NO12G03460, NO12G03460 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G03460 vs. NCBI_GenBank
Match: EWM25700.1 (hypothetical protein Naga_100222g8 [Nannochloropsis gaditana]) HSP 1 Score: 154.5 bits (389), Expect = 2.100e-34 Identity = 77/117 (65.81%), Postives = 86/117 (73.50%), Query Frame = 0 Query: 1 MFSRFGTSLLRQSTRRVP--AAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGXXXXXXXXXXAHYKETEFDAPSELEEAEDEE 116 M R T+ RQ RR P A RPTTGRRFLGSGG G HFHVSE HQK ATVMTTVCWVW+LWRCYEDGAVVLGL+HPWDGHG AH+K+ +FD PSELEEAE+++ Sbjct: 29 MLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGG-GHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHG--DHGHHGGGAHFKDVDFDGPSELEEAEEDD 142
BLAST of NO12G03460 vs. NCBI_GenBank
Match: GAX92184.1 (Hypothetical protein PINS_000115 [Pythium insidiosum]) HSP 1 Score: 82.8 bits (203), Expect = 7.800e-13 Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 0 Query: 13 STRRVPAAVRPTTGRRFLGSGGHG--------XXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHG 85 S RR A +GRRF+G GGH HFHVS H+ +A T+ W+WI WR +DG VVLGL+HPWD HG Sbjct: 5 SMRRAVARSTAVSGRRFMGGGGHSHGHAKDYPFGMHFHVSPVHKNLALAYGTMLWLWIFWRAKQDGKVVLGLEHPWDHHG 84
BLAST of NO12G03460 vs. NCBI_GenBank
Match: XP_024576257.1 (hypothetical protein PHALS_10116 [Plasmopara halstedii] >CEG39888.1 hypothetical protein PHALS_10116 [Plasmopara halstedii]) HSP 1 Score: 66.2 bits (160), Expect = 7.600e-8 Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = 0 Query: 24 TTGRRFLGSG-GHG----XXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWDGHGXXXXXXXXXXAHYKETEFDAPSE 108 ++GRR + S GH HFHVS H+ +A T+ W+W+ WR DG VLGL+HPWD HG H+ ET + S+ Sbjct: 14 SSGRRAVSSSHGHSHNYPHGMHFHVSAVHKNLALAYGTMLWLWVFWRAKHDGLAVLGLEHPWDHHG-----------HHDETHAEGASK 91
BLAST of NO12G03460 vs. NCBI_GenBank
Match: OQS04379.1 (hypothetical protein THRCLA_20903 [Thraustotheca clavata]) HSP 1 Score: 65.9 bits (159), Expect = 9.900e-8 Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0 Query: 1 MFSRFGTSLLRQSTRRVPAAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPW 81 M SR LLR S R A+ G G + HFHVS H+ +AT T+ W+W+ +R EDGAVVLG +HPW Sbjct: 3 MLSRVSKPLLRLSHVRSMASHH--------GHGTYPHGMHFHVSSVHKNLATAFGTLTWLWVFYRAKEDGAVVLGFEHPW 74
BLAST of NO12G03460 vs. NCBI_GenBank
Match: XP_009526209.1 (hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae] >EGZ17151.1 hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae]) HSP 1 Score: 64.7 bits (156), Expect = 2.200e-7 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0 Query: 15 RRVPAAVRPTTGRRFLGSG-------GHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWD 82 RR+ AA +GRR + S HG HFHVS H+ +A T+ W+W+ WR +DG VVLGL+HPWD Sbjct: 9 RRMAAA----SGRRAMSSAHXXXXXXPHG--MHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGRVVLGLEHPWD 76
BLAST of NO12G03460 vs. NCBI_GenBank
Match: POM66343.1 (Hypothetical protein PHPALM_17807 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 63.2 bits (152), Expect = 6.400e-7 Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 0 Query: 15 RRVPAAVRPTTGRRFLGSGGHGXXXHFHVSETHQKVATVMTTVCWVWILWRCYEDGAVVLGLKHPWD-GHG 85 RR+ A+ R XX HFHVS H+ +A T+ W+W+ WR +DG VLG +HPWD GHG Sbjct: 9 RRLAASGRRAMSSXXXXXXXXXXXMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWDHGHG 79 The following BLAST results are available for this feature:
BLAST of NO12G03460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03460 ID=NO12G03460|Name=NO12G03460|organism=Nannochloropsis oceanica|type=gene|length=771bpback to top protein sequence of NO12G03460.1 >NO12G03460.1-protein ID=NO12G03460.1-protein|Name=NO12G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bpback to top Synonyms
Publications
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