NO12G03390, NO12G03390 (gene) Nannochloropsis oceanica

Overview
NameNO12G03390
Unique NameNO12G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1514
Alignment locationchr12:930190..931703 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:930190..931703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03390 vs. NCBI_GenBank
Match: XP_005853735.1 (hypothetical protein NGA_0478601, partial [Nannochloropsis gaditana CCMP526] >EKU22625.1 hypothetical protein NGA_0478601, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0 
Query:    1 MEDVWDFDFLPPGLGWTDLADVRQKLEE-YQQVKLDPWFQTAHPELYRDWRLQSGR 56
            M++ WDFDFLPPGLGWTDLAD R  ++E  Q + +DPWF T H ELY+ W  +S R
Sbjct:    1 MDESWDFDFLPPGLGWTDLADPRVLMDEGVQSIPIDPWFHTTHAELYQKWSGRSSR 56
The following BLAST results are available for this feature:
BLAST of NO12G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853735.12.600e-1158.93hypothetical protein NGA_0478601, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010298NSK010298Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03390.1NO12G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03390.1NO12G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03390 ID=NO12G03390|Name=NO12G03390|organism=Nannochloropsis oceanica|type=gene|length=1514bp
ATGGAGGACGTCTGGGACTTTGACTTTCTGCCCCCAGGCTTGGGATGGAC
GGATCTTGCCGATGTCCGCCAAAAGCTAGAGGAGTACCAACAGgtcagtg
agatgcttccccgtgattcagcctgccatgccgcacccactccacacctg
gaaggacgcccccatcataattagctccatccgctactcatacctccctc
ccctccgcaatcaaacagGTTAAACTGGACCCCTGGTTTCAGACGGCCCA
CCCAGAGCTCTATCGAGATTGGCGCCTGCAGTCTGGCCGTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCTCCTCCGCCTCCTCCACCTCCTCCTCTTTTTCATCATT
GAACCGGCGCATGAGCGGCACAGCCCGTCGCTATTCAAATCAAGGCTTAT
TGGTAGGGGTGGGGGCGGCGGTCGCAGCAGCCAACGCAGCAGCAGCAGCA
GCTTTGGCGGTCCGGCGGGGGAGCAGCATTCGAGGCAGCAATACCAGCAC
GACCAGCAATAGCGGAGCAGAAAGAGGAGGAGGAGCGAACAAAGAAAATG
GAGAAGGGTCACAGCAGCAAGTGGTCATGGGTCCTCCCCCACCCAGATTA
CTCAAGCCGGCTGCAGGAGGAAATGGTGGAGGGGCGGCAAAAGCAGCAGC
AGCAGCAGCAGCAGGAGGGGGGGGGCAGAAGCGGCCGAGGGCACACATGT
CGTCATTTGTAAGGCGAAGGGAGGTGAGGATGGAGGTGGATGAGGAGGAA
GAAGAGGAGGGAGAAGAAGGGTTGATGGAGGAGTATTGTGACGGAGAGGA
GGAGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAGGGGATCGGTGGCGTGA
GAGGTAGAGGAGGAGGAGCAGAAAGAGGGTTGCAAGGACAAGCATCGGCA
GGCCAGTTGATGCGACAGAAGTTGGAAGAGTTTAAGATGGCCAAAATGGG
AAAGGGAGAAGGGGGGAGGAGAGGAGGAGGGATGGATGGAGGAAGGAGTG
ATGGTGCTGGTCCAGTCGGTCCTCCGGCGCGAAAGCCAGCGGTCCCACAG
CAGGCACATCGGATGACGACAGGAACAGCCAGCAGTAGCAACAGCAGCAC
TTGTAGCAGCGGCCGTGCTTATGTGAAGGTGGTGAATGGCAGACCAAGGG
AAGCCGCAGCAGGCAGGGGAGGAGCAGGAGGAAAACGGAAAGCAGCCGCC
GGGGGTGTCAAACGCAGCGAAAGCATAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGAGGATGAGGAGATGAAAGCATTGGTTGCCCTGCACAACAAGA
AGTTCCGTGCAGCCCAGGCAAACCCAGCTTATGTGCCTGCATTGAGCGTC
AAAGAGACGAAGAAGTGGGAGGCAGTTACGGGGAAAGTTTACCGAAGCCT
GTCGATGCGGGAGAGAGAGATTGCCAATGCCGAGATGAAGGAGTGGAAGG
TGAAGGAGGGATGA
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protein sequence of NO12G03390.1

>NO12G03390.1-protein ID=NO12G03390.1-protein|Name=NO12G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MEDVWDFDFLPPGLGWTDLADVRQKLEEYQQVKLDPWFQTAHPELYRDWR
LQSGRSSSSSSSSSSSSSAAAAAAAAAAASSASSTSSSFSSLNRRMSGTA
RRYSNQGLLVGVGAAVAAANAAAAAALAVRRGSSIRGSNTSTTSNSGAER
GGGANKENGEGSQQQVVMGPPPPRLLKPAAGGNGGGAAKAAAAAAAGGGG
QKRPRAHMSSFVRRREVRMEVDEEEEEEGEEGLMEEYCDGEEEQQQQQQQ
QRQGIGGVRGRGGGAERGLQGQASAGQLMRQKLEEFKMAKMGKGEGGRRG
GGMDGGRSDGAGPVGPPARKPAVPQQAHRMTTGTASSSNSSTCSSGRAYV
KVVNGRPREAAAGRGGAGGKRKAAAGGVKRSESIAAAAAAAAAAEDEEMK
ALVALHNKKFRAAQANPAYVPALSVKETKKWEAVTGKVYRSLSMREREIA
NAEMKEWKVKEG*
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Synonyms
Publications