NO12G03490, NO12G03490 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_005853796.1 (low-co2-inducible protein, partial [Nannochloropsis gaditana CCMP526] >EKU22564.1 low-co2-inducible protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 173.7 bits (439), Expect = 2.300e-39 Identity = 133/310 (42.90%), Postives = 171/310 (55.16%), Query Frame = 0 Query: 490 TTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHRVVKESWG-GRVVGGRFDAGGGSAETRGGRGGRR 799 T H+ PC CGR FN+RAL VH RVC+KVF STRP ++SRQ R +G E+ K XXXXXXXXXXXXX D+ D + ++ RP + V R+ ++ T T+ + P ++ GKKWL+QSQ FR ML+ANR +A AE++GRPVSPTLLA L+SSA+AASG +Q L+PCPHC R++NEQAA RHIPKC+DI+AKPS L KG+G+ LGA R K G GR++ G A GS +G R R+ Sbjct: 408 TVHLVPCPSCGRKFNERALLVHQRVCEKVFRSTRPAYNSRQHRLRGFESGTGPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDTPEDGFSMPCEPSTQVPAATPSSSARPTSEYRATRHSTRK----DKDDQRSTGSSSRPAYPEPVHRKALSPMT-----------TSPSEPNSQ-GKKWLEQSQNFRTMLRANRLIADAERKGRPVSPTLLAVLASSASAASGHSNQHLIPCPHCGRRFNEQAADRHIPKCQDIKAKPSMLRKGEGISLGAASRRSKGEGGRGRIINGGL-APRGSPRGKGLRAERK 700
BLAST of NO12G03490 vs. NCBI_GenBank
Match: GBG31944.1 (Zinc finger C2HC domain-containing protein CBG14627 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 89.4 bits (220), Expect = 5.700e-14 Identity = 75/287 (26.13%), Postives = 105/287 (36.59%), Query Frame = 0 Query: 482 TGEEVER--PTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHR 767 TGEE+ P+ +YPC CGR F + L HS+VC+KVF R FD+ Q R +G + P + VK G + + S +T + G KW +QSQ R +K N+ +A+A+ +G+ + SS + LVPCPHC R +NE+AA RHIP+CKD +AKP+RL +G G AR R Sbjct: 441 TGEEIPEYAPSEPLYPCPSCGRKFRKPTLEKHSKVCKKVFKQKREAFDTTQARLKG-------------------------------------------------------------------------------------------VMQNPDDARVVKSALSKGASRAGAARASSGATKKS-----GGNKWKKQSQALREAMKYNKILAKAKADGKDI--------SSVPPPPTSQDDSDLVPCPHCGRTFNEKAAERHIPRCKDTKAKPTRLVRGGGKNAAARPR 623
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_009038970.1 (hypothetical protein AURANDRAFT_65724 [Aureococcus anophagefferens] >EGB06395.1 hypothetical protein AURANDRAFT_65724 [Aureococcus anophagefferens]) HSP 1 Score: 81.3 bits (199), Expect = 1.500e-11 Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 0 Query: 660 AAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGAR 765 AA P +D KKW QS R ++A R VA AEK G+P P + + S V CPHC R +NE+AA RHIPKC+ I+AKP L +G G +G+R Sbjct: 552 AAAPGGKD-KKWKAQSNQLREAMQAMRGVAAAEKAGKPPPPMV-----------ASTPDPSFVQCPHCSRTFNEKAAERHIPKCQSIKAKPKSLARGGGRTIGSR 644
BLAST of NO12G03490 vs. NCBI_GenBank
Match: CBN78272.1 (Zinc finger, C2H2 type family protein [Ectocarpus siliculosus]) HSP 1 Score: 79.0 bits (193), Expect = 7.600e-11 Identity = 94/286 (32.87%), Postives = 116/286 (40.56%), Query Frame = 0 Query: 496 CELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHRVVKESWGGRVVGGRF 782 C CGR F AL HSR C KVF + R FD+ + R +GTE EK+ K++ XXXXXXXXXXXXXXXXXXXX D T + AA KW QQS+ FR L+ R VA A+K G+ +L+ SL+PCPHC R+++E A RH+ CK+IRAKPS L KG G LLG R G+ G R+ Sbjct: 872 CRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKEK--------------------------------------------------XXXXXXXXXXXXXXXXXXXXGFDDTPVGGAAA------------------------------------RGARSSKWRQQSKQFRDALRQARVVADAQKSGK--------SLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIRAKPSVLKKGSGSLLGQAARKTASGASGKGRGQRW 1063
BLAST of NO12G03490 vs. NCBI_GenBank
Match: XP_003063413.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH52549.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 66.6 bits (161), Expect = 3.900e-7 Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0 Query: 721 LVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGARHR 767 L CPHCLRK+NE AAARHIP+C++I+AKP+RL KG G GA HR Sbjct: 712 LEQCPHCLRKFNETAAARHIPQCRNIQAKPTRLQKGGGR--GAHHR 755
BLAST of NO12G03490 vs. NCBI_GenBank
Match: GAX79868.1 (hypothetical protein CEUSTIGMA_g7308.t1 [Chlamydomonas eustigma]) HSP 1 Score: 66.2 bits (160), Expect = 5.100e-7 Identity = 72/283 (25.44%), Postives = 93/283 (32.86%), Query Frame = 0 Query: 489 PTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVK-------QQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATRRPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQGMLLGAR 765 P+ + C+ CGRSFNQ+A H++VC KVF R F+ R GTEA K+V +Q RP R G TD A + AA KW QQS RA ++ANR + +A+ +G + A+ + VPCP+C RK+ A RHIPKCKD AKPS G G AR Sbjct: 464 PSGLLIECQSCGRSFNQQAYPKHAKVCAKVFCQKRKVFNMTAARVAGTEAAKFVMGAGGNKGRQPARPGSGARGG---------------------------------------------------------------TDA----------------------------------RVAQSAAAASKKAKWKQQSDQLRAAMQANRMMKEAQAKGMDI--------KDIPFQAANPEDDDRVPCPYCGRKFAPLTADRHIPKCKDTIAKPSFQKAGAGKGAHAR 641
BLAST of NO12G03490 vs. NCBI_GenBank
Match: PNW83851.1 (hypothetical protein CHLRE_04g217952v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 65.5 bits (158), Expect = 8.700e-7 Identity = 66/283 (23.32%), Postives = 91/283 (32.16%), Query Frame = 0 Query: 479 TFSTGEEVERPTTHVYPCELCGRSFNQRALSVHSRVCQKVFISTRPRFDSRQRRTQGTEAEKYVKQQLMRPLVNRRLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRTDIATLAATR---RPLPQKQVKRQYITGTTFSSLPSVSLDSTAAAIPAAEDGKKWLQQSQGFRAMLKANRRVAQAEKEGRPVSPTLLAALSSSAAAASGMQSQSLVPCPHCLRKYNEQAAARHIPKCKDIRAKPSRLHKGQG 759 T G + PT + C CGR FN++A S H+++C+KVF R + +R +G+EA K+ + P + TR RPLP S +P KW QS+ R + AN+R+A A G + + + VPCPHC RK+ E A RHIPKC+DI AKP L G Sbjct: 375 TIPPGADDPGPTGPMVECPSCGRRFNEQAYSKHAKICEKVFAQKRKPVNMAAKRLEGSEAAKFFDMRKGVPKSEAK-----------------------------------------------------GAAGPPGKAAPGRGAGAAGGTRLDDRPLPG-------------SKMP------------------KWKAQSEQLRQAMAANKRIADAAARGVDIKDVKFTPTPA--------EQDDRVPCPHCGRKFAELTAERHIPKCRDILAKPKFLGAKSG 565 The following BLAST results are available for this feature:
BLAST of NO12G03490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03490 ID=NO12G03490|Name=NO12G03490|organism=Nannochloropsis oceanica|type=gene|length=3287bpback to top protein sequence of NO12G03490.1 >NO12G03490.1-protein ID=NO12G03490.1-protein|Name=NO12G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bpback to top Synonyms
Publications
|