NO12G02550, NO12G02550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G02550 vs. NCBI_GenBank
Match: EWM25780.1 (phosphatidylinositol 4-kinase [Nannochloropsis gaditana]) HSP 1 Score: 599.7 bits (1545), Expect = 7.600e-168 Identity = 302/418 (72.25%), Postives = 324/418 (77.51%), Query Frame = 0 Query: 1 MFSLLPFLVYWLAVQEGLRVGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPNWLNEEHIARQCPEVAAHSVHLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYDDDQDYFLDLHATPLSPSY 419 M+SLLPFLVYWLAVQEGLRVGGP G FDADAMA+TPAVFDSQIEEC+PQIATLLACTKVDGPPD MRRNRWIEQQVIEKCTSNVHLGLKL+WLLRAALGHLEIPTRRGLPQITGERQRAHLM+LLNTGE LAR G+QSPGCL LRARYFAHCT FVAALVKLSF++KGVSS+RRLTAL QGIDRVN LLFRLMHTRGEEME +P+WL EEHIARQCPEVAAHSVHLPMLDG++PIFRFLRLVS ECELLPSRERCPYMVVAELLQTERNTRCGSARLYT GATLGCS+WDALD R FPESLLYPDDHPAMR+P++PF+FNNDY+D+ DYFLDLHATP +P + Sbjct: 1 MYSLLPFLVYWLAVQEGLRVGGP----GGPEGLRLSSGSRDAFLRDGFPSQHQLGGFDADAMAITPAVFDSQIEECIPQIATLLACTKVDGPPDAMRRNRWIEQQVIEKCTSNVHLGLKLFWLLRAALGHLEIPTRRGLPQITGERQRAHLMSLLNTGEILAREGQQSPGCLRPLRARYFAHCTTFVAALVKLSFDVKGVSSVRRLTALHQGIDRVNALLFRLMHTRGEEMEGGPDEASQSPQTPGSRPSASPPQRHGVSAVTGGGSAGASA------HPSWLTEEHIARQCPEVAAHSVHLPMLDGSSPIFRFLRLVSAECELLPSRERCPYMVVAELLQTERNTRCGSARLYTGGATLGCSVWDALDHRVFPESLLYPDDHPAMRYPVRPFVFNNDYNDEDDYFLDLHATPHAPPH 408
BLAST of NO12G02550 vs. NCBI_GenBank
Match: CBJ28976.1 (similar to phosphatidylinositol 4-kinase III beta [Ectocarpus siliculosus]) HSP 1 Score: 107.5 bits (267), Expect = 1.200e-19 Identity = 104/322 (32.30%), Postives = 141/322 (43.79%), Query Frame = 0 Query: 70 DSQIEECMPQIATLLACTKVDGPPDTMRRNRWIEQQVI--------EKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAHLMNLLNTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGVSSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPNWLNEEHIARQCPEVAAHSVHLPM------LDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGSARLYTNGATLGCSIWDALDQRQFPESL 378 DS +E +PQ+A +L V RN I Q V+ ++C N+ L +++ W E RR PQ G A N+ A G P L R Y A FV L+ + LK + RRL+AL + RVN +L R M TRG E XXXXXXXXXXX WLNE +A CPEV+ H++HLP+ A R LRL C +LPS+E+ PY+VVAE+LQT + S RLY G + G + D ++++ P++L Sbjct: 57 DSDVEFFVPQLAAVLMSKGVPS------RNVHITQLVVGRLSANLQQRCFGNIGLAVQMMW-------QFEAVGRR--PQEDGPSWNA----FKNSYVLAALNGDNLPEQLRMQRRAYCADSMAFVDTLMDIGDSLKKLPIKRRLSALDNELGRVNRMLLRRMQTRGASFE----------------------------IPGDTVXXXXXXXXXXXXXXEWLNEHDVAAVCPEVSHHAIHLPIKVLKPGQPAATRAVRVLRLCRELCRVLPSKEKAPYLVVAEVLQT--SFSYASDRLYLEGGSAGVTCEDVVNKKTLPQAL 329 The following BLAST results are available for this feature:
BLAST of NO12G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02550 ID=NO12G02550|Name=NO12G02550|organism=Nannochloropsis oceanica|type=gene|length=1407bpback to top protein sequence of NO12G02550.1 >NO12G02550.1-protein ID=NO12G02550.1-protein|Name=NO12G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bpback to top Synonyms
Publications
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