NO12G03180, NO12G03180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EWM25724.1 (dna methyltransferase 1-associated protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 317.8 bits (813), Expect = 6.400e-83 Identity = 226/379 (59.63%), Postives = 243/379 (64.12%), Query Frame = 0 Query: 60 MGDVADILGGARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXN---------------------------------------EATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEVLRRR 400 MGDVADILGGARR Q+SE E LL + G K GG K KRKPAGMSREVFNLIGKEGMAP VVSKK +GLKDKREG ARTRW++TTF+NSARKDQ+K +F+HWVKAATDYPDYPFARFNVQTP VEFTD EYK LAEG A W EET+VLLELC RFDLRWPVI+DRFP+ XXXXXXXXXXXXXXXXXXXXXXX +A+ SP RSIEDLQARYYSVRK LRLAR XXXXXXXXXXX MFQPGLDEDGD FDH YEKTRRAQL +LF+R+KEEELE LR R Sbjct: 1 MGDVADILGGARRPQVSERESLLMETGPKAGGTGGAGGNKGKRKPAGMSREVFNLIGKEGMAPVVVSKKAIGLKDKREGTARTRWIWTTFKNSARKDQDK-----------PEGGEEEGKEGENSGTRKGGIFYHWVKAATDYPDYPFARFNVQTPAVEFTDAEYKTCLAEGGKGA----------------GWSKEETRVLLELCRRFDLRWPVIYDRFPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAVMDASISPR-VRSIEDLQARYYSVRKALRLARHAXXXXXXXXXXXTVAPPMFQPGLDEDGDAFDHAYEKTRRAQLARLFKRTKEEELEELRLR 351
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_005854127.1 (dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >XP_005855994.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >EKU20368.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526] >EKU22232.1 dna methyltransferase 1-associated protein 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 248.8 bits (634), Expect = 3.700e-62 Identity = 133/221 (60.18%), Postives = 145/221 (65.61%), Query Frame = 0 Query: 60 MGDVADILGGARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFP 281 MGDVADILGGARR Q+SE E LL + G K GG K KRKPAGMSREVFNLIGKEGMAP VVSKK +GLKDKREG ARTRW++TTF+NSARKDQ+K +F+HWVKAATDYPDYPFARFNVQTP VEFTD EYK LAEG A W EET+VLLELC RFDLRWP+I+DRFP Sbjct: 6 MGDVADILGGARRPQVSERESLLMETGPKAGGTGGAGGNKGKRKPAGMSREVFNLIGKEGMAPVVVSKKAIGLKDKREGTARTRWIWTTFKNSARKDQDK-----------PEGGEEEGKEGENSGTRKGGIFYHWVKAATDYPDYPFARFNVQTPAVEFTDAEYKTCLAEGGKGA----------------GWSKEETRVLLELCQRFDLRWPIIYDRFP 199
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_020180104.1 (SWR1-complex protein 4 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 97.4 bits (241), Expect = 1.400e-16 Identity = 85/297 (28.62%), Postives = 125/297 (42.09%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK +R + + + W + F +SAR D +L +HWV+ + P DY FA++N + +++TDEEY+ +L E W EET L ELC RFDLR+ VI DRFP A RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ LF ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKVAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNNVPPTGDYDFAKYNTKVDVLKYTDEEYEKYLTE--------------------PTWSREETDQLFELCQRFDLRFIVIADRFPTA-----------------------------------RSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALFSQTKQQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EMS53178.1 (DNA methyltransferase 1-associated protein 1 [Triticum urartu]) HSP 1 Score: 96.7 bits (239), Expect = 2.300e-16 Identity = 86/305 (28.20%), Postives = 124/305 (40.66%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAV-------VSKKEVGLKDK---REGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + ++ V K+K R W + F +SAR D +L +HWV+ + P DY FA++N + +++TDEEY+ +L E W EET L ELC RFDLR+ VI DRFP A RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ LF ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLKRRPVVEKEKLVLLNSCVRVAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNNVPPTGDYDFAKYNTKVDVLKYTDEEYEKYLTE--------------------PTWSREETDQLFELCQRFDLRFIVIADRFPTA-----------------------------------RSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALFSQTKQQE 232
BLAST of NO12G03180 vs. NCBI_GenBank
Match: POM74097.1 (Swr1 complex subunit Swc4 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 92.8 bits (229), Expect = 3.400e-15 Identity = 94/351 (26.78%), Postives = 131/351 (37.32%), Query Frame = 0 Query: 60 MGDVADILG------GARRSQISEGEGLLKDGGFKTGGXXXXXXXKAKRKPAGMSREVFNLIGKEGMAPAVVSK--KEVGLKDK---REGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYPDYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLAR--QXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEVLR 398 M DVA ILG GA + S+ + L G ++K GM REV L+ A + + + LK K R+ +W+ +FRN AR HW KA + PDY F+RFNV++ ++DEEY+A LA ++ W EET +LL LC RFDLRW VI D++ N + + QRS+ED++ RYY V + L R + P D F+ YEK R+ QL +F R+ EEE E+ R Sbjct: 1 MSDVAQILGLAGPKSGANGTAASDLDQLKPSGAPPAARGKQSGGTSKQKKLTGMQREVLELLESNHRASHALYQGFGKTSLKQKWQARQKSPAVKWIRKSFRNPARAS------------------------LTGENGEEGLTLSHWGKAHLEQPDYVFSRFNVKSETTSYSDEEYEAALAHHQDP---------------MMKWTKEETDLLLNLCQRFDLRWVVISDKY----------------------------NSNPVAKAEQRSMEDIKYRYYEVTRLLAEYRDKKTRVATMGAGIASSTPSTPGSASSALDHYRFNIAYEKQRKRQLDLVFSRTVEEENEIRR 284
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_003567993.1 (SWR1-complex protein 4 [Brachypodium distachyon] >KQK05138.1 hypothetical protein BRADI_2g18250v3 [Brachypodium distachyon]) HSP 1 Score: 92.4 bits (228), Expect = 4.400e-15 Identity = 84/297 (28.28%), Postives = 122/297 (41.08%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK +R + + + W + F +SAR D +L +HWVK A P DY FA++N + +++T+EEY+ +L E W EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ L ++K+ E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDSLQL--------------------------------YHWVKVANGVPPSGDYEFAKYNTKVDVLKYTEEEYEKYLTE--------------------PTWSREETDQLFELCERFDLRFIVIADRFP-----------------------------------TNRSVEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQHE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: KFK37486.1 (hypothetical protein AALP_AA4G263600 [Arabis alpina]) HSP 1 Score: 92.0 bits (227), Expect = 5.700e-15 Identity = 82/297 (27.61%), Postives = 118/297 (39.73%), Query Frame = 0 Query: 99 KAKRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 ++ RKP G+SREV+ L G G+AP + S LK + + W + F NSARKD +L +HWV+ D P DY FA++N V++TDEEY+ L + W EET L ELC RFDLR+ +I DRFP + R++E+L+ RYYSV + L AR P V P + E +D T+++ R+ LT + +S+ +E Sbjct: 30 ESHRKPDGISREVYALTG--GVAPLMPSIDVTQLKRRPVADEKVAWKWLPFTNSARKDDLQL--------------------------------YHWVRVVNDVPPTGDYTFAKYNKSVEIVKYTDEEYENHLTD--------------------PVWTKEETDQLFELCERFDLRFTIIADRFPLS-----------------------------------RTLEELKDRYYSVSRALLRAR-----------AQSPADVANHPLMKE---PYDITWDRERKRALTMVLSQSRHQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_015639690.1 (PREDICTED: SWR1-complex protein 4 [Oryza sativa Japonica Group] >AAV67815.1 unknown protein [Oryza sativa Japonica Group] >BAF18097.1 Os05g0540800 [Oryza sativa Japonica Group] >EEC79616.1 hypothetical protein OsI_20813 [Oryza sativa Indica Group] >BAS95117.1 Os05g0540800 [Oryza sativa Japonica Group]) HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14 Identity = 83/297 (27.95%), Postives = 123/297 (41.41%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK +R + + + W + F +SAR D +L +HWV+ P DY FA++N + +++TDEEY+ +L + AW EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNGAPPTGDYHFAKYNKKADVLKYTDEEYEKYLTD--------------------PAWSREETDKLFELCERFDLRFIVIVDRFP-----------------------------------TDRSMEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: EEE64536.1 (hypothetical protein OsJ_19387 [Oryza sativa Japonica Group]) HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14 Identity = 83/297 (27.95%), Postives = 123/297 (41.41%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTR--WVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK +R + + + W + F +SAR D +L +HWV+ P DY FA++N + +++TDEEY+ +L + AW EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV + L +AR +V P + E TF+ +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLK-RRPAVEKEKIAWQWLPFTSSARTDNLQL--------------------------------YHWVRVVNGAPPTGDYHFAKYNKKADVLKYTDEEYEKYLTD--------------------PAWSREETDKLFELCERFDLRFIVIVDRFP-----------------------------------TDRSMEDLKSRYYSVTRALLIARARSF-----------DEVAGNPLVKE---TFNAAHETERKRALSALLSQTKQQE 223
BLAST of NO12G03180 vs. NCBI_GenBank
Match: XP_012700354.1 (SWR1-complex protein 4 [Setaria italica]) HSP 1 Score: 89.7 bits (221), Expect = 2.900e-14 Identity = 80/296 (27.03%), Postives = 119/296 (40.20%), Query Frame = 0 Query: 101 KRKPAGMSREVFNLIGKEGMAPAVVSKKEVGLKDKREG-MARTRWVFTTFRNSARKDQEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVFFHWVKAATDYP---DYPFARFNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETKVLLELCSRFDLRWPVIHDRFPEAIAXXXXXXXXXXXXXXXXXXXXXXXNEATKSPSPQRSIEDLQARYYSVRKTLRLARQXXXXXXXXXXXXXPPQVMFQPGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEE 393 +RKP G+SREV+ L G GMAP + + + LK + + W + F +SAR D +L +HWV+ P DY FA++N + +++TDEEY+ +L + AW EET L ELC RFDLR+ VI DRFP RS+EDL++RYYSV ++L + R V P + D++D +E R+ L+ L ++K++E Sbjct: 29 QRKPDGVSREVYALTGGVGMAPLMPTIEASHLKRRPAAEKEKVAWQWLPFTSSARSDNLQL--------------------------------YHWVRVVNGVPPTGDYQFAKYNKKVDVLKYTDEEYEKYLID--------------------PAWSREETDQLFELCERFDLRFIVIADRFPTT-----------------------------------RSVEDLKSRYYSVSRSLLIHRSRSF-----------DDVSGNPLVK---DSYDAAHETERKRALSALLSQTKQQE 223 The following BLAST results are available for this feature:
BLAST of NO12G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G03180 ID=NO12G03180|Name=NO12G03180|organism=Nannochloropsis oceanica|type=gene|length=4717bpback to top protein sequence of NO12G03180.2 >NO12G03180.2-protein ID=NO12G03180.2-protein|Name=NO12G03180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=527bpback to top protein sequence of NO12G03180.1 >NO12G03180.1-protein ID=NO12G03180.1-protein|Name=NO12G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bpback to top Synonyms
Publications
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