NO12G03360, NO12G03360 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03360 vs. NCBI_GenBank
Match: EWM25707.1 (hypothetical protein Naga_100333g4 [Nannochloropsis gaditana]) HSP 1 Score: 1454.1 bits (3763), Expect = 0.000e+0 Identity = 727/954 (76.21%), Postives = 806/954 (84.49%), Query Frame = 0 Query: 214 PPPLVEFELTKGVAGSRKTQHAVTRAYAAGSSGEMRNVLFLVKVGSNAQEIRSRLEAQMGLSFKRHKLTNHFVARDF-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXSYWVASFDAFVDCQLRAHASMAEKLKTRGANFEWKRAELLRLITEGKHGGFYLKDGAMADFVLVDEAQDLREEDMQIVSRLVESEQSRGGSLRKVLVVGDVDQTVFSDVLTGRSVGHPMDLLSTWMPSVKVNTRRLDINYRCPHAHVAFNNLALPRNASRGDGPVKPSPDTTDHLTRRLNKPYLFTYVQSSSSVQNYDAYRTACRIAEMVLVLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALTEAGYAPEDGSGCVHLFRTKVTDRKSINWEEAGARLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTKKELVDRSLFNVGTTRSREVLLIGFDAKAPSRYLSHVQERLHEGAQLEWDLNTVEPHGPYLGIHGTRGNDTKTKADGVVEWKEGRNKTVDVPFKYYWSVTDSTDEISTVDDLLLG-QGLGEDGA---EGSYGWKGLDRFGKRVVPPLWFKTDETGRLITGVMGEALLARELHVRGLLSKRADAALLWPVVEKLGRGKGRKGGGEG-PVVFTEDPKVLNLAVDYRLNELWAYEEVEEWRHALELLLEDHGAKSGKIDKSHAFFAELLLGAPKCVLNAGYRGPIETFGPLLDYSIPSAELPAEAVWNCAILYQDALCHGLRQPSLAKRLLKVGDPRTPQGLAELLGGLSDNVISYIDFKKERNSTSFSQGKGVSLLQKEMEEEVLVKRGFCRERDAHVYTDGWTYGLMGRIDFYDENRKRIVEVKVSDIDGILPSHEVQSLLYALLYGNGWKPTRAFEIVNLLKGVRYKRVVRKEVKLWECLKRGLEKLEFDEEMVETLGRMYGPQFWEKEREEAAAALLAGKVEDT 1158 P P + FELTKGVAGSRKTQHAV+ A+ AGS+G M+N+LFLVKVGSNAQEIRSRLE QMGL FKRHKLTNHFVARD SYWVASFDAFVDCQLR H SM EKLKTRGANFEWKR LLRLI G HGGF LKDGA+ADFV+VDEAQDLREEDM+IVSRLVESE +R G+LR+VLVVGDV+QTVFSDVLTGR GHPMD L WMPSV V+TRRLDINYRCPHAHV+FNNL++PRNA+RG+G V+PSP+ + +KPYLFTYVQSSSSVQNYDAYRTACRIAE+VL LLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERAL EAGYAP DGSGCVHLFRTKVTDRKSINWEEAG RLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHT+KELVDRSLFNVGTTRS+EVLLIGFDAKAPSRYLSHV ERLHEGAQLEW+ +T+E GPY I+ TR ND+K+ A+GVVEWKEGRN+TVDVPFKYYWSVTDSTDEI TVDD+LLG + GEDGA EG Y WKG DRFG R+ PP WFK DETGRLITGVMGEALLARELHV+G LSKRADA LLWPVVEKLG GR GG +G PVVFTE PKVLNLAVDY LNELWAY+E E+WR ALE+LLEDHG ++G S AFF ELL G P+CVL+A YRGPI+TF PLLDY IPSAELP EAVWNCA+LYQDAL +GLRQPSL KRLL+V D RTP+ L++LL GLS+NVI+Y+DFK+ RNST+F+QG GVSLLQKE+ E L KRGFCR+RDAHV+ +GWTYGL GRIDFYDENRKRIVEVKVSD DG+LPSHEVQ+LLYALLYGNGWKPTRAFEIVNLLKG+RYKRV+R++VKLW CL+R +KL+FD+EM+ETLGR YGPQ+WEK EE + G +E++ Sbjct: 51 PRPPIHFELTKGVAGSRKTQHAVSAAFQAGSTGAMKNILFLVKVGSNAQEIRSRLETQMGLEFKRHKLTNHFVARDNRSPMPDAEVVDGGERERGRGRGVTRRISAGATASYWVASFDAFVDCQLRTHPSMQEKLKTRGANFEWKRDALLRLIRAGAHGGFCLKDGALADFVVVDEAQDLREEDMEIVSRLVESEHARDGALRRVLVVGDVEQTVFSDVLTGRGQGHPMDCLHRWMPSVPVHTRRLDINYRCPHAHVSFNNLSVPRNATRGEGLVRPSPEMAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLG---GRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAG---ASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLEVEDCRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEES 998
BLAST of NO12G03360 vs. NCBI_GenBank
Match: XP_005853736.1 (rep helicase [Nannochloropsis gaditana CCMP526] >EKU22626.1 rep helicase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1074.3 bits (2777), Expect = 3.300e-310 Identity = 529/665 (79.55%), Postives = 585/665 (87.97%), Query Frame = 0 Query: 498 NKPYLFTYVQSSSSVQNYDAYRTACRIAEMVLVLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALTEAGYAPEDGSGCVHLFRTKVTDRKSINWEEAGARLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTKKELVDRSLFNVGTTRSREVLLIGFDAKAPSRYLSHVQERLHEGAQLEWDLNTVEPHGPYLGIHGTRGNDTKTKADGVVEWKEGRNKTVDVPFKYYWSVTDSTDEISTVDDLLLG-QGLGEDGA---EGSYGWKGLDRFGKRVVPPLWFKTDETGRLITGVMGEALLARELHVRGLLSKRADAALLWPVVEKLGRGKGRKGGGEG-PVVFTEDPKVLNLAVDYRLNELWAYEEVEEWRHALELLLEDHGAKSGKIDKSHAFFAELLLGAPKCVLNAGYRGPIETFGPLLDYSIPSAELPAEAVWNCAILYQDALCHGLRQPSLAKRLLKVGDPRTPQGLAELLGGLSDNVISYIDFKKERNSTSFSQGKGVSLLQKEMEEEVLVKRGFCRERDAHVYTDGWTYGLMGRIDFYDENRKRIVEVKVSDIDGILPSHEVQSLLYALLYGNGWKPTRAFEIVNLLKGVRYKRVVRKEVKLWECLKRGLEKLEFDEEMVETLGRMYGPQFWEKEREEAAAALLAGKVEDT 1158 +KPYLFTYVQSSSSVQNYDAYRTACRIAE+VL LLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERAL EAGYAP DGSGCVHLFRTKVTDRKSINWEEAG RLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHT+KELVDRSLFNVGTTRS+EVLLIGFDAKAPSRYLSHV ERLHEGAQLEW+ +T+E GPY I+ TR ND+K+ A+GVVEWKEGRN+TVDVPFKYYWSVTDSTDEI TVDD+LLG + GEDGA EG Y WKG DRFG R+ PP WFK DETGRLITGVMGEALLARELHV+G LSKRADA LLWPVVEKLG GR GG +G PVVFTE PKVLNLAVDY LNELWAY+E E+WR ALE+LLEDHG ++G S AFF ELL G P+CVL+A YRGPI+TF PLLDY IPSAELP EAVWNCA+LYQDAL +GLRQPSL KRLLKV D RTP+ L++LL GLS+NVI+Y+DFK+ RNST+F+QG GVSLLQKE+ E L KRGFCR+RDAHV+ +GWTYGL GRIDFYDENRKRIVEVKVSD DG+LPSHEVQ+LLYALLYGNGWKPTRAFEIVNLLKG+RYKRV+R++VKLW CL+R +KL+FD+EM+ETLGR YGPQ+WEK EE + G +E++ Sbjct: 10 DKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLG---GRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAG---ASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLKVEDSRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEES 668 The following BLAST results are available for this feature:
BLAST of NO12G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03360 ID=NO12G03360|Name=NO12G03360|organism=Nannochloropsis oceanica|type=gene|length=4584bpback to top protein sequence of NO12G03360.1 >NO12G03360.1-protein ID=NO12G03360.1-protein|Name=NO12G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1192bpback to top protein sequence of NO12G03360.2 >NO12G03360.2-protein ID=NO12G03360.2-protein|Name=NO12G03360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1034bpback to top Synonyms
Publications
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