NO12G02890, NO12G02890 (gene) Nannochloropsis oceanica

Overview
NameNO12G02890
Unique NameNO12G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1791
Alignment locationchr12:801342..803132 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-dihydrouridine synthase 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:801342..803132 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
Homology
BLAST of NO12G02890 vs. NCBI_GenBank
Match: EWM25758.1 (trna-dihydrouridine synthase 2 [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 4.900e-141
Identity = 278/450 (61.78%), Postives = 333/450 (74.00%), Query Frame = 0
Query:   46 LQRAIHRLYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLR-----CGTTKDGGKEGATVHEVTTISSSSALSSPVSS---RLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGVVAEKGEGKRMDAGSIGIEGLHHYADDYFGSAKVEQGGVVVAKRREGGKECAGAECLC-SKRQKVRE 487
            L+  I RLY +T+ALAPMVRAGTLPLR LAL YGC+VVY EEIIDRKLMQC+REEN ALGTIDFVT  +  G  G+   E RRLVFQTV +EK  V+FQ+GTRNPEWAV+AA++++HDVAAIDLNMGCPKKFS+QDGMGAALLDNP TA+SL+ ALR A PH P+SCKIRLLD  LP+ KT+AFA+AME AGACALNVH+RTK+DK SDPARWELLRP+V A+ IPV+ANGD+Y +EDVE++ A S CA VMLARPVLYNPS+LRTLR     CG    G K           SS  A+SS  SS    LLPL++VIR YL +C  YESHVSN KYVVLEMIVRRRHP++V+  L PL++ E INV +VS+ KTL AL  LFG+ A           S G+EG+H   D YF + ++E G   + K R+G      +E L   KR+K+R+
Sbjct:   45 LEATIRRLYFNTIALAPMVRAGTLPLRALALSYGCDVVYSEEIIDRKLMQCVREENRALGTIDFVTTGNRKGDSGK---ESRRLVFQTVPQEKPRVVFQLGTRNPEWAVEAARLVQHDVAAIDLNMGCPKKFSIQDGMGAALLDNPATAASLVKALRQALPHKPVSCKIRLLDASLPMTKTLAFARAMEEAGACALNVHLRTKQDKASDPARWELLRPLVAALAIPVIANGDVYRQEDVEQLLAASHCAGVMLARPVLYNPSLLRTLRFVSPSCGRPVPGDK-----------SSEDAISSTGSSPPLPLLPLMDVIRTYLHLCSCYESHVSNVKYVVLEMIVRRRHPEYVRRHLAPLELPENINVASVSKAKTLQALGTLFGIEA---------GASSGLEGVHLCLDSYFDAEQLE-GTKSMVKGRDGEPRANASEELGEGKRRKIRD 470          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: CBN80498.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 302.0 bits (772), Expect = 3.500e-78
Identity = 178/381 (46.72%), Postives = 239/381 (62.73%), Query Frame = 0
Query:   46 LQRAIHRLYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTV-AREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGI-NVNTVSRTKTLHALAELFGVVAE 425
            ++ A  +LY   V LAPMVRAGTLP R LAL+YG + V+ EE+IDR+++  +R ENP LGT+D+V K    G KG          FQT  A E+  +++Q+GT +   A++AA+ +E DVAA+D+NMGCPK+FSLQ GMGAALL  PQ A+ ++  LR     +P+S KIRLL+T     +T+ FA+ ME AGACAL+VH+R   D  +  ARWE LRPVVDAV IPV+ANGD+YTR D+  ++A+SGC++VMLARP L N S+ +        DG                          +LPL EVI+ YLR C RY+S   NAKY V+EM+ +RRHPDH+K   + L +  G   +  V+  KTL  LA L+ V A+
Sbjct:    3 VEDAADQLYRGKVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEK---RGKKGIATP------FQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKRFSLQGGMGAALLKQPQVAADIVGTLRRNL-SVPVSVKIRLLETP---GETVEFARRMEKAGACALSVHVRKVGDTPASKARWEELRPVVDAVNIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNCSIFK-------PDG-------------------------HVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEMLTKRRHPDHLKE-SISLGLPGGAPGMREVTPAKTLGQLARLWDVGAD 337          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: XP_008616554.1 (tRNA-dihydrouridine synthase 2 [Saprolegnia diclina VS20] >EQC29987.1 tRNA-dihydrouridine synthase 2 [Saprolegnia diclina VS20])

HSP 1 Score: 258.1 bits (658), Expect = 5.800e-65
Identity = 150/369 (40.65%), Postives = 215/369 (58.27%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGV 422
            LY + V LAPMVRAGTLPLRLL+L+YG N+VYGEEIID+K+ Q  R  N  LGTID+V+    S            +VF+T A EK+ V+FQ+GT     A++AA+ + +DVA+ID+NMGCPK FS+Q GMG AL+  P+ AS ++  LR    ++P+SCKIR+ D+      TI FAK+ME AGA A+ +H R   ++  D A W+ L  +  A+ +PV+ANGD+YT+ED+ R+RA +GC+ V++AR  L+N S  R           +EG                      LLP  E IR +L+V    ++   N KY +  M+  + +      V+LP D    + V  ++ TK+   +  LFG+
Sbjct:    5 LYENAVCLAPMVRAGTLPLRLLSLRYGANLVYGEEIIDKKIAQTHRVVNDVLGTIDYVSAQGDS------------VVFRTCAEEKDHVVFQIGTPGAVTALKAAETVANDVASIDINMGCPKHFSVQGGMGIALMSKPEVASDIVKTLRRNL-NIPVSCKIRIKDSP---SATIDFAKSMEQAGAAAIAIHCRQPHERPCDDAHWDALPLIPSALNVPVLANGDIYTQEDIARVRAETGCSGVLVARGALHNASCFR-----------QEG----------------------LLPYTENIREFLKVAAETDNVFQNTKYSISRMLPSKVNHLETPSVVLPYD---HVTVPDIAATKSNREMFALFGL 321          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: XP_012205620.1 (hypothetical protein SPRG_11083 [Saprolegnia parasitica CBS 223.65] >KDO23637.1 hypothetical protein SPRG_11083 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 257.3 bits (656), Expect = 9.900e-65
Identity = 152/369 (41.19%), Postives = 212/369 (57.45%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGV 422
            LY + V LAPMVRAGTLPLRLL+L+YG N+VYGEEIID+K+ Q  R  N  LGTID+V+    S            +VF+T A EK  V+FQ+GT     A++AA+ + +DVA+ID+NMGCPK FS+Q GMG AL+  P  AS +I  LR    ++P+SCKIR+ D+      TI FAK ME AGA A+ +H R   ++  D A W+ L  +  A+ +PV+ANGD+YT+ED+ R+RA +GC+ V++AR  L+N S  R           KEG                      LLP  E IR +L+V    ++   N KY +  M+  + +      V+LP D    + V  ++ TK+   +  LFG+
Sbjct:    5 LYENAVCLAPMVRAGTLPLRLLSLRYGANLVYGEEIIDKKIAQTHRVVNDVLGTIDYVSAQGDS------------VVFRTCAEEKNHVVFQIGTPGAVTALKAAETVANDVASIDINMGCPKHFSVQGGMGIALMSKPDVASDIIKTLRRNL-NIPVSCKIRIKDSP---SATIDFAKIMEQAGAAAIAIHCRQPHERPCDDAHWDALPLLPSALNVPVLANGDIYTQEDIARVRAETGCSGVLIARGALHNASCFR-----------KEG----------------------LLPYTENIREFLKVAAETDNVFQNTKYSISRMLPSKVNHLETPSVVLPYD---HVTVPDIAATKSNREMFALFGL 321          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: CCA24064.1 (tRNAdihydrouridine synthase putative [Albugo laibachii Nc14])

HSP 1 Score: 246.5 bits (628), Expect = 1.700e-61
Identity = 143/329 (43.47%), Postives = 197/329 (59.88%), Query Frame = 0
Query:   52 RLYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLL-DTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMI 380
            RLY + V LAPMVRAGTLPLRLL+L+YG ++VY EEIID+K++   R ENP L T+DFV+ ++              +VF+T   EK+ V+FQMGT +P  A++AA+ +  DVAAID+NMGCPK FS+Q GMGAALL  PQ A  +I AL+     +P+SCKIR+L DT+     TI F K ME AGA A+ VH R   ++  DPA W+ ++PVV AV +PV+ANGDL+T+  + + R  +G ++ ++AR  L NPS+ R           KEG                      +LP  EV+  YL++    ++   N KY    M+
Sbjct:    3 RLYENAVCLAPMVRAGTLPLRLLSLRYGADLVYSEEIIDKKIIATERIENPILNTVDFVSVNNRDS-----------VVFRTSKEEKDRVVFQMGTSDPILAIKAAQKVARDVAAIDVNMGCPKHFSIQGGMGAALLQKPQLAFDIIKALKQNL-EIPVSCKIRVLEDTN----ATIEFVKKMEQAGADAIGVHGRQTHERPEDPASWDSIKPVVSAVSVPVLANGDLFTQTAIAKCREQTGLSSFLVARGALSNPSIFR-----------KEG----------------------MLPQSEVVVEYLKLAADTDNVFQNTKYNAARML 282          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: OQR97239.1 (tRNA-dihydrouridine synthase [Achlya hypogyna])

HSP 1 Score: 244.2 bits (622), Expect = 8.600e-61
Identity = 145/370 (39.19%), Postives = 210/370 (56.76%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDT-DLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGV 422
            +Y + V LAPMVRAGTLPLRLL+L+ G ++VYGEEIID+K+    R  N  L TIDFV+ S  S            +VF+T A EK  V+FQ+GT     A++AA+++ +DVA++D+NMGCPK FS+Q GMG AL+  P+ AS +I  L+    ++P+SCKIR+ +T    +   I FAK ME AGA A+ +H R   ++  D A W+ L+ +  A+ +PV+ANGD+YT+ED+ R+RA +GC +V++AR  L N S  R           KEG                      LLP  E I  +LRV    ++   N KY V  M+  + +      V++P      + V  ++ TK+   +  LFG+
Sbjct:    4 IYENAVCLAPMVRAGTLPLRLLSLRNGADLVYGEEIIDKKIAHTHRTVNEVLDTIDFVSSSGDS------------VVFRTCAEEKSKVVFQIGTAASVTALKAAEMVANDVASVDINMGCPKHFSIQGGMGIALMSKPEVASDIIKTLKRNL-NIPVSCKIRIKETPSETVSYQIDFAKGMEQAGAAAIGIHCRQAHERPCDDAHWDALKTIPSALSVPVLANGDIYTQEDIARVRAETGCQSVLIARGALQNASCFR-----------KEG----------------------LLPYTENICDFLRVAAETDNVYQNTKYSVSRMLPSKVNTLEAPSVVVPYG---DVTVADIAATKSNREMFALFGL 324          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: XP_002896129.1 (tRNA-dihydrouridine synthase, putative [Phytophthora infestans T30-4] >EEY53001.1 tRNA-dihydrouridine synthase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 241.5 bits (615), Expect = 5.600e-60
Identity = 131/327 (40.06%), Postives = 196/327 (59.94%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMI 380
            LY + V L+PMVR+GTLPLRLL+L+YG ++VYGEEIID++++  +R  N  +  +DFV+++  S            +VF+T + E   V+FQ+GT +   A++AA+ +  DVAA+D+NMGCPK FS+Q GMGAALL  P+ A  ++  LR    ++P+SCKIRLL     +  T+  A+ +E AGACA+ VHMR   ++  D A W+ L PVV A+ +PV+ANGD++  ED+ ++R +SG ++ ++AR  L NPS+ R           KEG                       LP+ +V+R YL+     ++   N KY V+ MI
Sbjct:    4 LYANKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISAVRVPNDVVNAVDFVSRNGDS------------VVFRTCSEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNL-NIPVSCKIRLLP---EIQDTVDLARRLEDAGACAVGVHMRQTHERPHDKASWDRLAPVVSALSVPVLANGDVFMHEDINKLRKLSGASSFLIARGALANPSIFR-----------KEGR----------------------LPIDQVVREYLKAAAEVDNVFQNTKYNVMRMI 281          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: OQS03142.1 (tRNA-dihydrouridine synthase [Thraustotheca clavata])

HSP 1 Score: 241.5 bits (615), Expect = 5.600e-60
Identity = 143/369 (38.75%), Postives = 213/369 (57.72%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEGINVNTVSRTKTLHALAELFGV 422
            LY + V LAPMVRAGTLPLRLL+L+ G ++VYGEEIID+K+ Q  R EN  L  +DF++ +  S            +VF+T A EK  V+FQ+GT +   A++AA+ I +DVAAID+NMGCPK FS+Q GMG AL+ +P+ A+ ++  LR    ++P+SCKIR+L++      TI FAK +E AGA A+ +H R   ++  D A W+ L+ +  A+ +PV+ANGD+ T++D+ R++A +GC +V++AR  L N S  R       KDG                           L   E IR +L+V    ++   N KY +  M+  +   D V  V++P      + V  ++ TK+   + ELFG+
Sbjct:    5 LYTNAVCLAPMVRAGTLPLRLLSLRNGADLVYGEEIIDKKIAQTHRIENHVLNMVDFISSTGDS------------VVFRTCAEEKARVVFQIGTASAVNALKAAETIANDVAAIDINMGCPKHFSVQGGMGIALMKDPEKATDIVKTLRRNL-NIPVSCKIRILESP---SSTIDFAKGLEQAGAAAIGIHCRQAHERPCDDAHWDALKAIPAALSVPVLANGDILTQQDIARVKAETGCQSVLIARGALQNASCFR-------KDGP--------------------------LHYTENIREFLKVAAETDNVYQNTKYSISRMLPSK--VDEVPQVVVPY---SNVTVPDIAATKSNREMFELFGL 319          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: XP_018597703.1 (PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Scleropages formosus])

HSP 1 Score: 239.6 bits (610), Expect = 2.100e-59
Identity = 134/341 (39.30%), Postives = 203/341 (59.53%), Query Frame = 0
Query:   46 LQRAIHRLYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGD----LYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMIVRR 383
            +Q A    + + +ALAPMVR GTLP+RLLAL YG ++VY EE+ID K++QC R EN  L T+DFV                 R++F+T  RE++ V+FQMGT +PE A+  A+++E+DVAAID+NMGCPK++S + GMGAALL +P    ++++AL +     P++CKIR+L +   + +T+  AK +E  G  A+ VH RTKE++   P   ++++ VV+AV IPV+ANG     + +  D+E  R+ +G ++VMLAR  ++NPS+ R                                    +L L +V+ AY+R  +RYE+H SN KY + +M+  R
Sbjct:    1 MQVARRLRFRNKIALAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMVQCRRVENELLRTVDFVAPD-------------ERVMFRTCRREQDSVVFQMGTADPERALAVARLVENDVAAIDVNMGCPKEYSTKGGMGAALLSDPDKIEAILSAL-VKGVSKPVTCKIRILPS---MEETVQLAKRIEKTGVAAIGVHGRTKEERPQHPVHCDVIKAVVEAVSIPVLANGGSLDLVKSHSDIESFRSATGTSSVMLARAAMWNPSIFR---------------------------------PQGMLSLEQVMDAYIRHAVRYENHASNTKYCLCQMLRER 291          
BLAST of NO12G02890 vs. NCBI_GenBank
Match: XP_008895781.1 (hypothetical protein PPTG_03766 [Phytophthora parasitica INRA-310] >ETI36613.1 hypothetical protein F443_17295 [Phytophthora parasitica P1569] >ETK76847.1 hypothetical protein L915_16823 [Phytophthora parasitica] >ETL30268.1 hypothetical protein L916_16733 [Phytophthora parasitica] >ETL83497.1 hypothetical protein L917_16561 [Phytophthora parasitica] >ETM36707.1 hypothetical protein L914_16656 [Phytophthora parasitica] >ETN18047.1 hypothetical protein PPTG_03766 [Phytophthora parasitica INRA-310] >ETO65342.1 hypothetical protein F444_17331 [Phytophthora parasitica P1976] >ETP06441.1 hypothetical protein F441_17170 [Phytophthora parasitica CJ01A1] >ETP34551.1 hypothetical protein F442_17157 [Phytophthora parasitica P10297])

HSP 1 Score: 239.2 bits (609), Expect = 2.800e-59
Identity = 131/327 (40.06%), Postives = 196/327 (59.94%), Query Frame = 0
Query:   53 LYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREENPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNPEWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITALRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKEDKQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLARPVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPLIEVIRAYLRVCLRYESHVSNAKYVVLEMI 380
            LY + V L+PMVR+GTLPLRLL+L+YG ++VYGEEI+D++++  +R  N  +  +DFV+++  S            +VF+T   E   V+FQ+GT +   A++AA+ +  DVAA+D+NMGCPK FS+Q GMGAALL  P+ A  ++  LR    ++P+SCKIRLL     +  T+  AK +E AGA A+ VHMR   ++  D A W+ L PVV A+ +PV+ANGD++T +D++++R +SG ++ ++AR  L NPS+ R           KEG                       LP+ EV+R YL+     ++   N KY V+ MI
Sbjct:    4 LYENKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNEVVNAVDFVSRNGDS------------VVFRTCPEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMGAALLRKPEVACDIMKTLRRNL-NIPVSCKIRLLP---EIQDTVDLAKRLEDAGAYAVGVHMRQIHERPHDKASWDRLAPVVSALSVPVLANGDVFTHDDIDKLRKISGASSFLVARGALANPSIFR-----------KEGR----------------------LPIDEVVREYLKAAAETDNVFQNTKYNVMRMI 281          
The following BLAST results are available for this feature:
BLAST of NO12G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25758.14.900e-14161.78trna-dihydrouridine synthase 2 [Nannochloropsis ga... [more]
CBN80498.13.500e-7846.72conserved unknown protein [Ectocarpus siliculosus][more]
XP_008616554.15.800e-6540.65tRNA-dihydrouridine synthase 2 [Saprolegnia diclin... [more]
XP_012205620.19.900e-6541.19hypothetical protein SPRG_11083 [Saprolegnia paras... [more]
CCA24064.11.700e-6143.47tRNAdihydrouridine synthase putative [Albugo laiba... [more]
OQR97239.18.600e-6139.19tRNA-dihydrouridine synthase [Achlya hypogyna][more]
XP_002896129.15.600e-6040.06tRNA-dihydrouridine synthase, putative [Phytophtho... [more]
OQS03142.15.600e-6038.75tRNA-dihydrouridine synthase [Thraustotheca clavat... [more]
XP_018597703.12.100e-5939.30PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P... [more]
XP_008895781.12.800e-5940.06hypothetical protein PPTG_03766 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010234NSK010234Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02890.1NO12G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592590gene_5461Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100162g12gene4767Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02890.1NO12G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02890 ID=NO12G02890|Name=NO12G02890|organism=Nannochloropsis oceanica|type=gene|length=1791bp
ATGATCGTGGCGCGCAGAAGGTCTGGCAAGCCCAACCCCTCTCCCATCCC
CTCTCTCGCTTCTCAAGCCGCACCTTCGTCAACTCCGCCAACCCCCGCTT
CCACTGGAAATGTTGCTCCCAGTCCCTCACCCTCCCTGCAACGGGCCATC
CACCGCCTCTATCATGATACGGTTGCCCTCGgtacgtgcctctttatgcc
agtcaacctcctgtcatcaatttcctcatcaaccttccactctacactct
ccaacatacagCCCCTATGGTCCGCGCCGGCACGTTGCCTTTACGCTTGC
TCGCCCTCCAGTATGGGTGCAATGTCGTATACGGCGAAGAAATCATCGAT
AGGAAACTCATGCAATGCATTCGGGAAGAGAACCCGGCCTTGGGCACCAT
CGATTTTGTCACCAAAAGCAGCAGCAGCGGCAGCAAGGGCGAGGGGATAA
CGGAGCTTCGACGCCTTGTTTTCCAAACAGTCGCACGAGAGAAGGAGTGC
GTCATTTTCCAGATGGGTACGCGGAATCCGGAATGGGCTGTGCAGGCTGC
AAAGGTGATCGAGCATGACGTGGCGGCCATTGATTTGAATATGgtgagta
taagaaggtttggaggaggacggacggaggacggacggacggacggacgg
aagagaggacccaccaccaagagtaaagcaaatagcatctgcatccattt
ggtgtctctgtcatttttactgttataaattacgcctcttaactcacctc
ctcttctcccgccctccgccttcattccctcctctcaaatcaaagGGCTG
CCCAAAGAAATTCTCCCTCCAAGACGGCATGGGCGCCGCCCTGCTCGACA
ACCCCCAAACAGCCTCCAGCCTCATCACTGCTCTCCGGCTTGCCTGTCCA
CACCTCCCCATATCCTGTAAGATTCGACTTTTGGACACCGATCTCCCACT
TCCCAAAACAATCGCGTTTGCAAAAGCCATGGAAGCGGCAGGGGCCTGTG
CTTTGAACGTGCACATGAGAACAAAGGAGGACAAGCAATCTGATCCAGCC
CGATGGGAGCTATTGCGGCCAGTCGTTGATGCAGTTCAAATTCCTGTCGT
TGCCAATGGGGATTTGTACACGAGGGAGGACGTGGAGAGGATGAGGGCGA
TGTCGGGGTGCGCGGCGGTGATGCTGGCGAGACCTGTGTTGTACAATCCA
AGTGTGTTGCGGACTTTGAGGTGTGGTACGACAAAGGATGGAGGGAAAGA
GGGCGCTACTGTCCACGAGGTTACGACCATTTCGTCGTCCTCAGCGTTGT
CTTCGCCCGTATCCTCGAGACTCCTTCCATTGATTGAGGTCATTCGTGCC
TATCTCCGGGTCTGTCTGCGATACGAAAGTCATGTCAGCAATGCCAAATA
CGTAGTTCTGGAAATGATCGTCCGTCGTCGCCACCCTGACCATGTCAAGC
CCGTCCTTCTCCCTCTTGACGTCTCTGAGGGGATAAATGTGAATACGGTC
AGTAGAACCAAGACATTGCACGCCTTGGCGGAACTGTTCGGGGTAGTGGC
GGAGAAGGGGGAGGGAAAGAGGATGGATGCCGGAAGCATCGGCATTGAAG
GCTTACATCATTATGCAGATGATTATTTTGGATCGGCGAAGGTAGAGCAG
GGAGGGGTGGTGGTCGCCAAGAGGAGAGAGGGGGGAAAGGAGTGTGCTGG
GGCAGAATGCTTGTGCAGCAAGAGGCAAAAAGTACGAGAGGAATTCAAAG
CAGACTCGGTGGCTCAGATAACATCAGCAGGAGCACAATAG
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protein sequence of NO12G02890.1

>NO12G02890.1-protein ID=NO12G02890.1-protein|Name=NO12G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MIVARRRSGKPNPSPIPSLASQAAPSSTPPTPASTGNVAPSPSPSLQRAI
HRLYHDTVALAPMVRAGTLPLRLLALQYGCNVVYGEEIIDRKLMQCIREE
NPALGTIDFVTKSSSSGSKGEGITELRRLVFQTVAREKECVIFQMGTRNP
EWAVQAAKVIEHDVAAIDLNMGCPKKFSLQDGMGAALLDNPQTASSLITA
LRLACPHLPISCKIRLLDTDLPLPKTIAFAKAMEAAGACALNVHMRTKED
KQSDPARWELLRPVVDAVQIPVVANGDLYTREDVERMRAMSGCAAVMLAR
PVLYNPSVLRTLRCGTTKDGGKEGATVHEVTTISSSSALSSPVSSRLLPL
IEVIRAYLRVCLRYESHVSNAKYVVLEMIVRRRHPDHVKPVLLPLDVSEG
INVNTVSRTKTLHALAELFGVVAEKGEGKRMDAGSIGIEGLHHYADDYFG
SAKVEQGGVVVAKRREGGKECAGAECLCSKRQKVREEFKADSVAQITSAG
AQ*
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Synonyms
Publications