NO12G02600, NO12G02600 (gene) Nannochloropsis oceanica

Overview
NameNO12G02600
Unique NameNO12G02600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2472
Alignment locationchr12:738587..741058 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:738587..741058 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G02600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010198NSK010198Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02600.1NO12G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02600.1NO12G02600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02600 ID=NO12G02600|Name=NO12G02600|organism=Nannochloropsis oceanica|type=gene|length=2472bp
ATGTCTCGGGCTCACTTCCCCTATTCCCGCCTGTTGCCCCGTCTCGGTCA
GCTCACGACTCAACACCCCCCATTTTGTCCATACACACCTCAGCAGCAGC
TGCTCTGCCCGATGACCACACTCGATTATGTCACCGGTGCGGCAGGAACC
GAGGACAAAAAGATACAGGGCGTAGGAGACCCTCGCATCATCACCACTAG
CAGTGCTAGCAAGAGCCACCATCCGATTTCGCCCAGGAGCGCCTCCTCCT
TCCGTCCAGCATCGTCGTATGCCTCCTCCCCCTCCTCGTCCTCATCCGTC
TCCTCGAAACGAAGCAGTTCCAGCAGCAGCAAGCCCATTACCTATGGCAC
GTCGACTTTGCTGCCGCCATCTGTGCTCCCTCCCGAATACCTGCATGATA
TGCGGGAGACCATCCGGCAACGCCTGGAGGCCATGCCGGCAGATCGGGAA
ACTGACCTGGTGGCCTTTGCTGAATGGGTTTCCCTGTTCGTCGGGCGCAC
TCTGACTAGCCACCGAACAGGTCTGTTGCTGCCCCCCACGGTGGCCTCGT
CCAAGGCCATTTGCAGCAGCAGGGGGAAAAGTTGTGCAGCTGGCGATGAT
TCGGAGAAAACGGAGGAGCGTCGGCAACGGCGCAAGACGGAGACTGCGGC
AGCGGCGGCGGCGCAGCAAGACGATGAACACATGTTTGTAGTGGGACAGG
GCTATTCTCGTCCCGCGCCCAATTCGCCTTCGTCCTACTCCACTTCGTCT
GCCGAGAGCTGTGTTGACACCACCACTGTCGGCAGTGGGATGCACCCTGA
AAGTGAGCAGGGAGATGAGCAGCAGCAGCAGCAGCAGTCTGCCGTCGCGG
ATGTTGCAGTAGTCTCGGCCGGTGCAGTTACTGGTGCCGGCACATCCCCC
AGGCCGAAGGTTTCCGGCAACCCGAGCGACTTGGAACTCATATCCATTCT
TTTGGATTTCTCCAGTAAGGCCAAGGCCACAGCACCGCAACGAAAAGCCA
CGCCCATGCCCGGGTCCATCTCCTCTGACTCATCTTCTCCCTCCTCCATC
GTGTCGCCCAGAAAGACCAAGAAGAAAGCCAGCCCTCTGTTACCTATTCC
CTCCCGCCACGAAACGCCGCATCATTCCTCGGTGCTGCTAAACACAGCCG
CTCAAGCACCTGCCGTAATCCACAACAGTTCGGCCACCGGCCAGTCCTCC
CCTTCTCCTCTTCCCTCGACGACGGCAGATACGCATCAGTCCTCTCATGT
TAACATGTCGATGGCGCTGCACAAGCCGTCGATTCCTATGCCACTTCATT
CTTCGTCGTCTTTCTCTTCCCCTCCCTCTTCCTCCCCCTCACCCTCTTCC
TCGCTGTCTCTTCCGCTGCCAGATCAGAAGACGACAGGCGATGCCACATC
CCCTCATCCCTCCTCTCACCTTAAACAGCAACCCCAGTTCATGGCCTCAT
CCTCATCTTCATCCTCTCCTACTCTTCCTCCTCCGCCACCTCCCTCGTAC
GCCTACTTCATGCAAGCCGGCTGCTCCCGCGAAGGAATATCTGCCGGGAA
CTGGACTTACTTCCACGGTGCCGGACTAAAAGGCCAACCCCACACAAACC
TCTTCATGGGACAGCTACTCCGCATCTCCGGCGTGCCTTCCAAGACGCAA
ACAGTCGTGGCAGGCATCGTCCGGTACAACAAAGACACGACCTGCAACGC
CGCCCTAGTCTTGGACATAGCCGAAAGTGCCTTTATCCTCACGCCTATTG
CCCCGCTTCACGCTCTTCTCACCGGAAAGTACCTTGAAGAGGAGGCTCGC
TTGACCATCATGTCTAGACTTATCTCTCAATGGCTCAATTGTCCAGCCCG
GAAGAGTGAGGCCTGGTCTCCCTCTGCCGCTTCTTCTGCCTCTTACCCCA
CGCCGTCGACAGGGTCGATAGAATCCGAAGCATCAGCAGCATCCGCAACA
TCAGTAGGAGCTTCGGTCAGGAATATGAGAACAGGAAGGCCAAAGCCAGC
TATTGAGACTTCAGCCTTGTCCCCGATAGATGTGGCAGCAGGAGGAGTTG
GAGGAGGAGGAAGAGGAGGAACACCAGCAGCGGCAGCAGTGCCTTATCCC
CCCCTTCGAGCACCCTTCCCTCCGGGTCCGACTGATTTGGTCCCCCCTCC
CCATGCAGCGCCTAAGAAAGTCGTGCCCCCTCCTCCGTCCCCGCGGCCTT
TTGCAGTGGTCGTCCCTCACCCACAGCGCTTTTCCCACCATCAACACTTC
CCTCAGCACCAACAGCAGCAGCAGCAGCAGTATCCATTGTCTGCCCCTGT
CCATCATCAACTCCAGCAGCAGCAGCAGCAGCAGCACACCCATCGGCTGC
ATCCCCAGCACCAGCCCTACTCCCATTCGTCCTACATGCATCAACAGCAG
AGTGTGTTCCAGCAGCAGCAGCAGCAGCAACAACAACAACGGCAGCAGCA
CGCTCCTCTCGCGCGCGCTTAA
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protein sequence of NO12G02600.1

>NO12G02600.1-protein ID=NO12G02600.1-protein|Name=NO12G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=824bp
MSRAHFPYSRLLPRLGQLTTQHPPFCPYTPQQQLLCPMTTLDYVTGAAGT
EDKKIQGVGDPRIITTSSASKSHHPISPRSASSFRPASSYASSPSSSSSV
SSKRSSSSSSKPITYGTSTLLPPSVLPPEYLHDMRETIRQRLEAMPADRE
TDLVAFAEWVSLFVGRTLTSHRTGLLLPPTVASSKAICSSRGKSCAAGDD
SEKTEERRQRRKTETAAAAAAQQDDEHMFVVGQGYSRPAPNSPSSYSTSS
AESCVDTTTVGSGMHPESEQGDEQQQQQQSAVADVAVVSAGAVTGAGTSP
RPKVSGNPSDLELISILLDFSSKAKATAPQRKATPMPGSISSDSSSPSSI
VSPRKTKKKASPLLPIPSRHETPHHSSVLLNTAAQAPAVIHNSSATGQSS
PSPLPSTTADTHQSSHVNMSMALHKPSIPMPLHSSSSFSSPPSSSPSPSS
SLSLPLPDQKTTGDATSPHPSSHLKQQPQFMASSSSSSSPTLPPPPPPSY
AYFMQAGCSREGISAGNWTYFHGAGLKGQPHTNLFMGQLLRISGVPSKTQ
TVVAGIVRYNKDTTCNAALVLDIAESAFILTPIAPLHALLTGKYLEEEAR
LTIMSRLISQWLNCPARKSEAWSPSAASSASYPTPSTGSIESEASAASAT
SVGASVRNMRTGRPKPAIETSALSPIDVAAGGVGGGGRGGTPAAAAVPYP
PLRAPFPPGPTDLVPPPHAAPKKVVPPPPSPRPFAVVVPHPQRFSHHQHF
PQHQQQQQQQYPLSAPVHHQLQQQQQQQHTHRLHPQHQPYSHSSYMHQQQ
SVFQQQQQQQQQQRQQHAPLARA*
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Synonyms
Publications