NO12G02570, NO12G02570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02570 vs. NCBI_GenBank
Match: EWM25788.1 (adp-ribosylation factor gtpase-activating protein agd8 [Nannochloropsis gaditana]) HSP 1 Score: 478.0 bits (1229), Expect = 3.400e-131 Identity = 316/521 (60.65%), Postives = 360/521 (69.10%), Query Frame = 0 Query: 1 MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQPNKD--------------PAIDREEAAASPP-----AQQQELEPVEVVAPTSPTPAHAPM-LPPAPVMIKQEPRPVGRLSTNSSPRDASNILAVGAADLQTTTT-----------------FAATAAGNSSGMFRNPPRKTTAXXXXXXXXXXXXXXXXXXXXSSSDFGMGTFEDTAKQAAEXXXXXXXXXXXXXXXXRDRKARDLNVFMGNSSNSAGGGRQDWAAPLPASPVIQEYRGRMEGGKQEPGPTVSTGPLAARFSTAKGIGSDQLFGNDDETPDMRYERQTKLAGMSGARAISSDMYFGDGQEGGMGGGGGYNPESPNVDELAAQAADKLRNVGQGMAKGVGLLKDASCNFFDSFR 485 MSK+VT +DR+AAFKRMK RPENQVCFDCPTR PTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGN AAQFFR+HGVT GGKVE KYSSRAAELYK HLSKLVADK++ DA+ALEP P ++T V A+GCGLDN+MLSYQ +D I REE SPP A +QE E VA T AP+ PPA V ++Q+ R SP N L GA +L+ +T +G SGMF+ PRK+T XXXXXXXXXXXXXX XXXXXXXXXXXXXXXX K R+LN F+G++ S G QDWAAPLPASPV+QEYR + ++E GP+VSTGPLAA+FSTAKGIGSDQLFGND+ET DMR+ERQTKLAG+ GARAISSDMYFGDGQ+ GYN P+VDELAA AA++LR+VGQ +A+GVGLLKDAS NFF+SFR Sbjct: 1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDT-VVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATC-----APVQQPPARVAVQQDSR--------RSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTV---KGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRELNAFLGHTPRS-GTTMQDWAAPLPASPVVQEYRLALT--REETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDC--VRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFR 499
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_004300238.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Fragaria vesca subsp. vesca]) HSP 1 Score: 171.0 bits (432), Expect = 9.000e-39 Identity = 87/171 (50.88%), Postives = 118/171 (69.01%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQPNKDPAIDRE--EAAASPPA 177 +D+ A FK++K + EN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM GGN +A FF++HG T GGK+E+KY+SRAAELY+ LSK VA M+ DA AS++ A+ GL ++ S + P +E E +ASP A Sbjct: 7 NDKNAVFKKLKSKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRTMTFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMVEDAGLPSSPVASQSGQAS--NGLPDVKTSEAMKEKPIAKQETPEVSASPKA 175
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_019254153.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nicotiana attenuata] >OIS97466.1 putative adp-ribosylation factor gtpase-activating protein agd8 [Nicotiana attenuata]) HSP 1 Score: 169.5 bits (428), Expect = 2.600e-38 Identity = 87/173 (50.29%), Postives = 116/173 (67.05%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDREEAAASPPAQQ 179 +D+ A F+++K +P+N++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL M GGN +A FF++HG T GGKVE+KY+SRAAELYK LSK VA DA LP+S A + G + S P K+ + +EE ASP Q Sbjct: 7 TDKNAVFRKLKAKPDNKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLKMMYFGGNNRAQVFFKQHGWTDGGKVEAKYTSRAAELYKQLLSKEVAKSKAEDAG----LPSSPVASQGVQSTNGFSEVKTSEAP-KETSSFKEETPASPKVSQ 174
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_004244392.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Solanum lycopersicum]) HSP 1 Score: 169.1 bits (427), Expect = 3.400e-38 Identity = 87/175 (49.71%), Postives = 114/175 (65.14%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDRE--EAAASPPAQQ 179 +D+ A F+++K +PEN++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P QL M GGN +A FF++HG T GGK+E+KY+SRAAELYK LSK VA D LP S A + G N+ +S P + E E +ASP A Q Sbjct: 7 TDKNAVFRKLKAKPENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPDQLKMMYFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQLLSKEVAKSKAEDTG----LPTSPVASQLVQTTNGFSNIKISEAPKETSLFKDETPEVSASPKASQ 177
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_013597537.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica oleracea var. oleracea] >XP_013707636.1 probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica napus]) HSP 1 Score: 169.1 bits (427), Expect = 3.400e-38 Identity = 83/173 (47.98%), Postives = 122/173 (70.52%), Query Frame = 0 Query: 5 VTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQ-PNKDPAIDREEAAASPPA 177 +++SD+ A F+++K + +N+VCFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM GGN +A FF++HG T GGK+E+KY+SRAA+LY+ L+K VA + DA+ LP+S A G+ + + + P K+ ++EA +SP A Sbjct: 1 MSSSDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAI--ALPSSPLAAEGSN-GVSSFSVKEELPPKESFTVKQEATSSPKA 170
BLAST of NO12G02570 vs. NCBI_GenBank
Match: NP_001136707.1 (putative ARF GTPase-activating domain family protein [Zea mays] >ACF82443.1 unknown [Zea mays] >AQK61537.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays] >AQK61542.1 ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays]) HSP 1 Score: 168.3 bits (425), Expect = 5.800e-38 Identity = 79/140 (56.43%), Postives = 103/140 (73.57%), Query Frame = 0 Query: 4 FVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSD-ASALEPLPASETA 143 F +D+ A F+R+K +PEN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHITFVRS +LD WTP QL M GGN +A FF++HG T GGKVE+KY+SRAAELY+ L+K VA ++D A P+ ASE + Sbjct: 10 FDAYTDKNAIFRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNKEVAKSAITDNALPSSPVTASEAS 149
BLAST of NO12G02570 vs. NCBI_GenBank
Match: AQK61538.1 (ADP-ribosylation factor GTPase-activating protein AGD10 [Zea mays]) HSP 1 Score: 168.3 bits (425), Expect = 5.800e-38 Identity = 79/140 (56.43%), Postives = 103/140 (73.57%), Query Frame = 0 Query: 4 FVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSD-ASALEPLPASETA 143 F +D+ A F+R+K +PEN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHITFVRS +LD WTP QL M GGN +A FF++HG T GGKVE+KY+SRAAELY+ L+K VA ++D A P+ ASE + Sbjct: 10 FDAYTDKNAIFRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNKEVAKSAITDNALPSSPVTASEAS 149
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_009136880.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica rapa]) HSP 1 Score: 167.9 bits (424), Expect = 7.600e-38 Identity = 84/177 (47.46%), Postives = 120/177 (67.80%), Query Frame = 0 Query: 1 MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQ-PNKDPAIDREEAAASPPA 177 MS +D+ A F+++K + +N+VCFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM GGN +A FF++HG T GGK+E+KY+SRAA+LY+ L+K VA + DA+ LP+S A G+ + + + P K+ + EA +SP A Sbjct: 1 MSSSDNLTDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAI--ALPSSPLAAEGSN-GVSSFSVKEELPPKESFTGKHEATSSPKA 174
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_015085589.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Solanum pennellii]) HSP 1 Score: 167.9 bits (424), Expect = 7.600e-38 Identity = 84/164 (51.22%), Postives = 114/164 (69.51%), Query Frame = 0 Query: 8 SDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGC--GLDNMMLSYQPNKDPAIDREE 170 +D+ A F+++K + EN++CFDC + PTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P QL M GGN +A FF++HG T GGK+E+KY+SRAAELYK LSK VA DA LPAS A A+ G N+ +S P K+ ++ ++E Sbjct: 7 TDKNAVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPDQLKMMYFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQLLSKEVAKSKAEDAG----LPASPVASQAVQTTNGFSNIKISEAP-KETSLFKDE 165
BLAST of NO12G02570 vs. NCBI_GenBank
Match: XP_002463495.1 (probable ADP-ribosylation factor GTPase-activating protein AGD8 [Sorghum bicolor] >EER90493.1 hypothetical protein SORBI_3001G007600 [Sorghum bicolor]) HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37 Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = 0 Query: 4 FVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETA 143 F +D+ A F+R+K +PEN++CFDC + PTWAS TYG+F+C +CSA HR+LGVHITFVRS +LD WTP QL M GGN +A FF++HG T GGKVE+KY+SRAAELY+ L+K VA ++D +AL P + A Sbjct: 5 FDAFTDKNAVFRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNKEVAKSAMTD-NALPSSPVTSEA 142 The following BLAST results are available for this feature:
BLAST of NO12G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02570 ID=NO12G02570|Name=NO12G02570|organism=Nannochloropsis oceanica|type=gene|length=1605bpback to top protein sequence of NO12G02570.1 >NO12G02570.1-protein ID=NO12G02570.1-protein|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bpback to top Synonyms
Publications
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