  + VD  G+ N A+ CI + I RL+V+SSGAV++PDS  YK  NLF   IM  K++GEN ++ +Y S+         +YT++RPGGL+    LGVS +ELNQ DT  G I+R DVA                FE Y      PL+       F +K          +G ER+A +W ++F GL KD
Sbjct:    4 GALSSLLAPLLGISVAVSDSLAAAPTGGSIAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLEGD-SSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFG-SIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSDTEAQSIMTGKERQADSWPKLFAGLDKD 301          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: CBN74033.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.8 bits (447), Expect = 1.300e-40
Identity = 118/292 (40.41%), Postives = 162/292 (55.48%), Query Frame = 0
Query:  105 RLGLGLGALTLLPSL-TVSAAADRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPL----------QK--EFPEKSGMERRAGTWEEIFKGLVKDS 384
            R+G  L A+  + +L    A+A  S+ + VLGA GKTG+  V+ L ++G  VRA++      +K+  P     +  +T    DVT P +L   IKGASAVIFA+SASK GG A+AVD +GV N+A++C+  K+PRL+V+SSG V  P+S  YK  NLF   IM  K++GE++LR++YA  A     YT++RPGGL+ D   GV  IELNQ DT  G I+R DVA                 E Y      PL          QK  +  +  G E    TW+ +F GL  D+
Sbjct:   85 RVGASLAAMAPVFALGKEDASAATSSDVTVLGAGGKTGRECVEYLASKGTGVRAVARS--LTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGSAKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLNLFGE-IMSWKIQGEDQLRSMYA--AQDVCHYTIVRPGGLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAKPLAAVGVSNILKQKTDDTAKSFGTESTGDTWDALFSGLKHDA 371          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_002508414.1 (hypothetical protein MICPUN_108991 [Micromonas commoda] >ACO69672.1 hypothetical protein MICPUN_108991 [Micromonas commoda])

HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35
Identity = 115/280 (41.07%), Postives = 144/280 (51.43%), Query Frame = 0
Query:  124 AADRSAPIAVLGARGKTGKLIVQQLLAQG----KCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPET--LSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA--TXXXXXXXXXXXXXXFEVYEIGRRTPL------------QKEFPEKSGMERRAGTWEEIFKGLVKDS 384
            A+   A I V G+ GKTG   VQ     G     C R+ S+ P     ++I    D  SL+T A GDV K     L+  ++GA A IFAASAS +GG  Q VD  G+  +AR+CIA  +PRL+++SSG+V+KP S  Y   NLF  GIM  K+EGE+ +R+LY      G  Y V+RPGGL+ D+  GV  IELNQ D   G ISR DVAA                 FE Y       L              +    SGMERR  TW EIF GL  D+
Sbjct:   48 ASPAPAQIVVFGSNGKTGARCVQYAARAGIPVTACTRSGSWSP-----QNINLTSDERSLVTAAAGDVAKASAAELTSTLQGAGACIFAASASPSGGSPQDVDKAGLVAVARACIAANVPRLVIVSSGSVSKPLSPVYVFLNLFG-GIMRAKIEGEDAVRSLYFKR--DGADYVVVRPGGLTEDEPRGVGAIELNQGDDKSGRISRSDVAAICVEAAVGANGCVGNSTFECYWADSAKGLDAVGFSNMMGGTNTDGDYVSGMERRGNTWNEIFAGLKADA 319          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_003058959.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH57414.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 154.8 bits (390), Expect = 5.300e-34
Identity = 110/272 (40.44%), Postives = 138/272 (50.74%), Query Frame = 0
Query:  130 PIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPE--TLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAA---TXXXXXXXXXXXXXXFEVY---------EIGRRTPL---QKEFPEKSGMERRAGTWEEIFKGLVKDSA 385
            PI V GA GKTGK  V      G  V A + +   +   D+    D   L+T   GDV+K     L   + GA A+IFAASAS  GG  Q VD  G+  +AR+ IA  +PRL+++SSG+V+KP S  Y   N F  GIM  K+EGE+ +RALY +       Y  +RPGGL+ D G GV  IELNQ D   G ISR DVAA                  FE Y         E+G    +     E    SG ERR  +WEE+F GL  D+A
Sbjct:   63 PIVVFGANGKTGKRCVAHAAKAGVPVVACT-RSGSFASADLAMSADDQKLVTAKAGDVSKASQAELEALVSGAGAIIFAASASPGGGSPQDVDKAGLVAVARAAIAANVPRLVIVSSGSVSKPLSPVYVFLNFFG-GIMRAKIEGEDAVRALYFNR--EDADYVCVRPGGLTEDPGQGVRAIELNQGDDKSGRISREDVAAICVEAARAAGTPAAKNATFECYWKDTAKSLGEVGLSNMMGGTSNEAEYVSGKERRGESWEELFDGLESDAA 330          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: XP_003080990.2 (NAD(P)-binding domain [Ostreococcus tauri] >CEG01640.1 NAD(P)-binding domain [Ostreococcus tauri])

HSP 1 Score: 151.8 bits (382), Expect = 4.500e-33
Identity = 107/284 (37.68%), Postives = 144/284 (50.70%), Query Frame = 0
Query:  119 LTVSAAADRSAPIAVLGARGKTGKLIVQQLLAQG------KCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATXXXXXXXXXXXXXXFEVYEIGRRTPLQK-------------EFPEKSGMERRAGTWEEIFKGLVKDS 384
            L   +A+  S  + V+GA GKTG+  V+ L +         C R+ +Y+    D +      +V+S              L+    GA AVIFAAS S++GG A  VD DGV   AR+C+   + R +++SSGAV+KP S  Y   NLF  GIM  K+ GE+ +RALY     PG  YTV+RPGGLS D   GVS +ELNQ D + G ISR DVAA               FE Y      PL +             +  +K+G ERR  +W+E+F GL  D+
Sbjct:   41 LAQPSASLASDKVVVIGANGKTGRRCVEYLRSSTDAKEIVACTRSGTYEGGAADDRVKARAANVAS---------ASVAELANEFAGAKAVIFAASQSQSGGTASQVDRDGVITCARACLRAGVERFVIVSSGAVSKPASPVYIFLNLFG-GIMRNKILGEDAVRALYFDR--PGQFYTVVRPGGLSEDPARGVSALELNQGDEMSGRISREDVAAICIESISREDAANATFECYNWDAAKPLGEVGLSNMMKATNDGDGVQKTGSERRGSSWDELFAGLRADA 312          
BLAST of NO12G03540 vs. NCBI_GenBank
Match: GAX25381.1 (hypothetical protein FisN_5Lh478 [Fistulifera solaris])

HSP 1 Score: 149.4 bits (376), Expect = 2.200e-32
Identity = 99/268 (36.94%), Postives = 147/268 (54.85%), Query Frame = 0
Query:  129 APIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASAS--KNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFAR-----GIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVA-ATXXXXXXXXXXXXXXFEVYEIGRRTPLQKEFPEKSGMERRAG--TWEEIFKGLVKDSALQ 387
            +PI VLGA GK GKL  + L  QG  VRA +       +K+ P        ++YA  DVT+ E+L  ++KGAS VIFAASAS  K GG+  AVD  G+ N A++C+ +K+ +L+V+S+   T+PDS G+K TN F +      IM  K+ GE  +R LYAS+   G  Y V+RPGGL++ K +G + + ++Q D    E+SR DVA  T              FE+ +        K+ P+       AG  +++ +  GL+ D  ++
Sbjct:   91 SPIVVLGAGGKVGKLCTEILANQGLYVRATTRSGRSILEKESP-------FVSYAQADVTQLESLENSVKGASGVIFAASASGKKKGGEPVAVDYLGLYNAAKACLDQKVSKLVVVSAATATRPDSLGFKATNYFVKFVYGDRIMDSKIAGEAAMRDLYASAGSKG--YAVVRPGGLNDKKSVGPAKVHVSQGDVYASEVSREDVALVTVATLLKGAATDGVTFELNQEEGLAKALKDLPDPPAELVHAGAPSFDALLDGLLTDEQIK 349          
The following BLAST results are available for this feature:
BLAST of NO12G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25690.11.800e-11174.92nad-dependent epimerase dehydratase [Nannochlorops... [more]
CBJ33213.16.000e-5449.08conserved unknown protein [Ectocarpus siliculosus][more]
CEM12705.11.500e-4945.90unnamed protein product [Vitrella brassicaformis C... [more]
XP_002181722.12.600e-4142.35predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005825042.14.500e-4141.00hypothetical protein GUITHDRAFT_89487 [Guillardia ... [more]
CBN74033.11.300e-4040.41conserved unknown protein [Ectocarpus siliculosus][more]
XP_002508414.12.200e-3541.07hypothetical protein MICPUN_108991 [Micromonas com... [more]
XP_003058959.15.300e-3440.44predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_003080990.24.500e-3337.68NAD(P)-binding domain [Ostreococcus tauri] >CEG016... [more]
GAX25381.12.200e-3236.94hypothetical protein FisN_5Lh478 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010318NSK010318Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03540.1NO12G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639941gene_5529Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100279g6gene4824Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03540.1NO12G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03540 ID=NO12G03540|Name=NO12G03540|organism=Nannochloropsis oceanica|type=gene|length=1164bp
ATGAGCAGAACGTGCCCGTTGCAGCGCCGTCGTCCTCACACGAGTTTTAT
CCTGCAAATAAAGATGCCTCGCTCTACATACCTCCCCGCGGCAACAGCTA
TAGGCCTCCCATTCGTCCTTCTCCTCCTCGTCCTGCCCGCCATGTTGGCC
TTTCTATCCCCCACGACCACCGTATATCATCATCATATCATCAGTACGAA
AGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCTCTCTATTGG
CCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGGGACCTTGTC
GAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCACCCTCCTCCC
CTCCCTCACCGTCTCTGCCGCAGCCGACCGTAGCGCACCGATTGCCGTCC
TCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAACTCCTGGCG
CAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGAGTACGACAA
AAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCACTTACGCCA
TTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATCAAGGGAGCG
AGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGGGAAAGCCCA
AGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTTGCATCGCGG
AGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTCACCAAGCCC
GATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGGGATCATGGG
CCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATGCTTCCTCTG
CCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGCCTGTCAAAT
GACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAAGGATACGAT
CATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGGTAGCAGCAA
TAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTATGAAATCGGG
AGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGGGATGGAAAG
GAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGAAGGATAGCG
CGCTACAGGTATAG
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protein sequence of NO12G03540.1

>NO12G03540.1-protein ID=NO12G03540.1-protein|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSRTCPLQRRRPHTSFILQIKMPRSTYLPAATAIGLPFVLLLLVLPAMLA
FLSPTTTVYHHHIISTKASSSSASFSSAPSSLLASTSTSSSSSSSRRDLV
ENIGRLGLGLGALTLLPSLTVSAAADRSAPIAVLGARGKTGKLIVQQLLA
QGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGA
SAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKP
DSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSN
DKGLGVSGIELNQKDTIIGEISRVDVAATAVAAIGAADAADVTFEVYEIG
RRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV*
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Synonyms
Publications