NO12G03260, NO12G03260 (gene) Nannochloropsis oceanica

Overview
NameNO12G03260
Unique NameNO12G03260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1111
Alignment locationchr12:902967..904077 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase, ATP-dependent, SK12/DOB1 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:902967..904077 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025696rRNA_proc-arch_dom
IPR012961Ski2_C
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0006139nucleobase-containing compound metabolic process
Homology
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: EWM25730.1 (superkiller viralicidic activity 2-like 2 [Nannochloropsis gaditana])

HSP 1 Score: 511.1 bits (1315), Expect = 2.400e-141
Identity = 263/319 (82.45%), Postives = 289/319 (90.60%), Query Frame = 0 
Query:    1 MGVVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGG-GIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVREDMEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            +GV+L C + LSAVCIHMP ++++LESR  VGR LKEVERRLGG  G GIPLLDPIKDLKI+S+TF TL ERAK+LEEK+   +LR REGW   + AYV+K E +EKAK+LRREAR HQALVMKDDVKRMKRVLRRLGFVD+ENVLQLKGRVACE+NTVDELV TEMIFNGVFNDL+PEQVVAL+GCMCF EKKKEGEQKVREDM AA+GKLK TA AVGKVVQECK+ALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTD FEGTIIR+IRRLDE+LRQLASAS AIGDHTLK+KFEEAS+AIRRDIVFAASLYL
Sbjct:  813 VGVLLPCLETLSAVCIHMPGEIKSLESRSQVGRGLKEVERRLGGENGPGIPLLDPIKDLKIQSDTFKTLLERAKVLEEKMERCRLREREGWRGVYAAYVEKTEAMEKAKLLRREARMHQALVMKDDVKRMKRVLRRLGFVDSENVLQLKGRVACEVNTVDELVVTEMIFNGVFNDLKPEQVVALIGCMCFEEKKKEGEQKVREDMMAAFGKLKSTALAVGKVVQECKLALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDTFEGTIIRVIRRLDEVLRQLASASHAIGDHTLKEKFEEASKAIRRDIVFAASLYL 1131
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: GAX97223.1 (Hypothetical protein PINS_005118 [Pythium insidiosum])

HSP 1 Score: 292.7 bits (748), Expect = 1.300e-75
Identity = 155/317 (48.90%), Postives = 216/317 (68.14%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQ-KVREDMEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D LS++ +++P DLRTLESR  VG+S+KEV +R      G+PLLDPI+D+ I+ E F  + ++ +  EEK+  S     E  E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD + V+Q KGR ACEI+T DEL+ TEMIFNG FNDL   + VALL C+   EK KEG++    E +E    +++ETAR + K++Q+ KI +D +EYAE FN  +++V+ AW  GAKFS++ K+T+ FEG+IIR +RRL+E+LRQL  A+  IGD  L+ KF E    I+RDIVFAASLYL
Sbjct: 2667 VPLEMLDELSSLRVYIPKDLRTLESRQAVGKSVKEVMKRF---PNGVPLLDPIEDMDIQDEAFRRVIDKIRDAEEKLKASPFHAAEDKESRFALYNLKMESEAKMRELERQIKESKSLVLRDDLRRRRRVLRRLEFVDKDGVIQRKGRTACEISTADELLATEMIFNGQFNDLSVNETVALLSCLINTEKAKEGQKPPAAESLEGPIRQMRETARRIAKIMQDAKITIDVDEYAEQFNTSLVDVVIAWCQGAKFSQICKMTEAFEGSIIRCLRRLEELLRQLTLAAHTIGDIELEKKFAEGGEKIKRDIVFAASLYL 2980
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: OWZ16135.1 (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 288.5 bits (737), Expect = 2.500e-74
Identity = 154/317 (48.58%), Postives = 220/317 (69.40%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVR-EDMEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   DM+S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E FA + E+    E+K++ S+       E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKK+ ++  + E +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  750 VPLEMLDMVSSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFARVIEKTVEAEKKLMSSEFHNATDKEARFALYNIKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDNEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKDSDKPPQAESLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTTLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDIELEKKFDEGGKKLKRDIVFAASLYL 1063
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: XP_008872715.1 (hypothetical protein H310_08654 [Aphanomyces invadans] >ETV98518.1 hypothetical protein H310_08654 [Aphanomyces invadans])

HSP 1 Score: 287.3 bits (734), Expect = 5.600e-74
Identity = 159/317 (50.16%), Postives = 216/317 (68.14%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D LS++ +++P DLRT ESR+ V +SL EV RR      G+PLLDPIKD++I+   FA +  +     E +  S  R        F  YVQK+    K + L R+ +  Q+LV+KDD++R KRVLRRL FV+AENV+Q KGR ACE++T DEL+ TE+IFNG FNDL  ++ VALL C+   EK KEG++    D +E     +++TAR V K +QE  I++D EEYA SFN +M++VL AW  GAKFS++ K+TD+FEG+IIR+IRRL+E+LRQL  A+ +IG+  L+ KFE   + I+RDIVFAASLYL
Sbjct:  723 VPLAMIDQLSSLRVYIPKDLRTPESRLAVAKSLAEVMRRF---PQGLPLLDPIKDMEIDDPAFAKIVRQIADTTEAIAASPQRNNSA---AFALYVQKMGCEAKERELERQIKDSQSLVLKDDLRRRKRVLRRLEFVNAENVIQRKGRTACEVSTADELLVTELIFNGAFNDLNVKECVALLSCLINTEKVKEGQKPPTADTLEGPILNMRDTARRVAKTMQEANISIDVEEYATSFNTNMVDVLIAWCEGAKFSQICKMTDMFEGSIIRLIRRLEELLRQLTLAAHSIGNAELEKKFELGGKQIKRDIVFAASLYL 1033
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: ETI31685.1 (hypothetical protein F443_21395 [Phytophthora parasitica P1569])

HSP 1 Score: 285.8 bits (730), Expect = 1.600e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  753 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKESDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1066
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: ETK72032.1 (hypothetical protein L915_20795, partial [Phytophthora parasitica] >ETO60365.1 hypothetical protein F444_21414, partial [Phytophthora parasitica P1976])

HSP 1 Score: 285.8 bits (730), Expect = 1.600e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  760 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKESDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1073
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: ETL25461.1 (hypothetical protein L916_20677, partial [Phytophthora parasitica] >ETM31948.1 hypothetical protein L914_20554, partial [Phytophthora parasitica] >ETP01458.1 hypothetical protein F441_21284, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 285.8 bits (730), Expect = 1.600e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  760 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKESDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1073
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: ETP29649.1 (hypothetical protein F442_21233 [Phytophthora parasitica P10297])

HSP 1 Score: 285.8 bits (730), Expect = 1.600e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  753 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKESDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1066
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: ETL78696.1 (hypothetical protein L917_20539 [Phytophthora parasitica] >KUF96101.1 hypothetical protein AM588_10005799 [Phytophthora nicotianae])

HSP 1 Score: 285.0 bits (728), Expect = 2.800e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  753 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKETDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1066
[Close]
BLAST of NO12G03260 vs. NCBI_GenBank
Match: XP_008898285.1 (hypothetical protein PPTG_06148 [Phytophthora parasitica INRA-310] >ETN15871.1 hypothetical protein PPTG_06148 [Phytophthora parasitica INRA-310])

HSP 1 Score: 285.0 bits (728), Expect = 2.800e-73
Identity = 153/317 (48.26%), Postives = 217/317 (68.45%), Query Frame = 0 
Query:    3 VVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIPLLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQKVEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGRVACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKVRED-MEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWTLGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFEEASRAIRRDIVFAASLYL 319
            V L   D++S++ +++P DLRTLESR  VG+S+KEV RR      G+PLLDP +D+ I+ E F  + E+    E+K+  S        E RF  Y  K+E   K + L R+ +  ++LV++DD++R +RVLRRL FVD E V+Q KGR ACE++T DEL+ TEMIFNG FNDL     VALL C+   EKKKE ++  + D +E    +L+ETA+ + KV+Q+ KI +D +EYA +FN  +++V+ AW  GAKFS++ K++D FEGTIIR +RRL+E+LRQL  A+ +IGD  L+ KF+E  + ++RDIVFAASLYL
Sbjct:  753 VPLEMLDLISSLRVYIPKDLRTLESRQAVGKSVKEVLRRF---PQGVPLLDPREDMDIQDEQFLRVIEKTVDAEKKLKSSAFHNAADKEARFALYNLKMESEAKMRELERKIKESKSLVLRDDLRRRRRVLRRLEFVDKEGVIQRKGRTACEVSTTDELLVTEMIFNGQFNDLSVNDTVALLSCLINTEKKKETDKPPQADSLEIPVRQLRETAQRIAKVMQDAKITIDVDEYAGAFNTSLVDVVIAWCQGAKFSQICKMSDAFEGTIIRCLRRLEELLRQLTLAAHSIGDVELEKKFDEGGKKLKRDIVFAASLYL 1066
The following BLAST results are available for this feature:
BLAST of NO12G03260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25730.12.400e-14182.45superkiller viralicidic activity 2-like 2 [Nannoch... [more]
GAX97223.11.300e-7548.90Hypothetical protein PINS_005118 [Pythium insidios... [more]
OWZ16135.12.500e-7448.58DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
XP_008872715.15.600e-7450.16hypothetical protein H310_08654 [Aphanomyces invad... [more]
ETI31685.11.600e-7348.26hypothetical protein F443_21395 [Phytophthora para... [more]
ETK72032.11.600e-7348.26hypothetical protein L915_20795, partial [Phytopht... [more]
ETL25461.11.600e-7348.26hypothetical protein L916_20677, partial [Phytopht... [more]
ETP29649.11.600e-7348.26hypothetical protein F442_21233 [Phytophthora para... [more]
ETL78696.12.800e-7348.26hypothetical protein L917_20539 [Phytophthora para... [more]
XP_008898285.12.800e-7348.26hypothetical protein PPTG_06148 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03260.1NO12G03260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03260.1NO12G03260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03260 ID=NO12G03260|Name=NO12G03260|organism=Nannochloropsis oceanica|type=gene|length=1111bp
ATGGGAGTGGTGCTTGGGTGTTTTGATATGTTGAGTGCTGTGTGTATTCA
TATGCCAGCGGATTTGAGGACGTTGGAAAGCCGGGTGATCGTGGGGAGGA
GTTTGAAAGAGGTAGAGAGACGACTGGGGGGAGCGGGGGGAGGAATCCCG
TTGCTGGATCCGATCAAGGACTTGAAGATTGAGAGTGAAACATTTGCAAC
GCTGTGGGAACGGGCAAAGTTGCTGGAGGAGAAGGTAGTGGGGAGTAAGT
TGAGGGGGAGGGAGGGGTGGGAGGAGAGGTTTAAAGCGTATGTGCAGAAG
GTGGAGGGGCTGGAGAAGGCGAAAGTGTTGAGGAGGGAGGCAAGGGCGCA
TCAGGCGCTGGTAATGAAGGATGATGTAAAACGAATGAAGAGGGTATTGA
GGAGGTTGGGATTTGTTGACGCAGAGAATGTGTTGCAGCTTAAGGGCAGG
GTGGCTTGTGAGATCAACACGGTGGATGAGCTTGTCACTACGGAGATGAT
TTTCAATGGAGTCTTCAACGACTTGAGGCCCGAGCAGGTTGTGGCTTTGC
TTGGATGTATGTGTTTTGCAGAAAAGAAAAAAGAAGGAGAGCAGAAGGTG
AGGGAGGACATGGAGGCGGCTTATGGAAAACTGAAGGAGACAGCGAGGGC
AGTAGGAAAGGTGGTGCAGGAGTGTAAGATTGCACTGGACCCGGAAGAGT
ACGCCGAGAGTTTCAACCCAGACATGATTGAGGTGTTGTATGCTTGGACG
CTGGGCGCCAAGTTTTCGGAAGTTATCAAATTGACGGATATTTTCGAGGG
TACCATCATTAGAATTATAAGGCGGTTGGATGAGATGCTGCGGCAGCTGG
CCTCGGCATCGAGTGCGATTGGGGATCATACTTTGAAGGATAAGTTCGAG
GAGGCGAGCAGGGCGATCCGAAGGGATATTGTTTTTGCGGCCTCGCTTTA
CTTGTAATGTTGAAGGGTGAGCGGGGGTCACAATCGGGGAGATGAACGCG
GATGAGCGACAGAAAAGCAAAGCAAGGTTAAATTAAATGCGAAAAGCAAA
ATTGAAGCGCCAGCGAAGGAAAAGAGAAAAAAGCAAGCAAGCAAACGACA
CGATTGATGAA
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protein sequence of NO12G03260.1

>NO12G03260.1-protein ID=NO12G03260.1-protein|Name=NO12G03260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MGVVLGCFDMLSAVCIHMPADLRTLESRVIVGRSLKEVERRLGGAGGGIP
LLDPIKDLKIESETFATLWERAKLLEEKVVGSKLRGREGWEERFKAYVQK
VEGLEKAKVLRREARAHQALVMKDDVKRMKRVLRRLGFVDAENVLQLKGR
VACEINTVDELVTTEMIFNGVFNDLRPEQVVALLGCMCFAEKKKEGEQKV
REDMEAAYGKLKETARAVGKVVQECKIALDPEEYAESFNPDMIEVLYAWT
LGAKFSEVIKLTDIFEGTIIRIIRRLDEMLRQLASASSAIGDHTLKDKFE
EASRAIRRDIVFAASLYL*
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Synonyms
Publications