NO12G02640, NO12G02640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02640 vs. NCBI_GenBank
Match: EWM25759.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 532.3 bits (1370), Expect = 9.600e-148 Identity = 262/302 (86.75%), Postives = 284/302 (94.04%), Query Frame = 0 Query: 1 MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTANNYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEWAAAQ 303 MKTAVLF++GL+GAQAFL PNA +PA T+MEA K+GK AKA K TANNYLKEVEPG GPLGKWYVR+DPTLSTALPWVT+PEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAM+ATLGMVTPELVQAP+GF+GFKFAPEFSELNAIKALSAVPTLGL+QI+LAI+F+EVATF+KVYNERFT+EDNL+PLER KVVQGRF DLSGAAKTQAKAGVN FGNAVDVGFQDPE FVPGDLGFDP+GF DNG+NPDYALAEIKHARLAMLGAAGMLIQEFLQPKGIL+QT EWA +Q Sbjct: 1 MKTAVLFLSGLVGAQAFLTPNARVPAATKMEAIKAGK--GAKAGKAATANNYLKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILSQTVEWAQSQ 300
BLAST of NO12G02640 vs. NCBI_GenBank
Match: CEM25114.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 275.0 bits (702), Expect = 2.800e-70 Identity = 152/306 (49.67%), Postives = 201/306 (65.69%), Query Frame = 0 Query: 1 MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTAN--NYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYE-DNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQP-KGILTQTAEWAAAQ 303 M+ V+FV L+ QA L M+A G+ A K A + + +Y ++ EPGVGPLG+WYVR+DP +S ALPWV++P IGDG+LVGDFGFDPFGLSK+ ++ WLRNAELKHGR+ M+A++G++ PELVQ P GF+G F P FSEL+ KAL+A+P G++QI++AIA IE+ T +YN + +L+ ER V G L+G A A + G D + VPGDLG+DPLG ADNG+ D+ALAEIKHARLAM+G GM++Q F++P K IL QT EWA Q Sbjct: 1 MRAIVVFVGLLVACQAMDKSAFQL----TMQARAKGQKKAVKKAPVRGVDFPDYTRQPEPGVGPLGQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSKLVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELTTAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGG----AFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWAKGQ 298
BLAST of NO12G02640 vs. NCBI_GenBank
Match: CBJ30554.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 240.4 bits (612), Expect = 7.500e-60 Identity = 137/302 (45.36%), Postives = 180/302 (59.60%), Query Frame = 0 Query: 1 MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTANNYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPK-GILTQTAEWAA 301 MK+AV+ + A AF+AP+ +++ A + EV G W+ D T S ALPW KP IGDG +VGD GFDP L+ D+ WLR AELKHGR+ M+A +GMV PELVQ P GF GF+FAPEF+++NA ALS+VP LGL+QI++ + IEVA+F E++ YED+L+ LE G+ L+GAAK + D F+D +PGDLGFDPLG A NG+NPDYALAE+KHARLAM+G GM +Q+ + P G+L Q WA+ Sbjct: 1 MKSAVMAAACVSSASAFVAPSLV----------------SSRVASSAPKTTMMAEVP------GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAK------IAPVTENKDQVFED--TVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272
BLAST of NO12G02640 vs. NCBI_GenBank
Match: CEM12879.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 231.9 bits (590), Expect = 2.700e-57 Identity = 129/258 (50.00%), Postives = 164/258 (63.57%), Query Frame = 0 Query: 51 NYLKEVEPGVGPLGKW------YVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYE-DNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQP-KGILTQTAEWAA 301 +Y ++ PG W +R +S ALPWV KP+IGDG+LVGDFGFDP GLSKI DV +LRNAELKHGRL M+A +G++ PELVQ P+GF G +F P FSE+N KAL A+P GL QIL+AIA IE+ T +++ ++S ER V G L+G+A+ Q + + GN V + + VPGDLGFDPLG AD G+ D+ALAEIKH RLAML GML+Q +P KGIL T +W A Sbjct: 23 DYTRQPSPGGEGQKVWERLDVPQIRVPSDVSLALPWVAKPQIGDGTLVGDFGFDPLGLSKIADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELNTAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQ----LASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDWLA 276
BLAST of NO12G02640 vs. NCBI_GenBank
Match: XP_005821740.1 (light-harvesting Chl a protein 2 [Guillardia theta CCMP2712] >CAM33405.1 light harvesting complex protein 2 precursor [Guillardia theta] >EKX34760.1 light-harvesting Chl a protein 2 [Guillardia theta CCMP2712]) HSP 1 Score: 122.1 bits (305), Expect = 3.000e-24 Identity = 83/229 (36.24%), Postives = 107/229 (46.72%), Query Frame = 0 Query: 75 STALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGF-ADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEWAAAQ 303 S A+P++++P DG++ GD GFDP G S FD+ WLR AELKHGR+ M+ TLG + E Q P P F E I+A VPT GL QI + IE+ + +SP GD+ F D A PGDLGFDPL +D + LAE+KH RLAM+G GML Q+ L + L Q A + Q Sbjct: 40 SYAVPFLSRPPALDGTMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGTLGFLVQEKFQLP--------LPGFGEKLPIEAFFTVPTGGLWQIFFTLGAIEI----------LSNNGRISP-----------GDM----------------------FADGRA--PGDLGFDPLNLSSDESALRRFELAELKHGRLAMIGLGGMLHQQLLTKQPTLEQLANFQPLQ 215
BLAST of NO12G02640 vs. NCBI_GenBank
Match: AAB39488.1 (light-harvesting complex I polypeptide [Porphyridium purpureum]) HSP 1 Score: 119.8 bits (299), Expect = 1.500e-23 Identity = 77/226 (34.07%), Postives = 111/226 (49.12%), Query Frame = 0 Query: 74 LSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPEL-----VQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQ 295 +S ++P++ KP+ DGS+ GD GFDP G S +DV +LR AELKHGR+ M+A LG + PE+ + +P G+ F+ELN +KA+ A+PT GL QI+L + +E ++ KV+ + KT A PGD FDPLG +P L+E+K+ RLAM+ GM+ Q L + IL Q Sbjct: 43 MSKSIPFLEKPKNLDGSMAGDVGFDPLGFSDKWDVKFLREAELKHGRICMLAALGFIYPEIMGGKSIPSPEGY--------FTELNPLKAVKAIPTAGLLQIVLFVMVLEAISWNKVFMD----------------------------KTSA----------------------PGDFKFDPLGLK----SPKMELSEVKNGRLAMIAVGGMIHQVLLTKQPILAQ 206
BLAST of NO12G02640 vs. NCBI_GenBank
Match: CEM35487.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 116.3 bits (290), Expect = 1.600e-22 Identity = 79/231 (34.20%), Postives = 111/231 (48.05%), Query Frame = 0 Query: 70 EDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQP-KGILTQTAEWA 300 +D S ALP+ KP+ +G LVGD GFDPFG + D+ +R ELKHGR+ M+ATLG+ LVQ+ +++ F N ++A PTLG+ Q+LL I+ IE YN F GR +PGD GFDPL + G+ ++ L E+KH RLAM+G GM++Q+ L+P + I+ T WA Sbjct: 45 QDIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQDLARMREVELKHGRVCMLATLGV----LVQST-----YRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIE------YYNGNFV---------------GR---------------------------------IPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212
BLAST of NO12G02640 vs. NCBI_GenBank
Match: AAB39489.1 (light-harvesting complex I polypeptide [Porphyridium purpureum]) HSP 1 Score: 114.4 bits (285), Expect = 6.200e-22 Identity = 79/225 (35.11%), Postives = 110/225 (48.89%), Query Frame = 0 Query: 75 STALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFA-DNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEW 299 S A+P++ P DG+LVGD GFDP GLS DV +LR AELKHGR+AM+A LG V E++ AP K + F+E + A+ VP G QI+ AI+ +E+ TF + Y+ G+A+ PG+ GFDPLG D V YAL+E+K+ RLAM+ IQ+ + KG++ Q E+ Sbjct: 33 SKAIPFLEAPAKLDGTLVGDVGFDPLGLSATLDVKYLRAAELKHGRIAMLAALGFVVQEIL-AP------KQSGPFTEPDPFLAIYKVPVEGWYQIIAAISLVELVTFKENYD--------------------------GSAE-------------------------PGNFGFDPLGLGKDKSVFDKYALSELKNGRLAMIAWTAFAIQQIVTGKGVIKQLMEF 199
BLAST of NO12G02640 vs. NCBI_GenBank
Match: XP_005710084.1 (Light-harvesting complex I polypeptide [Chondrus crispus] >CDF39790.1 Light-harvesting complex I polypeptide [Chondrus crispus]) HSP 1 Score: 113.2 bits (282), Expect = 1.400e-21 Identity = 78/220 (35.45%), Postives = 100/220 (45.45%), Query Frame = 0 Query: 75 STALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQ 295 S A+P++ P DGS +GD GFDP LS D ++ ELK+GR+AM+AT+GM+ E V P+ P F+E N IKA+ AVP G QIL+AI IE+ATF K Y SGA DLGFDPLG G + L E+K+ RLAML + G + Q K I+ Q Sbjct: 36 SRAIPFLEAPSKLDGSRIGDSGFDPLYLSDYLDQDYAAAGELKNGRVAMLATVGMLVQEFVHLPN--------PMFAEANPIKAIYAVPVEGWVQILVAITIIELATFKKTYE-------------------------SGA-----------------------------DLGFDPLGMGSKGNMEELKLKELKNGRLAMLASIGFIFQTITTGKPIIAQ 193
BLAST of NO12G02640 vs. NCBI_GenBank
Match: CAM33407.1 (light harvesting complex protein 4, partial [Guillardia theta]) HSP 1 Score: 111.3 bits (277), Expect = 5.300e-21 Identity = 72/225 (32.00%), Postives = 105/225 (46.67%), Query Frame = 0 Query: 75 STALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADN-GVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEW 299 S A+P++++PE DGS+ GD GFDP G+S FD+ W+R AELKHGR+ M+A G + E++ P FS+ A+ A ++ P G+ IL+AI IE+ + N F F +P A VPGDLGFDPL +N Y L+E+ H R AM+G +G++ Q + + I+ W Sbjct: 41 SKAMPFLSQPEKLDGSMPGDVGFDPLGISTYFDLKWMREAELKHGRICMLAWTGCLVQEVIHLP--------GEAFSKKLALDAWASAPRGGMISILVAIGLIEMIS-------------------------------------------NRFQLTATDMFANP-ARVPGDLGFDPLSLGNNPATRAKYELSEVIHGRAAMMGFSGVIHQMIVTKQPIIYSLLHW 213 The following BLAST results are available for this feature:
BLAST of NO12G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02640 ID=NO12G02640|Name=NO12G02640|organism=Nannochloropsis oceanica|type=gene|length=2254bpback to top protein sequence of NO12G02640.1 >NO12G02640.1-protein ID=NO12G02640.1-protein|Name=NO12G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bpback to top Synonyms
Publications
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