NO12G03300, NO12G03300 (gene) Nannochloropsis oceanica

Overview
NameNO12G03300
Unique NameNO12G03300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr12:908844..909446 +

Link to JBrowse

Properties
Property NameValue
DescriptionDrug/metabolite transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:908844..909446 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: EWM25718.1 (Drug/metabolite transporter [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 9.500e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0 
Query:    2 VLQRYFRSSKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDP 85
            ++ RYF  SKRSASYALGLFFIFLVA+IWAGASVLIQHIYTDMHFESPFLLTFICTSLFS+YLPWT LC +LGW +NPPWRDP
Sbjct:    1 MVHRYFTGSKRSASYALGLFFIFLVAIIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSVYLPWTYLCVRLGWTKNPPWRDP 83
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: XP_002179213.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49036.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.9 bits (172), Expect = 5.200e-9
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 0 
Query:   13 SASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSIYLPWTLL 70
            S SYA GL FI LVA+IWA +SVL+Q++YT+  FESPFLLT+I  SLF+++LP  LL
Sbjct:    3 SRSYAQGLVFIVLVALIWAASSVLVQYLYTEQSFESPFLLTYIGVSLFTLWLPTRLL 59
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: GAX12674.1 (solute carrier family 35, member F5 [Fistulifera solaris])

HSP 1 Score: 67.8 bits (164), Expect = 4.400e-8
Identity = 33/54 (61.11%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:   13 SASYALGLFFIFLVAVIWAGASVLIQHIYT-DMHFESPFLLTFICTSLFSIYLP 66
            SA+Y+LGLFFI LVA+IW  +S+L+Q++Y+ D+ F+SPFLLT+I  SLFS++LP
Sbjct:   10 SAAYSLGLFFIVLVALIWTASSILVQYLYSEDVSFDSPFLLTYIGVSLFSLWLP 63
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: GAX27753.1 (solute carrier family 35, member F5 [Fistulifera solaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:   13 SASYALGLFFIFLVAVIWAGASVLIQHIYT-DMHFESPFLLTFICTSLFSIYLP 66
            S +Y+LGLFFI LVA+IW  +S+L+Q++Y+ D+ F+SPFLLT+I  SLFS++LP
Sbjct:    8 SGAYSLGLFFIVLVALIWTASSILVQYLYSEDVSFDSPFLLTYIGVSLFSLWLP 61
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: CBN74779.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.5 bits (158), Expect = 2.200e-7
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 0 
Query:   10 SKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDPVPG 88
            SKR   +ALG+FFI LV+V+WA  S+++Q I  D+ +  PF+ T+IC+++ +  +P  L    +G   NPP+RD   G
Sbjct:   31 SKR--QWALGIFFIILVSVLWAAGSIIVQFIADDIGYNQPFVFTYICSAVMTFLVPSYLGLTFVGLAHNPPFRDRAAG 106
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BLAST of NO12G03300 vs. NCBI_GenBank
Match: OEU19806.1 (hypothetical protein FRACYDRAFT_181871 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.5 bits (153), Expect = 8.400e-7
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:   14 ASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPFLLTFICTSLFSIYLP 66
            +SYALGL FI LVA+IW+ AS+L+Q++Y +  F +PFLLT+I TSLF I LP
Sbjct:    7 SSYALGLVFIVLVAIIWSIASILVQYLYHNQDFHAPFLLTYIGTSLFVIQLP 58
The following BLAST results are available for this feature:
BLAST of NO12G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Position :
0
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50100150200250300350400450500550600SequenceEWM25718.1XP_002179213.1GAX12674.1GAX27753.1CBN74779.1OEU19806.1
Match NameE-valueIdentityDescription
EWM25718.19.500e-3585.54Drug/metabolite transporter [Nannochloropsis gadit... [more]
XP_002179213.15.200e-963.16predicted protein, partial [Phaeodactylum tricornu... [more]
GAX12674.14.400e-861.11solute carrier family 35, member F5 [Fistulifera s... [more]
GAX27753.11.300e-759.26solute carrier family 35, member F5 [Fistulifera s... [more]
CBN74779.12.200e-741.03conserved unknown protein [Ectocarpus siliculosus][more]
OEU19806.18.400e-761.54hypothetical protein FRACYDRAFT_181871 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010282NSK010282Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03300.1NO12G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|68780gene_5504Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100154g12gene4800Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03300.1NO12G03300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03300 ID=NO12G03300|Name=NO12G03300|organism=Nannochloropsis oceanica|type=gene|length=603bp
ATGGTTCTTCAGCGTTACTTCCGGAGTTCCAAACGCTCCGCCTCCTACGC
CCTAGGCCTGTTCTTTATCTTCCTTGTCGCTGTCATTTGGGCTGGGGCTT
CCGTGCTCATTCAACACATATACACCGACATGCATTTCGAGTCGCCTTTC
CTCCTAACGTTCATCTGCACCAGTCTCTTTAGCATCTACCTGCCTTGGAC
ATTGCTATGCGCCAAGCTGGGGTGGGGTGAAAACCCACCGTGGCGCGATC
CTGTCCCTGGAGAGGGCGTAGGAGGAGCGCTGTATACAACGGTGCGAAGT
GGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAACA
CCGGCAGCAGCTGCATCAATTATGGCAACAGCCGCATGAGAATAGATGAA
CTGCCCTTGCGGGCAGGGATGGGCAGCGATTCATCTCTATTTTCAGTAGA
GACCACAGCAGCAGCAGTGCAGGAGCACGACGAGCTCACGGCCACGTCCT
TCCCCTCCTCCTCCTGCTCCCCCCCCCACCCCAACAACGATGGAGCCACC
TAA
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protein sequence of NO12G03300.1

>NO12G03300.1-protein ID=NO12G03300.1-protein|Name=NO12G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MVLQRYFRSSKRSASYALGLFFIFLVAVIWAGASVLIQHIYTDMHFESPF
LLTFICTSLFSIYLPWTLLCAKLGWGENPPWRDPVPGEGVGGALYTTVRS
GRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNTGSSCINYGNSRMRIDE
LPLRAGMGSDSSLFSVETTAAAVQEHDELTATSFPSSSCSPPHPNNDGAT
*
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Synonyms
Publications