NO12G02510, NO12G02510 (gene) Nannochloropsis oceanica

Overview
NameNO12G02510
Unique NameNO12G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1067
Alignment locationchr12:717080..718146 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:717080..718146 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO12G02510 vs. NCBI_GenBank
Match: EWM25783.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana] >EWM25784.1 Pentatricopeptide repeat containing protein [Nannochloropsis gaditana] >EWM25785.1 Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 182.6 bits (462), Expect = 8.600e-43
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0 
Query:    1 MALRQLLRRGATVASVVIPTSQRAVACPVVASLRYVSSTSVTQLPLDGSKMPSATESEEEEGREPSGTPWTPAPVAEDYEETIQILLESHKVEDALDIFGRMIKRGFRPSSNITDELYAVAKTKPEWQAAAVKALDGLP 140
            M LR+ L+ GA  A+      QRA   PV+A +R VSSTS  + P +G+++P+AT+SEE+EGRE +GTPWTPAPVAEDYEETIQILL SHKVEDALDIFGRMIKRGFRPSS ITD+LY  AKTKPEWQAAAVKAL GLP
Sbjct:    1 MTLRRFLQGGALAAAGAKLGWQRAAMSPVLA-MRSVSSTSAIRAPSEGNEVPAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGRMIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP 138
The following BLAST results are available for this feature:
BLAST of NO12G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25783.18.600e-4370.50Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010189NSK010189Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02510.1NO12G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592461gene_5420Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100176g8gene4737Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02510.1NO12G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02510 ID=NO12G02510|Name=NO12G02510|organism=Nannochloropsis oceanica|type=gene|length=1067bp
ATGGCCCTACGACAACTACTGCGGCGTGGGGCGACTGTGGCATCGGTGGT
CATTCCGACCTCGCAGAGAGCCGTAGCGTGTCCCGTCGTGGCCTCCTTGg
tacgtgagaaggggaagaagagagagggaggaggatggggcagcgtgatg
catgagagagagatccataccctcccccaccactcatacaaacacgagca
gAGGTATGTCTCGAGCACGTCGGTGACCCAGCTGCCGTTGGATGGGAGCA
AGATGCCCTCGGCGACAGAGAGTGAGGAGGAGGAGGGCAGGGAACCCTCA
Ggtgagtcccgcgctaaagtggagatgcttgggatgaacttttggaatct
cactgtaggcaacagacagggctcctgatatatgtcaattcagaatggtc
tggatggcatactaccgcgaagagatgcgctttttaaaaccccagagaca
tgtgatgccttcctttttatccaattcttctgcattgcactttaaattta
atcattctactcaatcaaatcccactacgtccaattaaaattcagGCACC
CCTTGGACGCCTGCACCGGTGGCGGAGGACTACGAGGAGACGATTCAAAT
CTTGCTCGAGAGCCACAAGgtaaggaagaggacaaggagggaagagaaag
gattgggttgagctgtagatagtcatgtattatcacacaggctcactcga
aactcacctcatttccattctgaaacatagGTGGAGGATGCACTGGATAT
CTTTGGGCGAATGATCAAGCGTGGTTTTCGACCCAGCTCAAATgtaagcc
tctctttcttcgtccttttttgtctagcgcggcgctgtaaattgctcgct
atctgcacttctttcatcttgcttgcaacggaatacgtcaattcatcctc
aattattgtgatctttgaagatgcggcaccaaagcaatctttttcccttc
cctttcttcatttccctatgcctcctcgtctagATCACGGACGAGCTGTA
CGCTGTGGCCAAGACGAAGCCCGAGTGGCAGGCAGCAGCTGTGAAGGCGC
TTGATGGTCTGCCCTAA
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protein sequence of NO12G02510.1

>NO12G02510.1-protein ID=NO12G02510.1-protein|Name=NO12G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MALRQLLRRGATVASVVIPTSQRAVACPVVASLRYVSSTSVTQLPLDGSK
MPSATESEEEEGREPSGTPWTPAPVAEDYEETIQILLESHKVEDALDIFG
RMIKRGFRPSSNITDELYAVAKTKPEWQAAAVKALDGLP*
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Synonyms
Publications