NO12G03270, NO12G03270 (gene) Nannochloropsis oceanica

Overview
NameNO12G03270
Unique NameNO12G03270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr12:904476..905672 +

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Properties
Property NameValue
DescriptionNudix hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:904476..905672 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of NO12G03270 vs. NCBI_GenBank
Match: EWM25723.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 2.700e-75
Identity = 149/207 (71.98%), Postives = 166/207 (80.19%), Query Frame = 0
Query:   15 RSTSSLLLRRSR------GIHSWRR-WLGTSSSPTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDP-TGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWREQEEGGGGAG 214
            RSTS LL  R R          +RR +   +SS TGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKI+ GAV+T R P TG  LFLLCRRAIPPR+G  NLCAGYMEKGESL++AA REAREEAGA I++G ILG++DISHIGQVHIYFKATL + DIEPGYES DARLVRW++I W +LAFPTVSWALMAW +Q   GG  G
Sbjct:   12 RSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWG 218          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: OJU31924.1 (NUDIX hydrolase [Alphaproteobacteria bacterium 65-37])

HSP 1 Score: 164.1 bits (414), Expect = 5.000e-37
Identity = 85/161 (52.80%), Postives = 104/161 (64.60%), Query Frame = 0
Query:   50 FELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDP---TGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWREQEE 208
            FE R    D+  RL C  C  I Y NPKI+ GAV T+RDP    GK   LL +RAI PRKG   L AGYME GE+  QAAQREAREEA A+IE+  +L +Y ++ IGQV I ++A L S D+  G ES+D  LV W DI W++LAFPTV WAL  + E  +
Sbjct:   20 FEKRIPEGDNRERLVCGRCEFIHYQNPKIVAGAVCTWRDPGDDGGKEKILLAKRAIEPRKGFWTLPAGYMELGETTEQAAQREAREEACATIEIDRLLAMYSVARIGQVQIMYRARLLSADVAAGPESEDVALVDWADIPWDQLAFPTVVWALAHFHESRD 180          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: OFX01535.1 (NUDIX hydrolase [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14])

HSP 1 Score: 162.5 bits (410), Expect = 1.400e-36
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 0
Query:   50 FELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWAL 200
            FE R    D+  RL C  C  I Y NPKI+ GAV T+RD  G    LL +RAI PRKG   L AGYME GE+  QAA REAREEA A+IE+  +L +Y ++ IGQV I ++A L + D+ PG ES++  LV W DI WE+LAFPTV WAL
Sbjct:    9 FEPRIPDGDNRERLVCARCEFIHYQNPKIVAGAVCTWRDDKGADKILLAKRAIEPRKGFWTLPAGYMELGETTEQAAAREAREEACATIEIERLLAMYSVARIGQVQIMYRARLANADVAPGIESEEVALVDWADIPWEQLAFPTVVWAL 158          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: WP_028466147.1 (NUDIX domain-containing protein [Nisaea denitrificans])

HSP 1 Score: 159.1 bits (401), Expect = 1.600e-35
Identity = 77/147 (52.38%), Postives = 98/147 (66.67%), Query Frame = 0
Query:   58 DDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWRE 205
            D+  RL C  C  I Y NPKI++GAV+T+ D      FLLC+RAI PR G   L AG+ME+GES    A REA EEA A IE+G +LGVY+I  I QV + ++A L SPD+ PG ES+D  L  W++I W+E+AFPTV WA   +RE
Sbjct:   20 DERERLVCTDCGFINYINPKIVVGAVVTWEDK-----FLLCKRAIEPRIGYWTLPAGFMEEGESTQDGAAREAWEEANARIEIGPLLGVYNIPRISQVQMIYRARLLSPDVSPGIESEDVGLFTWDEIPWDEIAFPTVHWAFAHYRE 161          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: WP_094454294.1 (NUDIX domain-containing protein [Niveispirillum lacus] >OYQ36568.1 NUDIX hydrolase [Niveispirillum lacus])

HSP 1 Score: 158.3 bits (399), Expect = 2.700e-35
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 0
Query:   58 DDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWR 204
            +D  RL C  CS+I Y+NPKI++GAV+T  D  G+  FLLCRRAIPPR+G   L AGYME  E+  Q A REA EEAGA I + ++L +Y+I  I QV + ++ATL  P +  G ES +  L  W+DI W+ELAFP+V WAL  WR
Sbjct:   27 EDRERLVCPDCSYIAYENPKIVVGAVVT--DNLGR--FLLCRRAIPPRRGFWTLPAGYMELNETTEQGAAREAMEEAGAHIAIDALLAIYNIPRISQVQMIYRATLAGPTLAAGTESLEVALFDWKDIPWDELAFPSVVWALHEWR 168          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: WP_009540606.1 (NUDIX hydrolase [Caenispirillum salinarum] >EKV30539.1 FAD pyrophosphatase [Caenispirillum salinarum AK4])

HSP 1 Score: 157.9 bits (398), Expect = 3.600e-35
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 0
Query:   58 DDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMA 202
            D+ PR+ C  C  I Y+NPKII+GAV+T+ D      +LL RRAI PRKG   + AG+ME  ES    A RE  EEA A +EVG++LGVY + HI QVH+ ++A + +PD   GYESQ+  LV W DI W ELAFP+V WAL A
Sbjct:   20 DERPRMVCDDCGFINYENPKIIVGAVVTWGDK-----YLLARRAIEPRKGFWTIPAGFMELNESAEAGAAREVMEEAQAEVEVGALLGVYSLHHINQVHLIYRAEMTTPDHGAGYESQEVALVDWADIPWSELAFPSVRWALEA 158          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: WP_073132804.1 (NUDIX domain-containing protein [Roseomonas rosea] >SHI89631.1 ADP-ribose pyrophosphatase YjhB, NUDIX family [Roseomonas rosea])

HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35
Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 0
Query:   50 FELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITY---RDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWRE 205
            FE R+   DD  RLTC+ C  I Y+NPK+++G+V+              LLCRRAI PR+G   L AGY+E  E++ + A+REA EEA A IE   +L VY I+ +GQV + F+A L  P  E G ES + R   W+DI W+E+AFPTV WAL AWRE
Sbjct:    5 FERRRQEGDDQDRLTCRDCGFIAYENPKVVVGSVVAVPGAXXXXXXXAVLLCRRAIEPRRGFWTLPAGYLEMHETVEEGARREAWEEARARIETEGVLAVYSIARLGQVQVMFRARLAEPGFEAGPESLEVRAFAWDDIPWDEIAFPTVHWALNAWRE 162          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: PPR72938.1 (hypothetical protein CFH05_01254 [Alphaproteobacteria bacterium MarineAlpha3_Bin4])

HSP 1 Score: 157.1 bits (396), Expect = 6.100e-35
Identity = 72/152 (47.37%), Postives = 104/152 (68.42%), Query Frame = 0
Query:   58 DDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWREQEEGG 210
            DD  RL C  C +I Y+NPK+++GAV  ++D      FL+CRRAI PR+G   + AGY+E GE+ +  A+RE +EEAGA + +  +LG+Y+I HI QV+++ +A +  P+  PG ES+   LV+W DI W+ELAFP+V+WAL   R  +EGG
Sbjct:   18 DDRIRLVCPDCGYISYENPKVVVGAVCVWQD-----RFLICRRAIEPRQGRWTIPAGYLELGETTADGARREVQEEAGAEVRIIGLLGLYEIPHINQVYVFHRAKMTGPEFAPGQESEAVELVQWADIPWDELAFPSVAWAL---RRYDEGG 161          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: WP_020699124.1 (NUDIX hydrolase [Reyranella massiliensis])

HSP 1 Score: 156.8 bits (395), Expect = 7.900e-35
Identity = 79/150 (52.67%), Postives = 100/150 (66.67%), Query Frame = 0
Query:   50 FELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWAL 200
            FE R    D+  RL C  C  I Y NPKI+ GAV T+ D   + + LL RRAI PR+G   + AGYME GE+  QAAQREAREEA A+IE+  +L +Y ++ IGQV I ++A L S D+ PG ES++  LV W DI W++LAFPTV WAL
Sbjct:   25 FEKRIPDGDNRERLVCGRCEFIHYQNPKIVAGAVCTWGDGANEKI-LLARRAIEPRRGFWTMPAGYMELGETTEQAAQREAREEACATIEIDRLLAMYSVARIGQVQIMYRARLVSADVAPGIESEEVALVDWADIPWDQLAFPTVVWAL 173          
BLAST of NO12G03270 vs. NCBI_GenBank
Match: KPF86838.1 (NUDIX hydrolase [alpha proteobacterium AAP38])

HSP 1 Score: 156.8 bits (395), Expect = 7.900e-35
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 0
Query:   58 DDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWREQ 206
            +D  RL C  CS+I Y+NPKI++GAV+T  D  G+  FLLCRRAI PR+G   L AGYME  E+  Q A REA EEAGA I + ++L VY+I  I QV + ++A L  P I  G ES +  +  W+DI W+ELAFP+V WAL  WRE+
Sbjct:   27 EDRERLVCPDCSYIAYENPKIVVGAVVT--DDAGR--FLLCRRAIQPRRGFWTLPAGYMELNETTEQGAAREAMEEAGARIAIDALLAVYNIPRISQVQMIYRARLSDPAIAAGVESLEVGMFAWKDIPWDELAFPSVVWALHEWREK 170          
The following BLAST results are available for this feature:
BLAST of NO12G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25723.12.700e-7571.98nudix hydrolase [Nannochloropsis gaditana][more]
OJU31924.15.000e-3752.80NUDIX hydrolase [Alphaproteobacteria bacterium 65-... [more]
OFX01535.11.400e-3654.00NUDIX hydrolase [Alphaproteobacteria bacterium RIF... [more]
WP_028466147.11.600e-3552.38NUDIX domain-containing protein [Nisaea denitrific... [more]
WP_094454294.12.700e-3552.74NUDIX domain-containing protein [Niveispirillum la... [more]
WP_009540606.13.600e-3552.78NUDIX hydrolase [Caenispirillum salinarum] >EKV305... [more]
WP_073132804.14.700e-3548.10NUDIX domain-containing protein [Roseomonas rosea]... [more]
PPR72938.16.100e-3547.37hypothetical protein CFH05_01254 [Alphaproteobacte... [more]
WP_020699124.17.900e-3552.67NUDIX hydrolase [Reyranella massiliensis][more]
KPF86838.17.900e-3552.03NUDIX hydrolase [alpha proteobacterium AAP38][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010281NSK010281Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03270.1NO12G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|648625gene_5502Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100154g11gene4799Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03270.1NO12G03270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03270 ID=NO12G03270|Name=NO12G03270|organism=Nannochloropsis oceanica|type=gene|length=1197bp
ACAGGCTGAAAAGGTCTCGGGCGCCTGCCCTGGACAATGCTGCCGCTTGT
CGCCTCCAGCAGCCTCCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCC
TTCGCCGGAGCAGAGGCATACATAGTTGGAGACGATGGCTTGGCACCTCA
TCATCACCCACGGGGGAACAAGACTTGTCGGGCTTCGAGTTACGACAGTA
TGGCAAGGACGATCCTCCGCGATTGACGTGTAAGACTTGCTCGCATATCC
TTTATGACAACCCTAAGgtaagcacaagtgcgtaggaaaacaccctccct
cccctctattccgtctctcacccctttccctcagacacaaagcatcatac
gatgaatgtttccctgccgcaagaagtttgtaatcgtatgatcactcaca
catacaggatgctcaccgcattcacttccatctccctccctccgttctct
accgcagATAATAATCGGCGCCGTCATTACCTACCGGGACCCAACTGGAA
AACCTCTCTTCCTCCTCTGTCGTCGAGCAATTCCTCCTCGTAAAGGCCTC
CTCAATCTGTGCGCAGGGTACATGGAAAAAGGCGAGTCCCTTTCCCAGGC
CGCCCAGCGCGAAGCCCGGGAAGAAGCGGGAGCGTCGATAGAAGTCGGCT
CCATCCTTGGAGTCTACGACATTTCTCACATCGGACAAGTTCATATTTAT
TTCAAGgtaaatcccaatatgtcaaggatgttgcttttaaatccacgctt
atatcgatcttctccatttcccccctcccttcatggccagGCAACACTAA
AGTCCCCAGACATCGAACCCGGATATGAGAGTCAGGACGCCCGATTGGTC
CGTTGGGAAGATATTGAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATG
GGCACTCATGGCCTGGAGGGAGCAGGAGGAGGGGGGGGGGGGGGCGGGCC
GTTGCGGAACCCTGTGTTGAAGGGACATGAGGGGAGCACGAATGTGTGGT
ATCGACCAGATAAGGGCGGCCTGATATTTGACGACACTTGGCTGCATCGG
AGGAAGGAGGGTGGGGGGACGGGAAAAGGTGGGAGATGAGGAGGGGGAGG
AGGAGGAGGGCCCTTGGAATTAGTAGGTGTCTCTTGTGTATGTAGCATAC
ATAGAAACGGCGTTCGCACAAGCGGAAGCAACAAAGCATATATCTTA
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protein sequence of NO12G03270.1

>NO12G03270.1-protein ID=NO12G03270.1-protein|Name=NO12G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MLPLVASSSLLLVSRSTSSLLLRRSRGIHSWRRWLGTSSSPTGEQDLSGF
ELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRR
AIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDIS
HIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALM
AWREQEEGGGGAGRCGTLC*
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Synonyms
Publications