NO12G02820, NO12G02820 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02820 vs. NCBI_GenBank
Match: EWM25751.1 (Conserved oligomeric Golgi complex, subunit 4 [Nannochloropsis gaditana]) HSP 1 Score: 441.4 bits (1134), Expect = 2.700e-120 Identity = 239/342 (69.88%), Postives = 277/342 (80.99%), Query Frame = 0 Query: 22 ADAAPSAVSFTYDDENQELFETLRSELTLVTKEEARVEATLADNLDSLLSVEATKAVPAPDGKQLALQMEGIEKAFATARLTGLTDKVTALAEHVYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEGSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLLKESLDPLVSEAGKLQAVQLLPKIYNVAAGFLQHHLPLVAHGFKQVNADVSLIRLVQRECEDAAIPVIKGLIKARGLTGKCRMVANASPGGIRGEGRTRRMEEQGERKLEGSR 364 A A +A + ++E QEL E+L +EL VTK++A VEA L D LDSLL VEATKAVPAPDGKQLALQM+ +EKAFA R+ LT KV+AL EHVY CQELADKMS SVR+LDERQMRVQ VLA+VEDIINLKTCAEGV RALEE DL ATSYVRQFHSIEG++AKAS HY+ +V++EARLKETV+R+V LAVSRS L+DVFKFCPLLGPLGLA+EGA IYESFAERLLKE LDPL +E KL AVQLLPKIYN AAGFLQ HLPLV+HGFKQV+ADVSLIRLVQRECEDAAIPVI+ ++ +G+ KCR VA AS G +G ++G + G++ Sbjct: 56 ASEAAAAGTGPCNEEFQELLESLHNELDEVTKKKASVEAALGDELDSLLIVEATKAVPAPDGKQLALQMKDLEKAFAPTRVAHLTAKVSALTEHVYGCQELADKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLGATSYVRQFHSIEGASAKASGHYNVLVAAEARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLAAETNKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDNGLDGGAFYARKEGGHRRRGAQ 397
BLAST of NO12G02820 vs. NCBI_GenBank
Match: CBJ31353.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 157.9 bits (398), Expect = 5.900e-35 Identity = 96/243 (39.51%), Postives = 137/243 (56.38%), Query Frame = 0 Query: 104 GLTDKVTALAEHVYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEGSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLLKESLDPLVSEAGKLQAVQLLPKIYNVAAGFLQHHLPLVAHGFKQVNADVSLIRLVQRECEDAAIPVIKGLIKARGLTGKCRMVANASPGGIRGEG 347 GL +K AL + +A+++S SVR+LD+ QMRVQ LALVED+INL+ CAEGV A++ GDL +A +YVR+F I+ A S M + L V+ + + AV + + CPLL PLGLA G ++Y FA R L+ L+ S G L A Q LP IYN +A FL+ +P+ A G DV+L+R+V REC D A V++ ++ + VA+ + G+ G G Sbjct: 123 GLQEKAGALLAQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREIDAGALADSGEMVDMDEAVRGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELE-AGSGDGSLPATQGLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREQS-------VASWAADGVEGWG 357
BLAST of NO12G02820 vs. NCBI_GenBank
Match: PRP87064.1 (oligomeric Golgi complex subunit 4-like [Planoprotostelium fungivorum]) HSP 1 Score: 91.3 bits (225), Expect = 6.800e-15 Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 0 Query: 99 TARLTGLTDKVTALAEHVYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEGSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLLKESLDPL 259 T RLTG + SC LA+ +S V+ LD + RV +V V DI+++K C EGV+RA+E+ D +A SY+++F +I+ S + S + + +E RLKE RK++ A+ N E++ ++C L PLG EEG Y + + D + Sbjct: 82 TRRLTGTIET---------SC-NLAENISRKVKDLDAVRGRVGNVTKRVNDILDVKNCIEGVQRAMEKEDYEEAASYIQRFLNIDPSVFEGSSSAEQLRIAETRLKEIAHRKLEEAIRADNNEEILRYCSLYTPLGEREEGVTRYAHYLRNQANKESDAI 231
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_002961800.2 (conserved oligomeric Golgi complex subunit 4 [Selaginella moellendorffii]) HSP 1 Score: 90.5 bits (223), Expect = 1.200e-14 Identity = 87/300 (29.00%), Postives = 139/300 (46.33%), Query Frame = 0 Query: 54 EEARVEATLADNLDSLLSV--------EATKAVPAPDG--KQLALQMEGIEKAFATARLTG-LTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIE----GSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL----KESLDPLVSEAGKLQAVQLLPKIYNVAAGFLQHHLPLVAHGFKQVNAD---VSLIRLVQRECEDAAIPVIKGLIKARGL 328 E RV A + D++ SL V E+ + DG + L Q + +EK TG + + V A AE V S LA+ +S VR+LD Q RVQ LA +E I++ +C +G ++AL D A V +F +E G ASD + ++ S+ +L+E + ++ AV + V +F L PLGL EEG K Y S+ R + ++ + + V L I+ A ++ + L+ K +N + V IR +Q EC+ ++K ++ RGL Sbjct: 5 ESPRVGAGMLDHIRSLTDVGTMNRMLHESIAYERSIDGELESLLAQRQEVEKKLLGLHRTGEVLEIVRADAEQMLRSVESTCALANLVSGKVRELDLAQSRVQETLARIEAIVDRGSCIDGAQKALASEDYESAARNVERFLQLEERMGGLVDPASDQHVQLLESKRKLEEVIKKRFYAAVDARDHAGVVRFASLFAPLGLHEEGIKAYVSYLRRSVDHRARDGFAAVKETPDQADFVAALNNIFKDIAEAIEENEELL----KSLNGEDGLVYAIRELQEECDSRGSAIVKKYMEFRGL 300
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_004341411.1 (COG4 transport protein [Acanthamoeba castellanii str. Neff] >ELR19326.1 COG4 transport protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 90.1 bits (222), Expect = 1.500e-14 Identity = 67/255 (26.27%), Postives = 123/255 (48.24%), Query Frame = 0 Query: 82 DGKQLALQMEGIEKAFATA-----RLTGLTDKVTALAEHVYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEGSAAKAS----DHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESF--------AERLLKESLDPLVSEAGKLQA--------VQLLPKIYNVAAGFLQHHLPLVAHGFKQVNADVSLIRLVQRECE 312 D + + L E +E AT R+ + + T L + + LA+ +S +R LD + R+Q + + DII++K C GVE A+ + D A S++ ++ +I + A +S + + ++E +LKE V +K++ A+ + ++ +FC L PLGL EEG Y + A+ ++K L P + A ++A L ++Y AG + LV F + V +I+ +Q++C+ Sbjct: 47 DLENILLNAEEVESTLATVEEIPIRIKPVQKETTRLLSTISNTCSLANAVSAKIRDLDSTRERIQLTMNKLHDIIDVKNCVSGVEDAMAKEDYETAASHIGRYLTIGNAVALSSVLEETASNQLKTAENKLKEIVKQKLEQAIRADDQPNIIRFCLLYAPLGLKEEGLTRYSHYLRKLVSTEADYIIKNLLRPKATVAQNIEASGGEQLSYADGLARLYEFIAGIIDEQQSLVEEHFGP-GSMVVVIKNLQQQCD 300
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_009621357.1 (PREDICTED: conserved oligomeric Golgi complex subunit 4 [Nicotiana tomentosiformis] >XP_018632156.1 PREDICTED: conserved oligomeric Golgi complex subunit 4 [Nicotiana tomentosiformis]) HSP 1 Score: 90.1 bits (222), Expect = 1.500e-14 Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 89 QMEGIEKAFATARLTGLTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEG--SAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL 252 Q+ G++K+ T + D V A A+H V S LAD++S VR+LD Q RV L ++ I++ C +GV +AL+ D A +YV+ F ++ + ASD D +++S+ +L+ V RK+ AV + + V +F L PLGL EEG ++Y ++ ++++ Sbjct: 76 QLSGLQKS------TQVLDIVKADADHLLSNVSSTSLLADQVSAKVRQLDLAQSRVNDTLLRIDAIVHRSNCLDGVRKALDSEDFESAANYVQTFLQLDAKYKDSAASDQRDQLLASKKQLEGVVRRKLAAAVDQRDHSTVLRFIRLYSPLGLEEEGLQVYVAYLKKVI 238
BLAST of NO12G02820 vs. NCBI_GenBank
Match: EFJ37060.1 (hypothetical protein SELMODRAFT_230075 [Selaginella moellendorffii]) HSP 1 Score: 89.7 bits (221), Expect = 2.000e-14 Identity = 76/260 (29.23%), Postives = 123/260 (47.31%), Query Frame = 0 Query: 84 KQLALQMEGIEKAFATARLTG-LTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIE----GSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL----KESLDPLVSEAGKLQAVQLLPKIYNVAAGFLQHHLPLVAHGFKQVNAD---VSLIRLVQRECEDAAIPVIKGLIKARGL 328 + L Q + +EK TG + + V A AE V S LA+ +S VR+LD Q RVQ LA +E I++ +C +G ++AL D A V +F +E G ASD + ++ S+ +L+E + ++ AV + V +F L PLGL EEG K Y S+ R + ++ + + V L I+ A ++ + L+ K +N + V IR +Q EC+ ++K ++ RGL Sbjct: 33 ESLLAQRQEVEKKLLGLHRTGEVLEIVRADAEQMLRSVESTCALANLVSGKVRELDLAQSRVQETLARIEAIVDRGSCIDGAQKALASEDYESAARNVERFLQLEERMGGLVDPASDQHVQLLESKRKLEEVIKKRFYAAVDARDHAGVVRFASLFAPLGLHEEGIKAYVSYLRRSVDHRARDGFAAVKETPDQADFVAALNNIFKDIAEAIEENEELL----KSLNGEDGLVYAIRELQEECDSRGSAIVKKYMEFRGL 288
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_016444239.1 (PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Nicotiana tabacum]) HSP 1 Score: 89.7 bits (221), Expect = 2.000e-14 Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 89 QMEGIEKAFATARLTGLTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEG--SAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL 252 Q+ G++K+ T + D V A A+H V S LAD++S VR+LD Q RV L ++ I++ C +GV +AL+ D A +YV+ F ++ + ASD D +++S+ +L+ V RK+ AV + + V +F L PLGL EEG ++Y ++ ++++ Sbjct: 76 QLSGLQKS------TQVLDIVKADADHLLSNVSSTSLLADQVSAKVRQLDLAQSRVNDTLLRIDAIVHRSNCLDGVRKALDSEDFESAANYVQTFLQLDAKYKDSAASDQRDQLLASKKQLEGIVRRKLAAAVDQRDHSTVLRFIRLYSPLGLEEEGLQVYVAYLKKVI 238
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_019255808.1 (PREDICTED: conserved oligomeric Golgi complex subunit 4 [Nicotiana attenuata] >XP_019255809.1 PREDICTED: conserved oligomeric Golgi complex subunit 4 [Nicotiana attenuata] >OIS96983.1 conserved oligomeric golgi complex subunit 4 [Nicotiana attenuata]) HSP 1 Score: 89.0 bits (219), Expect = 3.400e-14 Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 89 QMEGIEKAFATARLTGLTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIEG--SAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL 252 Q+ G++K+ T + D V A A+H V S LAD++S VR+LD Q RV L ++ I++ C +GV +AL+ D A +YV+ F ++ + ASD D +++S+ +L+ V RK+ AV + + V +F L PLGL EEG ++Y ++ ++++ Sbjct: 76 QLSGLQKS------TQVLDIVKADADHLLSNVTSTSLLADQVSAKVRQLDLAQSRVNDTLLRIDAIVHRSNCLDGVRKALDSEDFESAANYVQTFLQLDAKYKDSAASDQRDQLLASKKQLEGIVRRKLAAAVDQRDHSTVLRFIRLYPPLGLEEEGLQVYVAYLKKVI 238
BLAST of NO12G02820 vs. NCBI_GenBank
Match: XP_002964874.2 (conserved oligomeric Golgi complex subunit 4 [Selaginella moellendorffii]) HSP 1 Score: 89.0 bits (219), Expect = 3.400e-14 Identity = 85/300 (28.33%), Postives = 137/300 (45.67%), Query Frame = 0 Query: 54 EEARVEATLADNLDSLLSV--------EATKAVPAPDG--KQLALQMEGIEKAFATARLTG-LTDKVTALAEH----VYSCQELADKMSCSVRKLDERQMRVQHVLALVEDIINLKTCAEGVERALEEGDLPDATSYVRQFHSIE----GSAAKASDHYDFMVSSEARLKETVMRKVQLAVSRSNLEDVFKFCPLLGPLGLAEEGAKIYESFAERLL----KESLDPLVSEAGKLQAVQLLPKIYNVAAGFLQHHLPLVAHGFKQVNADVSLIRLV---QRECEDAAIPVIKGLIKARGL 328 E RV A + D + SL V E+ + DG + L Q + +EK TG + + V A AE V S LA+ +S VR+LD Q RVQ LA +E I++ +C +G ++AL D A V +F +E G ASD + ++ S+ +L+E + ++ AV + V +F L PLGL EEG K Y S+ R + ++ + + V L I+ A ++ + L+ K +N + L+ + Q EC+ ++K ++ RGL Sbjct: 5 ESPRVGAGMLDRIRSLTDVGTMNRMLHESIAYERSIDGELESLLAQRQEVEKKLLGLHRTGEVLEIVRADAEQMLRSVESTCSLANLVSGKVRELDLAQSRVQETLARIEAIVDRGSCIDGAQKALASEDYESAARNVERFLQLEERMGGLVDPASDQHVQLLESKRKLEEVIKKRFYAAVDARDHAGVVRFASLFAPLGLHEEGIKAYVSYLRRSVDHRARDGFAAVKETPDQADFVAALNNIFKDIAEAIEENEELL----KSLNGEDGLVYAILELQEECDSRGSAIVKKYMEFRGL 300 The following BLAST results are available for this feature:
BLAST of NO12G02820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02820 ID=NO12G02820|Name=NO12G02820|organism=Nannochloropsis oceanica|type=gene|length=1092bpback to top protein sequence of NO12G02820.1 >NO12G02820.1-protein ID=NO12G02820.1-protein|Name=NO12G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bpback to top Synonyms
Publications
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