NO12G02940, NO12G02940 (gene) Nannochloropsis oceanica

Overview
NameNO12G02940
Unique NameNO12G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr12:812581..813948 -

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Properties
Property NameValue
DescriptionTubulin-specific chaperone c
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:812581..813948 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007023post-chaperonin tubulin folding pathway
GO:0048856anatomical structure development
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0015631tubulin binding
Vocabulary: INTERPRO
TermDefinition
IPR017901C-CAP_CF_C-like
IPR027684TBCC
IPR012945Tubulin-bd_cofactor_C_dom
IPR031925TBCC_N
IPR006599CARP_motif
Homology
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_005854608.1 (tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526] >EKU21752.1 tubulin-specific chaperone c, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.6 bits (571), Expect = 6.400e-55
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 0
Query:  271 PKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWLKVQRSPHWSVVPEE 415
            PKDLLLRDLTRCT+ LL+PLHFLR ENL DCKLLCGPV GPVYL+ C GCTLY+ASRQLRIH TYDTTLYVH  +GP+IEDCD L F PWAL YPG EEQ+ EAG         GG  NAW+EVKDFKWL+ Q SPHW V+P+E
Sbjct:   14 PKDLLLRDLTRCTVSLLSPLHFLRCENLRDCKLLCGPVAGPVYLQDCIGCTLYVASRQLRIHRTYDTTLYVHTVAGPIIEDCDRLCFGPWALAYPGREEQVEEAGL--------GGTENAWREVKDFKWLRAQASPHWQVLPQE 149          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: CBN78243.1 (putative: Beta-tubulin folding cofactor C [Ectocarpus siliculosus])

HSP 1 Score: 165.2 bits (417), Expect = 4.600e-37
Identity = 106/314 (33.76%), Postives = 140/314 (44.59%), Query Frame = 0
Query:  103 VEESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWLKVQRSPHWSVVPEEER 417
            V E L  L  +V+ L K+ A+A LFL  YD+RRAQEE   L + +E  RA  APRKRF+F                            R + T    K+     P +                        M+G      A                            KD  + DL  C + +L  L  LRL  L  C+++CGPV GP+Y+E C+ C +  A RQLRIH +     YV V SGP+IEDC GL+FAP  L YP ++  L  AG        E    NAW +VKDFKW + Q+SP+W+V+P+ ER
Sbjct:  137 VREELDVLVDRVKGLRKRTAEATLFLTVYDLRRAQEEVGRLWASVESTRAELAPRKRFAFRSKAKAKGRDARRGGGGIPAREEGLARKRVDETGGGEKEA-EGGPGI----------------------RGMKGREVDVSA----------------------EDADKDKDFNVADLDDCKVTILHVLGALRLRRLTSCRVVCGPVRGPIYVEGCRNCVIVTAGRQLRIHESRHVDFYVLVASGPIIEDCSGLRFAPAGLRYPEYQHHLQAAGLE------EDAVTNAWADVKDFKWHRAQQSPNWTVIPDSER 399          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_020012685.1 (tubulin-specific chaperone C [Castor canadensis])

HSP 1 Score: 151.0 bits (380), Expect = 9.000e-33
Identity = 100/316 (31.65%), Postives = 144/316 (45.57%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420
            E L   + ++Q L K + DA LFL  YD+R+ QE  + L++ L + R    P+KRF+F                          + R +   S+T+    P    A                         GFS+     L                        H +D+LL +L  CTI L    + LRL     C++LCGPV   V+LE C+ C L +A +QLR+H T DT +++HVTS  ++EDC G++F+P+  +YPG E+    +G   RGR       N W  V DF WL +   SP+WS++PEEER ME
Sbjct:   82 ERLEEAAARLQGLRKLLNDAVLFLASYDLRQGQEALAQLQAALARRRQELQPKKRFAF--------------------------KARKKEAASATEGDAAPVAPAAEGLLASSLPLKEEEEEGTLDSSRACGFSNLESQVLE-----------------KRGDELHQRDILLNELKDCTIKLYGNPNALRLAKAHGCRVLCGPVSTSVFLEDCRDCVLAVACQQLRVHTTRDTRIFLHVTSRAIVEDCGGIQFSPYTWSYPGIEQDFQGSGL-DRGR-------NNWNTVDDFNWLARDVPSPNWSILPEEERKME 346          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_005359780.1 (PREDICTED: tubulin-specific chaperone C [Microtus ochrogaster])

HSP 1 Score: 147.9 bits (372), Expect = 7.600e-32
Identity = 96/313 (30.67%), Postives = 144/313 (46.01%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417
            E L   + ++Q L K + D+ LFL PYD+R+ QE  + L++ L + R    P+KRF+F                         D       +++   +  P+P +A                         GFS+     L  N                     H +D+LL DLT CT+ L    + LRL     CK+LCGPV   V+LE C  C L +A +QLR+H T DT +++ VTS  ++EDC G++FAP+  +Y G ++   ++G   RGR       N W  + DF WL +   SP+WS++PEE+R
Sbjct:   81 ERLEEAANRLQGLRKLLNDSVLFLAPYDLRQGQEALAQLQAALAERRLELQPKKRFAF--------------------KARKKDAAGATQVDAAPGASSAPSPPLATEEGAPCLSWAC-------------GFSNLESQDLEKNADEL-----------------HQRDILLSDLTNCTVRLRGNPNTLRLAKARSCKVLCGPVSTSVFLEDCCDCVLAVACQQLRVHTTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYQGIDKDFEDSGL-DRGR-------NNWNHIDDFNWLARNVASPNWSILPEEDR 335          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_004739947.1 (PREDICTED: tubulin-specific chaperone C [Mustela putorius furo])

HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31
Identity = 98/317 (30.91%), Postives = 145/317 (45.74%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGF-RARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420
            E L   + ++Q L K + D+ LFL  YD+R+AQE  + L++ L + R    P+KRF+F                          + R +   S TK    P    A                         GFS+     L                        H +D+LL DL++CTI L    + +RL     C LLCGPV   V+LE C  C L +A +QLR+H T DT +++ VTS  ++EDC G++FAP+  +YPG ++    +G  R+R         N W +V DF WL +   SP+WS++PEEER+++
Sbjct:   81 EQLEEAAARLQGLQKLLNDSVLFLAAYDLRQAQEALTRLQAILAERRQELQPKKRFAF--------------------------KTRRKDAASGTKVDAGPGAPAAEGVPTSPPPLKEEGGIGSSFVC---GFSNVESQALEKRAEEL-----------------HQRDVLLTDLSKCTIKLYGNPNTVRLAKARSCTLLCGPVSTSVFLEDCSDCVLAVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFEGSGLDRSR---------NNWNDVDDFNWLARDMASPNWSILPEEERMIQ 342          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: XP_022359530.1 (tubulin-specific chaperone C [Enhydra lutris kenyoni])

HSP 1 Score: 146.7 bits (369), Expect = 1.700e-31
Identity = 99/318 (31.13%), Postives = 146/318 (45.91%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTK-QTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGF-RARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEERVME 420
            E L   + ++Q L K + D+ LFL  YD+R+AQE  + L++ L + R    P+KRF+F                          + R +   S TK    R  P+                           GFS+     L                        H +D+LL DL++CTI L    + LRL     C LLCGPV   V+LE C  C L +A +QLR+H T DT +++ VTS  ++EDC G++FAP+  +YPG ++    +G  R+R         N W +V DF WL +   SP+WS++PEEER+++
Sbjct:   81 EQLEEAAARLQGLQKLLNDSVLFLAAYDLRQAQEALTRLQAILAERRQELQPKKRFAF--------------------------KTRRKDAASGTKVDAGRGAPAAEGVPTSPPPLKEEGGIGSSFVC----GFSNVESQVLEKRAEEL-----------------HQRDVLLTDLSKCTIKLYGNPNTLRLAKARSCTLLCGPVSTSVFLEDCSDCVLAVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFEGSGLDRSR---------NNWNDVDDFNWLARDMASPNWSILPEEERMIQ 342          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: EAX04100.1 (tubulin-specific chaperone c [Homo sapiens])

HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31
Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417
            E L   + ++Q L K I D+  FL  YD+R+ QE  + L++ L + R    P+KRF+F                          + RG+   SSTK      P +                        + GFS+     L                        H +D+LL +L+ CT+ L    + LRL     CKLLCGPV   V+LE C  C L +A +QLRIH T DT +++ VTS  ++EDC G++FAP+  +YP  ++    +G             N W +V DF WL +   SP+WS++PEEER
Sbjct:  113 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 372          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: NP_003183.1 (tubulin-specific chaperone C [Homo sapiens] >AAB17539.1 cofactor C [Homo sapiens] >AAH20170.1 Tubulin folding cofactor C [Homo sapiens] >AAH17479.1 TBCC protein [Homo sapiens] >AAP35648.1 tubulin-specific chaperone c [Homo sapiens] >AAX42216.1 tubulin-specific chaperone c [synthetic construct] >AAX42217.1 tubulin-specific chaperone c [synthetic construct] >BAG35561.1 unnamed protein product [Homo sapiens] >ADZ16092.1 tubulin folding cofactor C, partial [synthetic construct] >AIC49839.1 TBCC, partial [synthetic construct] >AIC55204.1 TBCC, partial [synthetic construct] >SJX35814.1 unnamed protein product, partial [Human ORFeome Gateway entry vector] >SJX36770.1 unnamed protein product, partial [Human ORFeome Gateway entry vector])

HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31
Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417
            E L   + ++Q L K I D+  FL  YD+R+ QE  + L++ L + R    P+KRF+F                          + RG+   SSTK      P +                        + GFS+     L                        H +D+LL +L+ CT+ L    + LRL     CKLLCGPV   V+LE C  C L +A +QLRIH T DT +++ VTS  ++EDC G++FAP+  +YP  ++    +G             N W +V DF WL +   SP+WS++PEEER
Sbjct:   82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: AAP36382.1 (Homo sapiens tubulin-specific chaperone c, partial [synthetic construct] >AAX29672.1 tubulin-specific chaperone c, partial [synthetic construct] >AAX29673.1 tubulin-specific chaperone c, partial [synthetic construct])

HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31
Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417
            E L   + ++Q L K I D+  FL  YD+R+ QE  + L++ L + R    P+KRF+F                          + RG+   SSTK      P +                        + GFS+     L                        H +D+LL +L+ CT+ L    + LRL     CKLLCGPV   V+LE C  C L +A +QLRIH T DT +++ VTS  ++EDC G++FAP+  +YP  ++    +G             N W +V DF WL +   SP+WS++PEEER
Sbjct:   82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341          
BLAST of NO12G02940 vs. NCBI_GenBank
Match: Q15814.2 (RecName: Full=Tubulin-specific chaperone C; AltName: Full=Tubulin-folding cofactor C; Short=CFC)

HSP 1 Score: 146.4 bits (368), Expect = 2.200e-31
Identity = 96/313 (30.67%), Postives = 139/313 (44.41%), Query Frame = 0
Query:  105 ESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKVRAAFAPRKRFSFAXXXXXXXXXXXXXXXXXXXXXXXXDELRGESTNSSTKQTWRPTPSVAXXXXXXXXXXXXXXXXXXXXXXAMEGFSSHSDATLNLNTXXXXXXXXXXXXXXXXXXXSHPKDLLLRDLTRCTIHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL-KVQRSPHWSVVPEEER 417
            E L   + ++Q L K I D+  FL  YD+R+ QE  + L++ L + R    P+KRF+F                          + RG+   SSTK      P +                        + GFS+     L                        H +D+LL +L+ CT+ L    + LRL     CKLLCGPV   V+LE C  C L +A +QLRIH T DT +++ VTS  ++EDC G++FAP+  +YP  ++    +G             N W +V DF WL +   SP+WS++PEEER
Sbjct:   82 ERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAF--------------------------KTRGKDAASSTKVD--AAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASEL-----------------HQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGL--------DRSKNNWNDVDDFNWLARDMASPNWSILPEEER 341          
The following BLAST results are available for this feature:
BLAST of NO12G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854608.16.400e-5572.22tubulin-specific chaperone c, partial [Nannochloro... [more]
CBN78243.14.600e-3733.76putative: Beta-tubulin folding cofactor C [Ectocar... [more]
XP_020012685.19.000e-3331.65tubulin-specific chaperone C [Castor canadensis][more]
XP_005359780.17.600e-3230.67PREDICTED: tubulin-specific chaperone C [Microtus ... [more]
XP_004739947.11.700e-3130.91PREDICTED: tubulin-specific chaperone C [Mustela p... [more]
XP_022359530.11.700e-3131.13tubulin-specific chaperone C [Enhydra lutris kenyo... [more]
EAX04100.12.200e-3130.67tubulin-specific chaperone c [Homo sapiens][more]
NP_003183.12.200e-3130.67tubulin-specific chaperone C [Homo sapiens] >AAB17... [more]
AAP36382.12.200e-3130.67Homo sapiens tubulin-specific chaperone c, partial... [more]
Q15814.22.200e-3130.67RecName: Full=Tubulin-specific chaperone C; AltNam... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010240NSK010240Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02940.1NO12G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529423gene_5467Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100087g22gene4771Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02940.1NO12G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02940 ID=NO12G02940|Name=NO12G02940|organism=Nannochloropsis oceanica|type=gene|length=1368bp
ATGGAACCTCCCATCAAGACTCCACTGCCGCCTCCTACCCCGGAGCCATC
GACACGCCATACTGAAATGCAAGCCCGCTTTCGAGCCCAACAAGAAGCAC
GGATGCAATCCCGAAAGGACAGCAGGGCCAAGGTTCAGCTCGGCAAAGAC
CCTGCGGAATCTGTTGGCGTCTTTTGGACGGAATTGCGGAGGGCACACGA
GGACGTGACGAGTAGGCTGGACAACTTGGCCTTGACCGATACGAGCAGCA
CCAAAATTAGCTGCAGCAGCACCAAAATTAGCTGCAGCAGCAGCAACAAT
AGCACTGTGGAAGAATCTCTTACTTATTTGAGTGGCAAGGTCCAAGCCCT
CGATAAGCAGATCGCCGACGCCGCGTTGTTCTTGCCTCCGTATGACGTCC
GCCGGGCCCAGGAAGAAGCTAGTGCCTTACGGAGCAAACTGGAGAAAGTG
CGCGCAGCCTTCGCACCACGCAAAAGATTTTCGTTTGCTTCTCGGCGGCG
TACAACAGCAGCAGCAACAGCAACAGCAGCAGAAGAGGAAGGAGCGGTGA
ATGGAGGCTCCGACGAACTGCGCGGAGAGAGCACCAACAGCAGCACCAAA
CAAACCTGGCGTCCGACGCCGTCCGTAGCACCAACGTCATCGAAAGCCTC
TCCAAGCACCACTGCCACTACCAGCGACGAATCGTCTGGTCTGACAGCCA
TGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCTC
CTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAT
CATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACCA
TCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGAC
TGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAATG
CCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGTA
CCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGAA
GATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGATG
GGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGGG
AGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGTTG
AAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGGT
GATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGAC
AAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GGAAAGCTGCGATTGTAA
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protein sequence of NO12G02940.1

>NO12G02940.1-protein ID=NO12G02940.1-protein|Name=NO12G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MEPPIKTPLPPPTPEPSTRHTEMQARFRAQQEARMQSRKDSRAKVQLGKD
PAESVGVFWTELRRAHEDVTSRLDNLALTDTSSTKISCSSTKISCSSSNN
STVEESLTYLSGKVQALDKQIADAALFLPPYDVRRAQEEASALRSKLEKV
RAAFAPRKRFSFASRRRTTAAATATAAEEEGAVNGGSDELRGESTNSSTK
QTWRPTPSVAPTSSKASPSTTATTSDESSGLTAMEGFSSHSDATLNLNTL
LSTTTSRSSSNSSSSSIISHPKDLLLRDLTRCTIHLLAPLHFLRLENLID
CKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHCTYDTTLYVHVTSGPVIE
DCDGLKFAPWALTYPGWEEQLVEAGFRARGREGEGGQGNAWQEVKDFKWL
KVQRSPHWSVVPEEERVMEEVVGGGSSDGEGERQREEEEEEEEEEEEEEE
GKLRL*
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