NO12G02980, NO12G02980 (gene) Nannochloropsis oceanica

Overview
NameNO12G02980
Unique NameNO12G02980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1799
Alignment locationchr12:821091..822889 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:821091..822889 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
Homology
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BLAST of NO12G02980 vs. NCBI_GenBank
Match: EWM25735.1 (hypothetical protein Naga_100087g18 [Nannochloropsis gaditana])

HSP 1 Score: 270.0 bits (689), Expect = 6.200e-69
Identity = 127/143 (88.81%), Postives = 136/143 (95.10%), Query Frame = 0 
Query:    1 MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLKDSSIRGVRVGATWNLLSEDGVLVTSRHEKLTPILLTPDPGEDPQLGKGRGYTNFYRPSSDLEVFMLTCDFVIREVVREEGVG 144
            MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLK+ ++RG+RVGATWNLLSE+GVL+TSRHEKLTPILLTPDPG+DPQLGKGRGYTNFYRP  DLE F LTCDFV+REVVRE+  G
Sbjct:    1 MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGFIGVYLTCLSLKNPALRGIRVGATWNLLSEEGVLITSRHEKLTPILLTPDPGDDPQLGKGRGYTNFYRPPPDLETFTLTCDFVVREVVREDAGG 143
The following BLAST results are available for this feature:
BLAST of NO12G02980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25735.16.200e-6988.81hypothetical protein Naga_100087g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010244NSK010244Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02980.1NO12G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100087g18gene4774Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02980.1NO12G02980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02980 ID=NO12G02980|Name=NO12G02980|organism=Nannochloropsis oceanica|type=gene|length=1799bp
TGTTCTGCTGCTTTTTACACCACAACAGGAACGCTCTGACATATATTGTG
AAGACTAGGGACAAAAGATTGGAGAGCCTCGACGCAAAGgtaagggtggc
tgcatgggtggggcagaagccagggggaaggatcgcttttgctgatgatc
acgacggcattgaggagaagagcactgcggtagtctgcactatatgatac
cagcttacaaacatcgtcaatttaagaataaggagaagagagcgctgagg
aggggatggatgccttaaaggggttgggctgggtctgcaaggggtggatt
ggagcggccgcgtggtgaatagcaagcggcttctcttgtggaagttccct
tgtttttgatcgcaatgatgcacacacatacatacatatacactccccct
tactttccatttttcccattccttactgataatggacagCAAGCAAAGCC
AGGCAGCAAGAAGAGAGGATGATCCGACTTCGCGTCAAGTCACTGTCGGA
GCTACGAGAGAAGCATCAAGCGGGCGATTACGTCTCGGGCACTGTTTTTA
GCACACCAGAAGGCAGCTTCACTATCAGgtataaaggccctggcgataga
cagatccctcccttcctttcttcctcttttccttccttgccaaggcaaat
ttgtctcactcaaccctccctccctccctccctccctcctctagTCTGTA
TCCTACAGGCGACAAGCTGTCCAACCCCGGCTTCATCGGGGTTTACCTCA
CCTGTCTATCCCTCAAGGATTCCTCTATCCGCGGCGTGCGGGTGGGGGCC
ACGTGGAACCTCCTGTCCGAGGACGGAGTGCTGGTGACCTCGCGCCATGA
GAAACTGACTCCCATCTTGCTGACCCCAGACCCGGGGGAGGACCCTCAAT
TGGGGAAGGGAAGGGGATACACGAATTTTTATCGGCCTTCCTCAGATCTG
GAGGTATTCATGTTGACCTGCGACTTTGTGATACGAGAGGTGGTGAGGGA
GGAGGGGGTTGGGGCGGTGATGATGGTGATGAAGGGAGGAGAGGAGGGAG
GGATGGGGGCCGTGGGAGGGGGGGAGGGGGGGGGGGACAATGATGATGGA
GGGGTCGATGGAGGGGCTGTTGAGTACTgtaagacgagtgcacgagaagg
agatggagaggagccggagagcgagggtgttagcggtggaggagctagtg
gagttgagtcaagaggatctgttgaagttgcaggaaaatctggcgtgtgc
cttgacaaagaaatgcgagatcgataggtattgctcgatttgcttggaga
ggcagaaagatcacgtgtgcgtcccctgtgggcatcggtactgcggttcg
tgcatagcccaggtggagcgctgtgcggagtgtagggagaaaatcacaca
gaagctgaagtgtttctagggcgaggaggggagttttggagggaaggagc
gagggaaggagggttgtgcacataaatttacatccaggaagagacgggag
gagtgaggcatggggagagacacaggcaggcagaaaaggaaaggattact
tgtgaatacagtgctcgccctccttatcctctattctgtcttcgatcatt
tttcctggcacgtacaaaggatgcgagcgttgagagagatggagagggat
gtggaaagacacggacacgcacgagttgtttcagaacaaccaatcagtcg
tcgtaagcagATAGCAGCAGTAGTATTAGCAGCAGCAGCAGCAGCAGCAG
CAGTACCAGCAGCAACAGCAACAGCATCAGAATGATGACATGTACATAG
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protein sequence of NO12G02980.1

>NO12G02980.1-protein ID=NO12G02980.1-protein|Name=NO12G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MIRLRVKSLSELREKHQAGDYVSGTVFSTPEGSFTISLYPTGDKLSNPGF
IGVYLTCLSLKDSSIRGVRVGATWNLLSEDGVLVTSRHEKLTPILLTPDP
GEDPQLGKGRGYTNFYRPSSDLEVFMLTCDFVIREVVREEGVGAVMMVMK
GGEEGGMGAVGGGEGGGDNDDGGVDGGAVEYYSSSSISSSSSSSSSTSSN
SNSIRMMTCT*
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Synonyms
Publications