NO12G02570, NO12G02570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_004981003.1 (probable ADP-ribosylation factor GTPase-activating protein AGD9 [Setaria italica] >KQK86119.1 hypothetical protein SETIT_035925mg [Setaria italica]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 79/136 (58.09%), Postives = 101/136 (74.26%), Query Frame = 0 Query: 4 FVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPAS 140 F + +D+ A F+R+K +PEN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHITFVRS +LD WTP QL M GGN +A FF++HG T GGKVE+KY+SRAAELY+ LSK VA +D +AL P S Sbjct: 3 FDSFTDKNAVFRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQILSKEVAKSATND-NALPSSPVS 137
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_009617377.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nicotiana tomentosiformis] >XP_016462440.1 PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nicotiana tabacum]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 101/233 (43.35%), Postives = 143/233 (61.37%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDREEAAASPPAQQQEL-----EPVEVVAPTSP---TPAHAPMLPPAPVMIKQEP-RPVGRLSTNSSPRDASNI 230 +D+ A F+++K +P+N++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL M GGN +A FF++HG T GGKVE+KY+SRAAELYK LSK VA DA LPAS A A+ G ++ S P K+ + +EE ASP A Q + +P+ P A P+ + Q+P P ++S+++S +AS + Sbjct: 7 TDKNAVFRKLKAKPDNKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMYFGGNNRAQVFFKQHGWTDGGKVEAKYTSRAAELYKQLLSKEVAKSKAEDAG----LPASPFASQAVQSTNGFSDVKTSEAP-KETSSFKEETPASPKASQSVVTTSIRKPIGAKKSGKPGGGLGARKLTKKPSESLYDQKPEEPPVQVSSSNSTSNASTV 234
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_009791287.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nicotiana sylvestris] >XP_016446005.1 PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nicotiana tabacum]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDREEAAASPPAQQQEL-----EPVEVVAPTSP---TPAHAPMLPPAPVMIKQEP-RPVGRLSTNSSPRDASNI 230 +D+ A F+++K +P+N++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL M GGN +A FF++HG T GGKVE+KY+SRAAELYK LSK VA DA LPAS A + G + S P K+ + +EE ASP A Q + +P+ P A P+ + Q+P P ++S+++S DAS I Sbjct: 7 TDKNAVFRKLKAKPDNKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMYFGGNNRAQVFFKQHGWTDGGKVEAKYTSRAAELYKQLLSKEVAKSKAEDAG----LPASPVASQGVQSTNGFFEVKTSEAP-KETSSFKEETPASPKASQSVVTTSIRKPIGAKKSGKPGGGLGARKLTKKPSESLYDQKPEEPPVQVSSSNSTSDASTI 234
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_006838593.2 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Amborella trichopoda]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 88/175 (50.29%), Postives = 119/175 (68.00%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSD-ASALEPL--PASETAVAAIGCGLDNMMLSYQPNKDPAIDREEA---AASPPA 177 +D+ A F+++K R EN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL M GGN +A FF++HG T GGK+E+KY+SRAAELY+ LSK VA + D S PL PA++T GL ++ L+ ++ A D+ EA ASP A Sbjct: 7 TDKNAIFRKLKSRSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSLTEDPTSPRSPLASPANQTV-----NGLSHVKLTGTSKENEATDKHEAPEVTASPKA 176
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_013737278.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X2 [Brassica napus] >XP_013737279.1 probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X1 [Brassica napus]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 84/177 (47.46%), Postives = 120/177 (67.80%), Query Frame = 0 Query: 1 MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQ-PNKDPAIDREEAAASPPA 177 MS +D+ A F+++K + +N+VCFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM GGN +A FF++HG T GGK+E+KY+SRAA+LY+ L+K VA + DA+ LP+S A G+ + + + P K+ + EA +SP A Sbjct: 1 MSSSDNLTDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAI--ALPSSPLAAEGSN-GVSSFSVKEELPPKESFTVKNEATSSPKA 174
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_021828046.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Prunus avium]) HSP 1 Score: 166.4 bits (420), Expect = 2.200e-37 Identity = 84/170 (49.41%), Postives = 119/170 (70.00%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQPNKDPAIDREEA--AASPP 176 +D+ A F+++K + EN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM GGN +A FF++HG T GGK+E+KY+SRAA+LY+ LSK VA M +A AS++ A+ GL ++ S P K+ +I R+E ++PP Sbjct: 7 NDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDSWTPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAEEAGLPSSPVASQSGQAS--NGLPDVKTSEAP-KETSIARKETPEVSAPP 173
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_024172704.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Rosa chinensis] >PRQ18772.1 putative Arf GTPase activating protein [Rosa chinensis]) HSP 1 Score: 166.4 bits (420), Expect = 2.200e-37 Identity = 89/178 (50.00%), Postives = 115/178 (64.61%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLP-ASETAVAAIGCGLDNMMLSYQPNKDPAIDREEAAASPPAQQQELEPV 185 +D+ A FK++K + EN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM GGN +A FF++HG T GGK+E+KY+SRAAELY+ LSK VA M DA L P P AS++ A+ G P I EA P +QE V Sbjct: 7 NDKNAVFKKLKSKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRTMTFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEDA-GLPPSPVASQSGQASNGL--------------PDIKTSEAIKEKPIARQETPEV 169
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_007210512.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Prunus persica] >ONI06027.1 hypothetical protein PRUPE_5G035300 [Prunus persica]) HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37 Identity = 81/168 (48.21%), Postives = 113/168 (67.26%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQPNKDPAIDREEAAASPP 176 +D+ A F+++K + EN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM GGN +A FF++HG T GGK+E+KY+SRAA+LY+ LSK VA M +A AS++ A+ GL ++ S P + +E S P Sbjct: 7 NDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDSWTPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQMLSKEVAKSMAEEAGLPSSPVASQSGQAS--NGLPDVKTSEAPKETSLARKETPEVSAP 172
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_006366246.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Solanum tuberosum]) HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37 Identity = 92/194 (47.42%), Postives = 124/194 (63.92%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASAL-EPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDRE--EAAASPPAQQQELEPVE--VVAPTSPTP 195 +D+ A F+++K + EN++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P QL M GGN +A FF++HG T GGK+E+KY+SRAAELYK LSK VA ++ A LPAS A A+ G N+ S P + + E E +ASP A Q ++ +VA S P Sbjct: 7 TDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPDQLKMMYFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQLLSKEVAKSKAEESKAQGAGLPASPVASQAVQTTNGFSNIKTSEAPKETSSFKDETPEVSASPKASQSVYTTIKKPIVAKKSGKP 200
BLAST of NO12G02570 vs. NCBI_GenBank
Match: NP_001130507.1 (putative ARF GTPase-activating domain family protein [Zea mays] >ACF78752.1 unknown [Zea mays] >ACN29216.1 unknown [Zea mays] >ONM11673.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays] >ONM11674.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays] >ONM11676.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays] >ONM11678.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays]) HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37 Identity = 78/139 (56.12%), Postives = 101/139 (72.66%), Query Frame = 0 Query: 4 FVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETA 143 F +D+ A F+R+K +PEN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHITFVRS +LD WTP QL M GGN +A FF++HG T GGKVE+KY+SRAAELY+ L+K VA +D +AL P + A Sbjct: 5 FDAYTDKNAVFRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAAHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLTKEVAKSATTD-NALPSSPVASEA 142 The following BLAST results are available for this feature:
BLAST of NO12G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02570 ID=NO12G02570|Name=NO12G02570|organism=Nannochloropsis oceanica|type=gene|length=1605bpback to top protein sequence of NO12G02570.1 >NO12G02570.1-protein ID=NO12G02570.1-protein|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bpback to top Synonyms
Publications
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