NO12G03340, NO12G03340 (gene) Nannochloropsis oceanica

Overview
NameNO12G03340
Unique NameNO12G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2292
Alignment locationchr12:916884..919175 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:916884..919175 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010292NSK010292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03340.1NO12G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592775gene_5509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03340.1NO12G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03340 ID=NO12G03340|Name=NO12G03340|organism=Nannochloropsis oceanica|type=gene|length=2292bp
GGGGGGGGGAGGCAAGCTCTACGAAAGCCCTTTCCCCTAATTTTCACTCC
CACCAATCGTGTACACAGGACCATTTGGCGCAGGTACATTTACCACTGGT
CTTGATATACGTGGCCGCCAGGTAAGgtaagtggctcgtacggggggctt
gtggggcttcgggccacggcaacggccgctaatttttcatttttgggcga
tcagcgtagggagcacttcacatggccaggtcctcagtcgtcacaccact
gcatgcaccttcacgcgcacagACAGCATGAGGTCGCCCTCGAAGTCACC
ACGACACGTGCCCCAACCACCAGAACTCGCGGCGTCCACGAGCACACAAG
GCCTTGTCTTCTCCCACCTCGCTTTAATTTTGACGCGGTTGGCCGCTTAC
CTGCCAGCGCACGAGGCTCCGCTATTGCGGGAGGTGTCCAATGCCTTTGG
CATGCTCGAAGGAGAGCACCGACGGCTGGAAGAGGAGGTGGAACGGCTGC
GGAGATTGGAGCAGGAGTGGCAGCAAAGTTCGCAAGCGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAAGAAATGCATGCCATGTCCCACCTCAGCACCACCGAAG
ACCTCAAGAGCGCCAAAAGAGGCAGCTCCAGCAACAACAAGCGCATCCAG
GCTTATCGCAAGGCAGTCCAGGAGCGAAACGACAAGATTGCTCAGCTGAG
GCAGGAGAAGGAGGAGGCCTTGAGCCAAGTTAATGCGGTTCACCGTGAAC
GACTCCAAGAGAGTGAATCTCGTGCTCATTCCTTAGAAGCCCGCGCAGAG
CGTGAGTCTAAGGAAATCCAACAGCTTACTCATTTGGCCATGTCGATGCA
GAAGACTTTGGAGGCGCAGCAAGCGCATGTGGCCTTGCTGTCGTCGGAAA
ATTTAGAGTTAAAATTGCGATTGGAGGCAGCAGCAGCGACGGCTTCAATG
GTGGGGACAGGGGTAAGAAAGGAGGGCGTTTCAACAGAGTTATCACTTTC
TCCCATACGAAGAAGGAACCAAGAGAGGAAGAGGCAGGAGGAGAAGACTG
AGAGGTCGGCACGGGCCCGAGGAGGGGCAGCAGCAGCAGTAGGAGCAAGA
CATGCAGGCCGCATTAGCCTTGGTGGTGGTGACAGCCGGAGACAAGCATT
GCTCTGGGATGACGACGATTCGGAGGGAGAGGCTGAGGAGGAGGAAGAGG
AGGTGAAAGAGAGAGCAGGGAGTCAACACTTCAAGTCTGCAGTGAATCGA
CATCCGAAGGAGGAGATGATGGGAAGTGGGGGAACTGGGGTGGGCGAGTA
CAGCAGTGGGGAGGACGAACGCGTGTTCGATTACCATGACGTGACTGTTT
TGGATGAGGGGGGGGAGGAGGAGGAGATGGAGGAGGGATTGCTGGTGGAG
GAATGTGTGGTAAGGGAAGAGGAACCACCGGCAGCGCCAAGGAGGGGGAG
GTCGGGAAGGAAGGCGACTTCCTCTTCGGCGTCCTATTTTAAGTTGTCGA
GTAATACAGCCACAGCCAGGAAGAACAGGACGGAAGGTGCTGCAGCTACT
GCTGCAGCGGCTCCTGCCTCCGCTTGTCCTATCCCTTCGGCCGCTGCTTT
GCCTCCTGCTGCCAGTCACTTCCGTCCTCCATCTCTCTACCTGTCCACCC
TCTCCTCCTCGCTTCCGAACCAGGCTTTGTTTACCAGTACCAAGACCACG
ACTCCTCACGCCTTGCCCATTGCGACTACGGCTTCAAAAAGGGGGAAGGC
AAGCATAGTTAAGCACAACACTCTCACCACCGACGAGAGCAGTGGCAACG
GCAGTGGCAGGCAGTATCGAGAAAGTCACGTTGGTGGTGAGGTGGTGGCG
GTGGAGGATGAGGAAGGACGGAAAACTGGTCTCCAGATTCCATCAAAAAA
GGTGTGGAACCGCCTCAGTCGCAGTATCTGTGCTCGAAGGCCATACAATG
ACAGTCAAGATGATGTGTTTGCGGCGGGGGGAAGGAGCAGCAGTATGGGG
GGGAGGAGCAGCAAGAGCAGTAGCACTGGGAGCAGGCTGAGTCTTGACGA
GCTGCTCACAAGCTTAGGCTTAAAAGAGGAGGAAAGTGGATAAGGACTAG
GACGATTGTGATGAGGAGGATGACTGGTTTGAAGAAAACGAGTCGTGCAA
GAGGAGGGATGTAGATTAGATCAAGGAAGTTGTGGTATCGGAGACGCACT
GCAAAAACAATATTGAATAAAACAGAGTAACCAGATGGACTC
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protein sequence of NO12G03340.1

>NO12G03340.1-protein ID=NO12G03340.1-protein|Name=NO12G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MRSPSKSPRHVPQPPELAASTSTQGLVFSHLALILTRLAAYLPAHEAPLL
REVSNAFGMLEGEHRRLEEEVERLRRLEQEWQQSSQAQQQQQQQQQQQQQ
QQQQQQQQQQQQEMHAMSHLSTTEDLKSAKRGSSSNNKRIQAYRKAVQER
NDKIAQLRQEKEEALSQVNAVHRERLQESESRAHSLEARAERESKEIQQL
THLAMSMQKTLEAQQAHVALLSSENLELKLRLEAAAATASMVGTGVRKEG
VSTELSLSPIRRRNQERKRQEEKTERSARARGGAAAAVGARHAGRISLGG
GDSRRQALLWDDDDSEGEAEEEEEEVKERAGSQHFKSAVNRHPKEEMMGS
GGTGVGEYSSGEDERVFDYHDVTVLDEGGEEEEMEEGLLVEECVVREEEP
PAAPRRGRSGRKATSSSASYFKLSSNTATARKNRTEGAAATAAAAPASAC
PIPSAAALPPAASHFRPPSLYLSTLSSSLPNQALFTSTKTTTPHALPIAT
TASKRGKASIVKHNTLTTDESSGNGSGRQYRESHVGGEVVAVEDEEGRKT
GLQIPSKKVWNRLSRSICARRPYNDSQDDVFAAGGRSSSMGGRSSKSSST
GSRLSLDELLTSLGLKEEESG*
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Synonyms
Publications