NO12G02500, NO12G02500 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02500 vs. NCBI_GenBank
Match: EWM25778.1 (zinc finger cchc domain-containing protein 7 [Nannochloropsis gaditana]) HSP 1 Score: 351.7 bits (901), Expect = 5.100e-93 Identity = 173/273 (63.37%), Postives = 199/273 (72.89%), Query Frame = 0 Query: 334 MLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASER-KKRGSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTPMLRRHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSHIPQHPLVPAPIAPTYYLQQGRG 606 ML++R T+KFRGV+ TYKKA D RAL EMEG RIDNR VFL ASER + RGS+GKGESRYFL+DK LFCRRCH+VGHTMKFCPNP KA+PCTICAA+ GH D CPE+ P G LCLQCGA+ HEDS CV RL+A A LKA VRCL CA++GHGALCGPHA +P +V CF+CGS+GHFGYHC+ RPQ + LRRHSYSGTH+RYN DPP P PP PP + PS+IPQH LVP P+ T Y Q+GRG Sbjct: 1 MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALT-GHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHA--STNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQ---EAFQLRRHSYSGTHVRYNVDDPPAPDPP--PPVHTVPSNIPQHHLVPGPMVSTIYSQRGRG 265
BLAST of NO12G02500 vs. NCBI_GenBank
Match: OGQ88263.1 (RNA-binding protein [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15]) HSP 1 Score: 67.4 bits (163), Expect = 1.900e-7 Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 0 Query: 303 KTLRAWNLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASERKKRGSMGKG 391 K L L + +++D+LR++F RFG + +++ DRDT + RG T++ +A +A++EM+GT +D RN+ + ++ K RG G G Sbjct: 3 KKLFVGGLSWDTSDDSLRQSFERFGRITEAKVITDRDTGRSRGFGFVTFEDGGEASKAISEMDGTELDGRNIKVNEAQDKPRGGGGGG 90
BLAST of NO12G02500 vs. NCBI_GenBank
Match: EEF34811.1 (cellular nucleic acid binding protein, putative [Ricinus communis]) HSP 1 Score: 67.0 bits (162), Expect = 2.500e-7 Identity = 49/163 (30.06%), Postives = 63/163 (38.65%), Query Frame = 0 Query: 403 CRRCHEVGHTMKFCPN-PAKAKPCTICAAIDG-----------------GHDADSCPEVVRAGP-VGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDT 547 C C + GH CP+ K KPC +C +D GH + CPE + GP +CL+CG SGH+ C R + L ++C C GH LC SPR V C++CG GH G C S T T Sbjct: 184 CFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPNRCPEKHKGGPQSSKVCLKCGDSGHDMFSC----RNSYPLDDLKEIQCYICKNGGH--LC-------------CVNFVDNSPREVSCYKCGELGHTGSECSSLHDEATTT 327
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_015579903.1 (PREDICTED: protein AIR1 [Ricinus communis]) HSP 1 Score: 67.0 bits (162), Expect = 2.500e-7 Identity = 49/163 (30.06%), Postives = 63/163 (38.65%), Query Frame = 0 Query: 403 CRRCHEVGHTMKFCPN-PAKAKPCTICAAIDG-----------------GHDADSCPEVVRAGP-VGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDT 547 C C + GH CP+ K KPC +C +D GH + CPE + GP +CL+CG SGH+ C R + L ++C C GH LC SPR V C++CG GH G C S T T Sbjct: 193 CFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPNRCPEKHKGGPQSSKVCLKCGDSGHDMFSC----RNSYPLDDLKEIQCYICKNGGH--LC-------------CVNFVDNSPREVSCYKCGELGHTGSECSSLHDEATTT 336
BLAST of NO12G02500 vs. NCBI_GenBank
Match: AKF04446.1 (RNA-binding protein [Sandaracinus amylolyticus]) HSP 1 Score: 66.6 bits (161), Expect = 3.300e-7 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0 Query: 309 NLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLE-ASERKKRGS 387 NL F +TEDTLR F FGE++R ++ DR+T + RG T A DA RA++E++G +D RN+ + A ER R S Sbjct: 61 NLSFHTTEDTLRATFRAFGEVDRVDVPTDRETGRVRGFAFVTMASAQDAARAISELDGAALDGRNLRVNVAQERPPRRS 139
BLAST of NO12G02500 vs. NCBI_GenBank
Match: WP_053231789.1 (RNA-binding protein [Sandaracinus amylolyticus]) HSP 1 Score: 66.6 bits (161), Expect = 3.300e-7 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0 Query: 309 NLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLE-ASERKKRGS 387 NL F +TEDTLR F FGE++R ++ DR+T + RG T A DA RA++E++G +D RN+ + A ER R S Sbjct: 9 NLSFHTTEDTLRATFRAFGEVDRVDVPTDRETGRVRGFAFVTMASAQDAARAISELDGAALDGRNLRVNVAQERPPRRS 87
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_021407513.1 (zinc finger CCHC domain-containing protein 7 [Lonchura striata domestica] >XP_021407514.1 zinc finger CCHC domain-containing protein 7 [Lonchura striata domestica]) HSP 1 Score: 66.2 bits (160), Expect = 4.300e-7 Identity = 47/168 (27.98%), Postives = 57/168 (33.93%), Query Frame = 0 Query: 385 GSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA-XXXXXXXXXXXXXXXXSPR----YVYCFRCGSSGHFGYHCDSRPQGGTDTP 548 G + RY+ DK++ CR C GH K CP P KA PC +CA D H SCP CL C GH C+ R A+ + P SP VYC+ C GH GY C + G P Sbjct: 256 GGVRHSSMRYYRADKSVTCRNCQRPGHLSKNCPTPKKAPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFKECLER--------AYWNKHXXXXXXXXXXXXXXPEIWRQYHLTTKPGPIKAAGSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFP 405
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_005496927.1 (PREDICTED: zinc finger CCHC domain-containing protein 7 [Zonotrichia albicollis]) HSP 1 Score: 65.5 bits (158), Expect = 7.300e-7 Identity = 43/157 (27.39%), Postives = 52/157 (33.12%), Query Frame = 0 Query: 393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRL--RATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTP 548 RY+ DK + CR CH GH K CP P K PC +CA D H SCP CL C GH C+ R C ++ S +YC+ C GH GY C + G P Sbjct: 276 RYYRADKNVTCRNCHRPGHLSKNCPTPKKVPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFRECLERAYWNKXXXXXXXXXXXXXXCPEIWRQYHLTTKPGPIQAAGSPSPSERAVS---IYCYNCSRQGHLGYECSEKRMQGNMFP 419
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_009096371.2 (PREDICTED: zinc finger CCHC domain-containing protein 7 [Serinus canaria]) HSP 1 Score: 65.1 bits (157), Expect = 9.500e-7 Identity = 45/159 (28.30%), Postives = 53/159 (33.33%), Query Frame = 0 Query: 393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRL--RATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYV--YCFRCGSSGHFGYHCDSRPQGGTDTP 548 RY+ DK + CR CH GH K CP P K PC +CA D H SCP CL C GH C+ R C ++ S R V YC+ C GH GY C + G P Sbjct: 270 RYYRADKNVTCRNCHRPGHLSKNCPTPKKVPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFRECLERAYWNKXXXXXXXXXXXXXXCPEIW-------RQYHLTTKPGPIKAAGSPSERAVSLYCYNCSRKGHLGYECSEKRMQGNMFP 411
BLAST of NO12G02500 vs. NCBI_GenBank
Match: OWK59615.1 (Zinc finger CCHC domain-containing protein 7, partial [Lonchura striata domestica]) HSP 1 Score: 65.1 bits (157), Expect = 9.500e-7 Identity = 46/160 (28.75%), Postives = 55/160 (34.38%), Query Frame = 0 Query: 393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA-XXXXXXXXXXXXXXXXSPR----YVYCFRCGSSGHFGYHCDSRPQGGTDTP 548 RY+ DK++ CR C GH K CP P KA PC +CA D H SCP CL C GH C+ R A+ + P SP VYC+ C GH GY C + G P Sbjct: 2 RYYRADKSVTCRNCQRPGHLSKNCPTPKKAPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFKECLER--------AYWNKHXXXXXXXXXXXXXXPEIWRQYHLTTKPGPIKAAGSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFP 143 The following BLAST results are available for this feature:
BLAST of NO12G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 10
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02500 ID=NO12G02500|Name=NO12G02500|organism=Nannochloropsis oceanica|type=gene|length=2266bpback to top protein sequence of NO12G02500.1 >NO12G02500.1-protein ID=NO12G02500.1-protein|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bpback to top Synonyms
Publications
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