NO12G03180, NO12G03180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_004985656.1 (SWR1-complex protein 4 [Setaria italica] >KQK92517.1 hypothetical protein SETIT_035742mg [Setaria italica]) HSP 1 Score: 89.4 bits (220), Expect = 3.700e-14 Identity = 80/296 (27.03%), Postives = 119/296 (40.20%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREG-MARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK + + W + F +SAR D +L +HWV+ P DY FA++N + +++TDEEY+ +L + AW EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV ++L + R V P + D++D +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLKRRPAAEKEKVAWQWLPFTSSARSDNLQL--------------------------------YHWVRVVNGVPPTGDYQFAKYNKKVDVLKYTDEEYEKYLID--------------------PAWSREETDQLFELCERFDLRFIVIADRFPTT-----------------------------------RSVEDLKSRYYSVSRSLLIHRARSF-----------DDVSGNPLVK---DSYDAAHETERKRALSALLSQTKQQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_021769995.1 (SWR1-complex protein 4-like isoform X2 [Chenopodium quinoa]) HSP 1 Score: 89.0 bits (219), Expect = 4.900e-14 Identity = 80/294 (27.21%), Postives = 117/294 (39.80%), Query Frame = 0 Query: 102 RKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 RKP G+SREV+ L G G+ P + + LK +R + W + +F NSARKD +L +HWV+ P DYPFA++N +++TDEEY+ +L + W EET L ELC RFDLR+ +I DRF PSP R++E+L+ RYYSV + L +AR P V P + E ++ E R+ L+ + ++K +E Sbjct: 30 RKPDGISREVYMLTG--GVPPLMPAIDVAQLKKRRPTDEKVTWQWLSFTNSARKDNLEL--------------------------------YHWVRVVNGVPPTGDYPFAKYNKSVDVIKYTDEEYENYLTD--------------------PKWTKEETDTLFELCERFDLRFVLIADRF----------------------------------PSP-RTVEELKDRYYSVTRALLIAR-----------APSPADVSGHPLIKE---PYNAKQETERKRALSMVLSQTKHQE 220
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_021769994.1 (SWR1-complex protein 4-like isoform X1 [Chenopodium quinoa]) HSP 1 Score: 89.0 bits (219), Expect = 4.900e-14 Identity = 80/294 (27.21%), Postives = 117/294 (39.80%), Query Frame = 0 Query: 102 RKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 RKP G+SREV+ L G G+ P + + LK +R + W + +F NSARKD +L +HWV+ P DYPFA++N +++TDEEY+ +L + W EET L ELC RFDLR+ +I DRF PSP R++E+L+ RYYSV + L +AR P V P + E ++ E R+ L+ + ++K +E Sbjct: 30 RKPDGISREVYMLTG--GVPPLMPAIDVAQLKKRRPTDEKVTWQWLSFTNSARKDNLEL--------------------------------YHWVRVVNGVPPTGDYPFAKYNKSVDVIKYTDEEYENYLTD--------------------PKWTKEETDTLFELCERFDLRFVLIADRF----------------------------------PSP-RTVEELKDRYYSVTRALLIAR-----------APSPADVSGHPLIKE---PYNAKQETERKRALSMVLSQTKHQE 220
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_009528012.1 (hypothetical protein PHYSODRAFT_559488 [Phytophthora sojae] >EGZ18954.1 hypothetical protein PHYSODRAFT_559488 [Phytophthora sojae]) HSP 1 Score: 88.6 bits (218), Expect = 6.400e-14 Identity = 97/357 (27.17%), Postives = 131/357 (36.69%), Query Frame = 0 Query: 60 MGDVADILG------GARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSK--KEVGLKDK---REGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR--QXXXXXXXXXXXXXPPQVMFQPGLDEDGDT------FDHTYEKTRRAQLTQLFRRSKEEELEVLR 398 M DVA ILG GA + SE + L G ++K GM REV L+ A + + + LK K R+ +W+ +FRN AR V HW KA + PDY FARFNV+ +TDEEY+A A A ++ W EET +LL+LC RFDLRW V+ D++ N + S RS+ED++ RYY + L R + P LD + F+ YEK R+ QL F R+ EEE E+ R Sbjct: 1 MSDVAQILGLAGPKSGANGAAASELDQLKPTGASPAVRGKQSGGASKQKKLTGMQREVLELLESNHRASHALYQGFGKTTLKQKWQERKKSPAVKWLRKSFRNPAR------------------------AGLPGESGEEGLVLTHWGKAHVEQPDYVFARFNVKCDTTSYTDEEYEA---------------ALANHLDPMMKWTKEETDLLLKLCQRFDLRWVVVTDKY----------------------------NSNPIAKSAPRSMEDIKYRYYEATRLLSEYRDKKTRGELEKKAATGGATSTPSTPVLDTPASSTSEHYRFNIAYEKQRKRQLDLTFSRTAEEENEIRR 290
BLAST of NO12G03180 vs. NCBI_GenBank
Match: KCW50128.1 (hypothetical protein EUGRSUZ_K03560 [Eucalyptus grandis]) HSP 1 Score: 88.6 bits (218), Expect = 6.400e-14 Identity = 71/241 (29.46%), Postives = 97/241 (40.25%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR 339 +RKP G+SREV+ L G G+AP + S LK + + W + F NSARKD +L FHWV+ P DY FA++N +++TDEEY+ +L + AW EET L +LC RFDLR+ VI DRFP + R++E+L+ RYYSV + L AR Sbjct: 29 QRKPDGISREVYALTG--GLAPLMPSVDVSQLKRRPPSDEKVTWQWLPFTNSARKDDLQL--------------------------------FHWVRVVNGVPPTGDYAFAKYNKSANIIKYTDEEYEKYLTD--------------------PAWTKEETDQLFDLCERFDLRFIVIADRFPSS-----------------------------------RTVEELKDRYYSVSRALLSAR 180
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_006654721.2 (PREDICTED: SWR1-complex protein 4 [Oryza brachyantha]) HSP 1 Score: 88.6 bits (218), Expect = 6.400e-14 Identity = 82/297 (27.61%), Postives = 122/297 (41.08%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK +R + + + W + F +SAR D +L +HWV+ P DY FA++N + +++ DEEY+ +L + AW EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTVEASHLK-RRPAVEKEKVTWQWLPFTSSARSDSLQL--------------------------------YHWVRVVNGAPPTGDYHFAKYNKKADVLKYNDEEYEKYLID--------------------PAWSREETDQLFELCERFDLRFIVIADRFP-----------------------------------TDRSMEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EXB55988.1 (DNA methyltransferase 1-associated protein 1 [Morus notabilis]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 80/296 (27.03%), Postives = 120/296 (40.54%), Query Frame = 0 Query: 100 AKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 ++RKP G+SREV+ L G GM P + + LK + + W + F NSARKD +L +HWV+ P DY FA++N V++TDEEY LA+ +W EET L ELC +FDLR+ VI DRFP + R++E+L+ RYYSV +++ +AR P V P + E T++ + EK R+ L+ + ++K++E Sbjct: 28 SQRKPDGISREVYALTG--GMPPLMPTIDSSQLKKRPPVDEKITWQWLPFTNSARKDNLQL--------------------------------YHWVRVVNGVPPTGDYSFAKYNKSIDIVQYTDEEYAKHLAD--------------------PSWTKEETDRLFELCKQFDLRFIVIADRFPSS-----------------------------------RTVEELKNRYYSVSRSILMAR-----------ATSPGDVTGNPLVKE---TYNVSQEKERKRALSMVLSQTKQQE 220
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_017419300.1 (PREDICTED: SWR1-complex protein 4 [Vigna angularis] >KOM39380.1 hypothetical protein LR48_Vigan03g276200 [Vigna angularis] >BAT86229.1 hypothetical protein VIGAN_04386100 [Vigna angularis var. angularis]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 69/243 (28.40%), Postives = 99/243 (40.74%), Query Frame = 0 Query: 99 KAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR 339 +++RKP G+SREV+ L G G+AP + S + LK K + + W + F +SARKD +L +HWV+ P DY FA++N +++TDEEY FL W EET L +LC RFDLR+ VI DRFP + R++E+L+ RYYSV + + +AR Sbjct: 26 ESQRKPDGISREVYALTG--GLAPLMPSIEASQLKKKPPPVEKITWQWLPFTSSARKDNLQL--------------------------------YHWVRVVNGVPPTGDYSFAKYNKAVDVIKYTDEEYDKFLTN--------------------PMWTKEETDQLFDLCERFDLRFVVIADRFPSS-----------------------------------RTVEELKDRYYSVSRAILVAR 179
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_016205727.1 (SWR1-complex protein 4 isoform X1 [Arachis ipaensis]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 69/243 (28.40%), Postives = 96/243 (39.51%), Query Frame = 0 Query: 99 KAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR 339 ++ RKP G+SREV+ L G G+ P + S LK K + W + F NSARKD +L +HWV+ P DY FA++N V++TDEEY +L + W EET L ELC RFDLR+ +I DRFP + R++E+L+ RYYSV + + +AR Sbjct: 26 ESHRKPDGISREVYALTG--GVPPLMPSLDSSQLKKKPPSHEKITWQWLPFTNSARKDNLQL--------------------------------YHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYDKYLTD--------------------PMWTKEETNQLFELCERFDLRFIIIADRFPSS-----------------------------------RTVEELKDRYYSVSRAILIAR 179
BLAST of NO12G03180 vs. NCBI_GenBank
Match: PAN18387.1 (hypothetical protein PAHAL_C02147 [Panicum hallii] >PUZ64992.1 hypothetical protein GQ55_3G187400 [Panicum hallii var. hallii]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 79/296 (26.69%), Postives = 119/296 (40.20%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREG-MARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK + + W + F +SAR D +L +HWV+ P DY FA++N + ++TDEEY+ +L + AW EET L ELC RFDLR+ V+ DRFP + RS+EDL++RYYSV ++L + R V P + D++D +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTVEASHLKRRPAAEKEKVAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNGVPPTGDYQFAKYNKKVDVHKYTDEEYEKYLID--------------------PAWSREETDQLFELCERFDLRFIVVADRFPTS-----------------------------------RSVEDLKSRYYSVSRSLLIHRARSF-----------DDVSGNPLVK---DSYDAAHETERKRALSALLSQTKQQE 223 The following BLAST results are available for this feature:
BLAST of NO12G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03180 ID=NO12G03180|Name=NO12G03180|organism=Nannochloropsis oceanica|type=gene|length=4717bpback to top protein sequence of NO12G03180.2 >NO12G03180.2-protein ID=NO12G03180.2-protein|Name=NO12G03180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=527bpback to top protein sequence of NO12G03180.1 >NO12G03180.1-protein ID=NO12G03180.1-protein|Name=NO12G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bpback to top Synonyms
Publications
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