NO12G02940, NO12G02940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_005854608.1 (tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526] >EKU21752.1 tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 224.6 bits (571), Expect = 6.400e-55 Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 0 Query: 271 PKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWLKVQRSPHWSVVPEE 415 PKDLLLRDLTRCT+ LL+PLHFLR ENL DCKLLCGPV GPVYL+ C GCTLY+ASRQLRIH TYDTTLYVH +GP+IEDCD L F PWAL YPG EEQ+ EAG GG NAW+EVKDFKWL+ Q SPHW V+P+E Sbjct: 14 PKDLLLRDLTRCTVSLLSPLHFLRCENLRDCKLLCGPVAGPVYLQDCIGCTLYVASRQLRIHRTYDTTLYVHTVAGPIIEDCDRLCFGPWALAYPGREEQVEEAGL--------GGTENAWREVKDFKWLRAQASPHWQVLPQE 149
BLAST of NO12G02940 vs. NCBI_GenBank
Match: CBN78243.1 (putative: Beta-tubulin folding cofactor C [Ectocarpus siliculosus]) HSP 1 Score: 165.2 bits (417), Expect = 4.600e-37 Identity = 106/314 (33.76%), Postives = 140/314 (44.59%), Query Frame = 0 Query: 103 VEESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWLKVQRSPHWSVVPEEER 417 V E L L +V+ L K+ A+A LFL YD+RRAQEE L + +E RA APRKRF+F R + T K+ P + M+G A KD + DL C + +L L LRL L C+++CGPV GP+Y+E C+ C + A RQLRIH + YV V SGP+IEDC GL+FAP L YP ++ L AG E NAW +VKDFKW + Q+SP+W+V+P+ ER Sbjct: 137 VREELDVLVDRVKGLRKRTAEATLFLTVYDLRRAQEEVGRLWASVESTRAELAPRKRFAFRSKAKAKGRDARRGGGGIPAREEGLARKRVDETGGGEKEA-EGGPGI----------------------RGMKGREVDVSA----------------------EDADKDKDFNVADLDDCKVTILHVLGALRLRRLTSCRVVCGPVRGPIYVEGCRNCVIVTAGRQLRIHESRHVDFYVLVASGPIIEDCSGLRFAPAGLRYPEYQHHLQAAGLE------EDAVTNAWADVKDFKWHRAQQSPNWTVIPDSER 399
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_020012685.1 (tubulin-specific chaperone C [Castor canadensis]) HSP 1 Score: 151.0 bits (380), Expect = 9.000e-33 Identity = 100/316 (31.65%), Postives = 144/316 (45.57%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420 E L + ++Q L K + DA LFL YD+R+ QE + L++ L + R P+KRF+F + R + S+T+ P A GFS+ L H +D+LL +L CTI L + LRL C++LCGPV V+LE C+ C L +A +QLR+H T DT +++HVTS ++EDC G++F+P+ +YPG E+ +G RGR N W V DF WL + SP+WS++PEEER ME Sbjct: 82 ERLEEAAARLQGLRKLLNDAVLFLASYDLRQGQEALAQLQAALARRRQELQPKKRFAF--------------------------KARKKEAASATEGDAAPVAPAAEGLLASSLPLKEEEEEGTLDSSRACGFSNLESQVLE-----------------KRGDELHQRDILLNELKDCTIKLYGNPNALRLAKAHGCRVLCGPVSTSVFLEDCRDCVLAVACQQLRVHTTRDTRIFLHVTSRAIVEDCGGIQFSPYTWSYPGIEQDFQGSGL-DRGR-------NNWNTVDDFNWLARDVPSPNWSILPEEERKME 346
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_005359780.1 (PREDICTED: tubulin-specific chaperone C [Microtus ochrogaster]) HSP 1 Score: 147.9 bits (372), Expect = 7.600e-32 Identity = 96/313 (30.67%), Postives = 144/313 (46.01%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417 E L + ++Q L K + D+ LFL PYD+R+ QE + L++ L + R P+KRF+F D +++ + P+P +A GFS+ L N H +D+LL DLT CT+ L + LRL CK+LCGPV V+LE C C L +A +QLR+H T DT +++ VTS ++EDC G++FAP+ +Y G ++ ++G RGR N W + DF WL + SP+WS++PEE+R Sbjct: 81 ERLEEAANRLQGLRKLLNDSVLFLAPYDLRQGQEALAQLQAALAERRLELQPKKRFAF--------------------KARKKDAAGATQVDAAPGASSAPSPPLATEEGAPCLSWAC-------------GFSNLESQDLEKNADEL-----------------HQRDILLSDLTNCTVRLRGNPNTLRLAKARSCKVLCGPVSTSVFLEDCCDCVLAVACQQLRVHTTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYQGIDKDFEDSGL-DRGR-------NNWNHIDDFNWLARNVASPNWSILPEEDR 335
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_004739947.1 (PREDICTED: tubulin-specific chaperone C [Mustela putorius furo]) HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31 Identity = 98/317 (30.91%), Postives = 145/317 (45.74%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGF-RARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420 E L + ++Q L K + D+ LFL YD+R+AQE + L++ L + R P+KRF+F + R + S TK P A GFS+ L H +D+LL DL++CTI L + +RL C LLCGPV V+LE C C L +A +QLR+H T DT +++ VTS ++EDC G++FAP+ +YPG ++ +G R+R N W +V DF WL + SP+WS++PEEER+++ Sbjct: 81 EQLEEAAARLQGLQKLLNDSVLFLAAYDLRQAQEALTRLQAILAERRQELQPKKRFAF--------------------------KTRRKDAASGTKVDAGPGAPAAEGVPTSPPPLKEEGGIGSSFVC---GFSNVESQALEKRAEEL-----------------HQRDVLLTDLSKCTIKLYGNPNTVRLAKARSCTLLCGPVSTSVFLEDCSDCVLAVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFEGSGLDRSR---------NNWNDVDDFNWLARDMASPNWSILPEEERMIQ 342
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_022359530.1 (tubulin-specific chaperone C [Enhydra lutris kenyoni]) HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31 Identity = 99/318 (31.13%), Postives = 146/318 (45.91%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTK-QTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGF-RARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420 E L + ++Q L K + D+ LFL YD+R+AQE + L++ L + R P+KRF+F + R + S TK R P+ GFS+ L H +D+LL DL++CTI L + LRL C LLCGPV V+LE C C L +A +QLR+H T DT +++ VTS ++EDC G++FAP+ +YPG ++ +G R+R N W +V DF WL + SP+WS++PEEER+++ Sbjct: 81 EQLEEAAARLQGLQKLLNDSVLFLAAYDLRQAQEALTRLQAILAERRQELQPKKRFAF--------------------------KTRRKDAASGTKVDAGRGAPAAEGVPTSPPPLKEEGGIGSSFVC----GFSNVESQVLEKRAEEL-----------------HQRDVLLTDLSKCTIKLYGNPNTLRLAKARSCTLLCGPVSTSVFLEDCSDCVLAVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFEGSGLDRSR---------NNWNDVDDFNWLARDMASPNWSILPEEERMIQ 342
BLAST of NO12G02940 vs. NCBI_GenBank
Match: EAX04100.1 (tubulin-specific chaperone c [Homo sapiens]) HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31 Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417 E L + ++Q L K I D+ FL YD+R+ QE + L++ L + R P+KRF+F + RG+ SSTK P + + GFS+ L H +D+LL +L+ CT+ L + LRL CKLLCGPV V+LE C C L +A +QLRIH T DT +++ VTS ++EDC G++FAP+ +YP ++ +G N W +V DF WL + SP+WS++PEEER Sbjct: 113 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 372
BLAST of NO12G02940 vs. NCBI_GenBank
Match: NP_003183.1 (tubulin-specific chaperone C [Homo sapiens] >AAB17539.1 cofactor C [Homo sapiens] >AAH20170.1 Tubulin folding cofactor C [Homo sapiens] >AAH17479.1 TBCC protein [Homo sapiens] >AAP35648.1 tubulin-specific chaperone c [Homo sapiens] >AAX42216.1 tubulin-specific chaperone c [synthetic construct] >AAX42217.1 tubulin-specific chaperone c [synthetic construct] >BAG35561.1 unnamed protein product [Homo sapiens] >ADZ16092.1 tubulin folding cofactor C, partial [synthetic construct] >AIC49839.1 TBCC, partial [synthetic construct] >AIC55204.1 TBCC, partial [synthetic construct] >SJX35814.1 unnamed protein product, partial [Human ORFeome Gateway entry vector] >SJX36770.1 unnamed protein product, partial [Human ORFeome Gateway entry vector]) HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31 Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417 E L + ++Q L K I D+ FL YD+R+ QE + L++ L + R P+KRF+F + RG+ SSTK P + + GFS+ L H +D+LL +L+ CT+ L + LRL CKLLCGPV V+LE C C L +A +QLRIH T DT +++ VTS ++EDC G++FAP+ +YP ++ +G N W +V DF WL + SP+WS++PEEER Sbjct: 82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341
BLAST of NO12G02940 vs. NCBI_GenBank
Match: AAP36382.1 (Homo sapiens tubulin-specific chaperone c, partial [synthetic construct] >AAX29672.1 tubulin-specific chaperone c, partial [synthetic construct] >AAX29673.1 tubulin-specific chaperone c, partial [synthetic construct]) HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31 Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417 E L + ++Q L K I D+ FL YD+R+ QE + L++ L + R P+KRF+F + RG+ SSTK P + + GFS+ L H +D+LL +L+ CT+ L + LRL CKLLCGPV V+LE C C L +A +QLRIH T DT +++ VTS ++EDC G++FAP+ +YP ++ +G N W +V DF WL + SP+WS++PEEER Sbjct: 82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341
BLAST of NO12G02940 vs. NCBI_GenBank
Match: Q15814.2 (RecName: Full=Tubulin-specific chaperone C; AltName: Full=Tubulin-folding cofactor C; Short=CFC) HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31 Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0 Query: 105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417 E L + ++Q L K I D+ FL YD+R+ QE + L++ L + R P+KRF+F + RG+ SSTK P + + GFS+ L H +D+LL +L+ CT+ L + LRL CKLLCGPV V+LE C C L +A +QLRIH T DT +++ VTS ++EDC G++FAP+ +YP ++ +G N W +V DF WL + SP+WS++PEEER Sbjct: 82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341 The following BLAST results are available for this feature:
BLAST of NO12G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02940 ID=NO12G02940|Name=NO12G02940|organism=Nannochloropsis oceanica|type=gene|length=1368bpback to top protein sequence of NO12G02940.1 >NO12G02940.1-protein ID=NO12G02940.1-protein|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bpback to top Synonyms
Publications
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