NO12G03070, NO12G03070 (gene) Nannochloropsis oceanica

Overview
NameNO12G03070
Unique NameNO12G03070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr12:845843..847228 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:845843..847228 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G03070 vs. NCBI_GenBank
Match: EWM25737.1 (hypothetical protein Naga_100087g9 [Nannochloropsis gaditana])

HSP 1 Score: 201.8 bits (512), Expect = 2.900e-48
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0 
Query:  127 FTLFLAFALFATTTQAFFPSSPCFQLRSCRSCRVSMSATTVPPLAAPXXXXXKP-RPRREILIEQMIESNGGYMARVKVQNFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYILSKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVEGVAAELR 295
            F L LA  L    T AF  S     +R    CRV MS+  VPP          P RPRREI I Q+IESNGGYMA+V+V+NFKD TEHTVITSKELY ET  LAGKT +++P+EDY++ VFK+I+ KG+ LTRTEGMIDAG+FPINYFSVSQLAIF+DDTVEGVAAELR
Sbjct:   11 FALLLALLL---PTDAFVSSPVLHGVRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAELR 176
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BLAST of NO12G03070 vs. NCBI_GenBank
Match: CBJ26588.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.0 bits (232), Expect = 8.500e-16
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 0 
Query:  181 RPRREILIEQMIESNGGYMARVKVQNFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYILSKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVEGVAA 292
            + +R I ++ + E+  GY++ V V+NFK  T H ++ SKE   +   LAGK VE   V D    V KY+L KG+ L  TEGMI+A +FP+NYF++ QL+ F DD  E + A
Sbjct:   16 KKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVE---VGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVA 123
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BLAST of NO12G03070 vs. NCBI_GenBank
Match: XP_005706912.1 (hypothetical protein Gasu_22990 [Galdieria sulphuraria] >EME30392.1 hypothetical protein Gasu_22990 [Galdieria sulphuraria])

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-8
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 0 
Query:  183 RREILIEQMIESNGGYMARVKVQNFKDATEHTVITSKELYLETVT-LAGKTVEDVPVEDYFKAVFKYILSKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVE 288
            +++I I++  ++NGG+M  V+V + +  + HTV+  K L+ E V     KT E V +      VF Y++ + + L  T+G+ D+  FPINYFSV QL  F  D  E
Sbjct:   78 QQQIEIQKTFKTNGGWMFEVEVNDSRQLSRHTVLLGKGLFEELVAEHTDKTPETVII-----TVFNYLIERKVVLKNTQGVFDSSQFPINYFSVRQLFYFYPDCKE 178
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BLAST of NO12G03070 vs. NCBI_GenBank
Match: CEM38234.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-8
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 0 
Query:  186 ILIEQMIESNGGYMARVKVQ-NFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYILSKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDD 285
            I +E + E NGG+M+ V +       T+HTV     LY + VT A + V+    E   K +FK++L + M++  TEGMID+ +FP+NYFS +Q+    +D
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDP---ETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHED 561
The following BLAST results are available for this feature:
BLAST of NO12G03070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25737.12.900e-4863.91hypothetical protein Naga_100087g9 [Nannochloropsi... [more]
CBJ26588.18.500e-1643.24expressed unknown protein [Ectocarpus siliculosus][more]
XP_005706912.11.300e-836.79hypothetical protein Gasu_22990 [Galdieria sulphur... [more]
CEM38234.11.300e-838.00unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010257NSK010257Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G03070.1NO12G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592662gene_5481Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100087g9gene4782Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G03070.1NO12G03070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G03070 ID=NO12G03070|Name=NO12G03070|organism=Nannochloropsis oceanica|type=gene|length=1386bp
GGGGGACTTGTGTGCTGCGCGCATGTTAGCGGTTAAGACGAGAAGGGCCT
TCACTCAAGCTGTATTAGCGACCATAGCATGGCGTAGGAGAAGAAATGTA
CTCCGTTGCATTCCTTTAATGTCTCTCATCAGGTCCACAAAAGGACGCCT
GCGGAGCTGATAAACGCGTGCACGAGCCACAAAGTACGTCAGAAAATCAT
GTGTCTGGCATGGTACTGGTCTCGGTGCGACGGACTTCAAACGTGAGGCG
TGTCTTCGTATGGGCAGGGGCCCGCTCCCGCACGGCGATTGAGATTCCCC
TCGCCGTTCAAAAGGAGGACCCCTTCTCTGTGTTCTTGCTTCTCATTGTC
CATTCCAACACCCAGTCCACGCTTTCTCCTCGACGACCAACGCGCTTCCT
TTCCCCAAGCTATTCTCTCTTCCGCAATCACTTAACCCTCTCCTCCACCG
ACACTCACATTCTGGCACACTCAGGTCAAATATCTAGCGGCGTTCGCCCA
GTCTGCACTTCAACTTCACCAGCTTTTTTACCCTTAGCCATGCCCGCCTG
TACACCCGCCACGGCACGGTTGGCCACGCCGATGCTCTTCACCCTCTTTC
TCGCTTTCGCCCTCTTTGCCACGACGACGCAGGCCTTCTTCCCCTCGTCC
CCCTGCTTCCAACTCCGCAGCTGCAGGAGTTGCCGAGTCTCCATGTCCGC
CACCACCGTTCCCCCCCTTGCTGCCCCCGCCGCCGCCGCCGCCAAGCCTC
GTCCTCGTCGGGAGATTCTCATCGAACAAATGATTGAAAGCAATGGTGGA
TATATGGCCCGCGTGAAAGTGCAGAACTTCAAGGACGCGACCGAGCACAC
GGTCATTACCAGCAAGGAGCTATACCTGGAGACAGTAACCTTGGCAGGGA
AGACGGTCGAGGACGTGCCGGTGGAGGATTATTTCAAGGCTGTGTTTAAG
TATATTCTCAGCAAAGGCATGGCTCTGACTAGGACAGAGGGCATGATCGA
CGCAGGCATTTTCCCGATCAACTACTTCAGTGTTTCGCAGTTGGCCATTT
TCATGGATGATACCGTTGAGGGGGTTGCGGCGGAGCTTCGGTAGGTATGA
GCAGAACGGAGAAAAGAGAGCGAAGGATGAAGAGGCTTAGGCTTGTGTGT
CAGAAAGGAAGACAGATGGGTAGGAGGGGTAGAAAAAAAGAAGAGAAGTG
GGATAAGGCATTTTTGTAAGGCGCCGAAAAGAGGAGCAGCAGGGACGGGA
ATGGCTAAAGAGGCCGTGTTTATCTTCCCAAGAAGTCGGAGGGAGGGCAT
AGGGGGGGAGGATCACAAGCAATAGGTAACGCTATTTGCCATTCAAACCA
GCCTAGTGCAATAGAGAAAAGAAAAACAAGAGGAAG
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protein sequence of NO12G03070.1

>NO12G03070.1-protein ID=NO12G03070.1-protein|Name=NO12G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MVLVSVRRTSNVRRVFVWAGARSRTAIEIPLAVQKEDPFSVFLLLIVHSN
TQSTLSPRRPTRFLSPSYSLFRNHLTLSSTDTHILAHSGQISSGVRPVCT
STSPAFLPLAMPACTPATARLATPMLFTLFLAFALFATTTQAFFPSSPCF
QLRSCRSCRVSMSATTVPPLAAPAAAAAKPRPRREILIEQMIESNGGYMA
RVKVQNFKDATEHTVITSKELYLETVTLAGKTVEDVPVEDYFKAVFKYIL
SKGMALTRTEGMIDAGIFPINYFSVSQLAIFMDDTVEGVAAELR*
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Synonyms
Publications