NO12G02680, NO12G02680 (gene) Nannochloropsis oceanica

Overview
NameNO12G02680
Unique NameNO12G02680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length510
Alignment locationchr12:754279..754788 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L32p
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:754279..754788 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR002677Ribosomal_L32p
Homology
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BLAST of NO12G02680 vs. NCBI_GenBank
Match: EWM25761.1 (Ribosomal protein L32p [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 1.700e-32
Identity = 87/174 (50.00%), Postives = 111/174 (63.79%), Query Frame = 0 
Query:    1 MALQQLAVQLRRQSGAWARDMRVIVPATLSLLRPPVVISENLRVPTQQTTYNLGLA-WEGMPPIEKEQEDEMQLEERREEEAGSEGFWDGLLRMAVPKKKVSHRRXXRKLVHYDCENIVHAYPCPACGKPKLRHRLCDDYEKCAAQMPAKYQRPGEA----SAAAAAGGEENHA 170
            MA+Q+L   L+R+   W R+M  +VP  L L++ P ++      P  Q T+ L L+   G+ P+E   +DE+   ER  E+ G   + +  LRMAVPKKKVSHRR  RKLV YDCENIVH Y CPACGKPKLRHRLCDDYE+CAAQ P+KY+RP       +  A   GE N+A
Sbjct:    1 MAIQRLWGHLQREGRKWVREMLSVVPPPLRLVQHPSLVQG--LYPATQPTFPLELSDGYGIIPLE---QDEVGF-ERGSEDLGRSLWEEAFLRMAVPKKKVSHRRQRRKLVRYDCENIVHTYTCPACGKPKLRHRLCDDYERCAAQQPSKYRRPTTGREGPTGRATEAGEGNNA 168
The following BLAST results are available for this feature:
BLAST of NO12G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25761.11.700e-3250.00Ribosomal protein L32p [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010209NSK010209Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02680.1NO12G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592514gene_5439Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100168g8gene4749Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02680.1NO12G02680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02680 ID=NO12G02680|Name=NO12G02680|organism=Nannochloropsis oceanica|type=gene|length=510bp
ATGGCGTTACAGCAGCTAGCGGTGCAGTTGCGGCGGCAGAGTGGGGCGTG
GGCCCGTGATATGCGTGTCATTGTCCCGGCCACCCTCTCGCTCTTGCGGC
CGCCAGTCGTCATATCAGAAAACTTGCGGGTGCCAACTCAACAAACAACG
TACAACTTGGGTTTGGCGTGGGAAGGGATGCCTCCCATCGAGAAGGAGCA
AGAGGATGAGATGCAGCTAGAAGAGCGGAGAGAGGAGGAGGCGGGGTCGG
AGGGGTTCTGGGATGGCTTGCTTCGCATGGCGGTGCCCAAGAAGAAGGTC
TCCCACCGACGAAGGCGCCGCAAGCTGGTGCATTATGACTGTGAGAATAT
TGTCCACGCCTACCCGTGTCCCGCGTGTGGCAAGCCCAAGCTCCGTCATC
GATTGTGTGACGATTACGAAAAGTGCGCTGCTCAAATGCCGGCGAAGTAC
CAGAGACCCGGCGAAGCCTCGGCGGCTGCGGCCGCAGGAGGAGAGGAGAA
TCATGCGTAG
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protein sequence of NO12G02680.1

>NO12G02680.1-protein ID=NO12G02680.1-protein|Name=NO12G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MALQQLAVQLRRQSGAWARDMRVIVPATLSLLRPPVVISENLRVPTQQTT
YNLGLAWEGMPPIEKEQEDEMQLEERREEEAGSEGFWDGLLRMAVPKKKV
SHRRRRRKLVHYDCENIVHAYPCPACGKPKLRHRLCDDYEKCAAQMPAKY
QRPGEASAAAAAGGEENHA*
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Synonyms
Publications