NO12G02500, NO12G02500 (gene) Nannochloropsis oceanica

Overview
NameNO12G02500
Unique NameNO12G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2266
Alignment locationchr12:714467..716732 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger cchc domain-containing protein 7
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:714467..716732 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR001878Znf_CCHC
IPR000504RRM_dom
Homology
BLAST of NO12G02500 vs. NCBI_GenBank
Match: EWM25778.1 (zinc finger cchc domain-containing protein 7 [Nannochloropsis gaditana])

HSP 1 Score: 351.7 bits (901), Expect = 5.100e-93
Identity = 173/273 (63.37%), Postives = 199/273 (72.89%), Query Frame = 0
Query:  334 MLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASER-KKRGSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTPMLRRHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSHIPQHPLVPAPIAPTYYLQQGRG 606
            ML++R T+KFRGV+  TYKKA D  RAL EMEG RIDNR VFL ASER + RGS+GKGESRYFL+DK LFCRRCH+VGHTMKFCPNP KA+PCTICAA+  GH  D CPE+    P G LCLQCGA+ HEDS CV RL+A A LKA   VRCL CA++GHGALCGPHA                +P +V CF+CGS+GHFGYHC+ RPQ   +   LRRHSYSGTH+RYN  DPP P PP  PP +  PS+IPQH LVP P+  T Y Q+GRG
Sbjct:    1 MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALT-GHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHA--STNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQ---EAFQLRRHSYSGTHVRYNVDDPPAPDPP--PPVHTVPSNIPQHHLVPGPMVSTIYSQRGRG 265          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: OGQ88263.1 (RNA-binding protein [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15])

HSP 1 Score: 67.4 bits (163), Expect = 1.900e-7
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 0
Query:  303 KTLRAWNLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLEASERKKRGSMGKG 391
            K L    L + +++D+LR++F RFG +   +++ DRDT + RG    T++   +A +A++EM+GT +D RN+ +  ++ K RG  G G
Sbjct:    3 KKLFVGGLSWDTSDDSLRQSFERFGRITEAKVITDRDTGRSRGFGFVTFEDGGEASKAISEMDGTELDGRNIKVNEAQDKPRGGGGGG 90          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: EEF34811.1 (cellular nucleic acid binding protein, putative [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 2.500e-7
Identity = 49/163 (30.06%), Postives = 63/163 (38.65%), Query Frame = 0
Query:  403 CRRCHEVGHTMKFCPN-PAKAKPCTICAAIDG-----------------GHDADSCPEVVRAGP-VGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDT 547
            C  C + GH    CP+   K KPC +C  +D                  GH  + CPE  + GP    +CL+CG SGH+   C    R +  L     ++C  C   GH  LC                    SPR V C++CG  GH G  C S     T T
Sbjct:  184 CFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPNRCPEKHKGGPQSSKVCLKCGDSGHDMFSC----RNSYPLDDLKEIQCYICKNGGH--LC-------------CVNFVDNSPREVSCYKCGELGHTGSECSSLHDEATTT 327          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_015579903.1 (PREDICTED: protein AIR1 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 2.500e-7
Identity = 49/163 (30.06%), Postives = 63/163 (38.65%), Query Frame = 0
Query:  403 CRRCHEVGHTMKFCPN-PAKAKPCTICAAIDG-----------------GHDADSCPEVVRAGP-VGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDT 547
            C  C + GH    CP+   K KPC +C  +D                  GH  + CPE  + GP    +CL+CG SGH+   C    R +  L     ++C  C   GH  LC                    SPR V C++CG  GH G  C S     T T
Sbjct:  193 CFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPNRCPEKHKGGPQSSKVCLKCGDSGHDMFSC----RNSYPLDDLKEIQCYICKNGGH--LC-------------CVNFVDNSPREVSCYKCGELGHTGSECSSLHDEATTT 336          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: AKF04446.1 (RNA-binding protein [Sandaracinus amylolyticus])

HSP 1 Score: 66.6 bits (161), Expect = 3.300e-7
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query:  309 NLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLE-ASERKKRGS 387
            NL F +TEDTLR  F  FGE++R ++  DR+T + RG    T   A DA RA++E++G  +D RN+ +  A ER  R S
Sbjct:   61 NLSFHTTEDTLRATFRAFGEVDRVDVPTDRETGRVRGFAFVTMASAQDAARAISELDGAALDGRNLRVNVAQERPPRRS 139          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: WP_053231789.1 (RNA-binding protein [Sandaracinus amylolyticus])

HSP 1 Score: 66.6 bits (161), Expect = 3.300e-7
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0
Query:  309 NLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIATYKKASDAGRALTEMEGTRIDNRNVFLE-ASERKKRGS 387
            NL F +TEDTLR  F  FGE++R ++  DR+T + RG    T   A DA RA++E++G  +D RN+ +  A ER  R S
Sbjct:    9 NLSFHTTEDTLRATFRAFGEVDRVDVPTDRETGRVRGFAFVTMASAQDAARAISELDGAALDGRNLRVNVAQERPPRRS 87          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_021407513.1 (zinc finger CCHC domain-containing protein 7 [Lonchura striata domestica] >XP_021407514.1 zinc finger CCHC domain-containing protein 7 [Lonchura striata domestica])

HSP 1 Score: 66.2 bits (160), Expect = 4.300e-7
Identity = 47/168 (27.98%), Postives = 57/168 (33.93%), Query Frame = 0
Query:  385 GSMGKGESRYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA-XXXXXXXXXXXXXXXXSPR----YVYCFRCGSSGHFGYHCDSRPQGGTDTP 548
            G +     RY+  DK++ CR C   GH  K CP P KA PC +CA  D  H   SCP           CL C   GH    C+ R        A+ +                P                   SP      VYC+ C   GH GY C  +   G   P
Sbjct:  256 GGVRHSSMRYYRADKSVTCRNCQRPGHLSKNCPTPKKAPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFKECLER--------AYWNKHXXXXXXXXXXXXXXPEIWRQYHLTTKPGPIKAAGSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFP 405          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_005496927.1 (PREDICTED: zinc finger CCHC domain-containing protein 7 [Zonotrichia albicollis])

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-7
Identity = 43/157 (27.39%), Postives = 52/157 (33.12%), Query Frame = 0
Query:  393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRL--RATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTP 548
            RY+  DK + CR CH  GH  K CP P K  PC +CA  D  H   SCP           CL C   GH    C+ R                   C ++                          S   +YC+ C   GH GY C  +   G   P
Sbjct:  276 RYYRADKNVTCRNCHRPGHLSKNCPTPKKVPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFRECLERAYWNKXXXXXXXXXXXXXXCPEIWRQYHLTTKPGPIQAAGSPSPSERAVS---IYCYNCSRQGHLGYECSEKRMQGNMFP 419          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: XP_009096371.2 (PREDICTED: zinc finger CCHC domain-containing protein 7 [Serinus canaria])

HSP 1 Score: 65.1 bits (157), Expect = 9.500e-7
Identity = 45/159 (28.30%), Postives = 53/159 (33.33%), Query Frame = 0
Query:  393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRL--RATAELKAHTSVRCLRCAQMGHGALCGPHAXXXXXXXXXXXXXXXXSPRYV--YCFRCGSSGHFGYHCDSRPQGGTDTP 548
            RY+  DK + CR CH  GH  K CP P K  PC +CA  D  H   SCP           CL C   GH    C+ R                   C ++                          S R V  YC+ C   GH GY C  +   G   P
Sbjct:  270 RYYRADKNVTCRNCHRPGHLSKNCPTPKKVPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFRECLERAYWNKXXXXXXXXXXXXXXCPEIW-------RQYHLTTKPGPIKAAGSPSERAVSLYCYNCSRKGHLGYECSEKRMQGNMFP 411          
BLAST of NO12G02500 vs. NCBI_GenBank
Match: OWK59615.1 (Zinc finger CCHC domain-containing protein 7, partial [Lonchura striata domestica])

HSP 1 Score: 65.1 bits (157), Expect = 9.500e-7
Identity = 46/160 (28.75%), Postives = 55/160 (34.38%), Query Frame = 0
Query:  393 RYFLLDKTLFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVGVLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA-XXXXXXXXXXXXXXXXSPR----YVYCFRCGSSGHFGYHCDSRPQGGTDTP 548
            RY+  DK++ CR C   GH  K CP P KA PC +CA  D  H   SCP           CL C   GH    C+ R        A+ +                P                   SP      VYC+ C   GH GY C  +   G   P
Sbjct:    2 RYYRADKSVTCRNCQRPGHLSKNCPTPKKAPPCCLCAGRD--HLQHSCP--------ARFCLNCCLPGHYFKECLER--------AYWNKHXXXXXXXXXXXXXXPEIWRQYHLTTKPGPIKAAGSPSERAVSVYCYNCSRKGHLGYECSEKRMQGNMFP 143          
The following BLAST results are available for this feature:
BLAST of NO12G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM25778.15.100e-9363.37zinc finger cchc domain-containing protein 7 [Nann... [more]
OGQ88263.11.900e-735.23RNA-binding protein [Deltaproteobacteria bacterium... [more]
EEF34811.12.500e-730.06cellular nucleic acid binding protein, putative [R... [more]
XP_015579903.12.500e-730.06PREDICTED: protein AIR1 [Ricinus communis][more]
AKF04446.13.300e-744.30RNA-binding protein [Sandaracinus amylolyticus][more]
WP_053231789.13.300e-744.30RNA-binding protein [Sandaracinus amylolyticus][more]
XP_021407513.14.300e-727.98zinc finger CCHC domain-containing protein 7 [Lonc... [more]
XP_005496927.17.300e-727.39PREDICTED: zinc finger CCHC domain-containing prot... [more]
XP_009096371.29.500e-728.30PREDICTED: zinc finger CCHC domain-containing prot... [more]
OWK59615.19.500e-728.75Zinc finger CCHC domain-containing protein 7, part... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010188NSK010188Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02500.1NO12G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592457gene_5418Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100176g10gene4735Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02500.1NO12G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02500 ID=NO12G02500|Name=NO12G02500|organism=Nannochloropsis oceanica|type=gene|length=2266bp
ACAGCTACATAAGCTGCTCAGCTGATCTGTGCTGCTGTACATGCCCTGGC
CGCAGGCGCATTACACATTCGCCAGCTAGGCCTCTCTTAGACCTCCTCTC
CCACGCACATAATTACCCAACGTCGATTCTACCACACAAGGGGCACCTCT
TACACTCGAGTGGTGGTCAGCTGAGCATATGAGCAAGCGCTCGAAAAAAG
GCGCGGCTGCTGCCGCTGCTGCTGCAGCTGCAAAAGACGAGGAGGAGATG
GTGGAGGCGACGGACGTGGACGAGCAAGGAGAAGAAAGCAACCGGCCAAG
CAAGAAGAGCAAGTCGTCCCCGCTTAGCTCATACACGCTCAAGGGCGTGG
ATGTGGAAAAAGCGGAGGGGGACGAGACGGAAAGGGACGAGGATGAAAAC
AAGACGTCGCATGGTAACAGCCACAGCTCCAAGAGCAGCAAGTCCCCGCG
GGCTAGAAAATCCCCTTCTCCCTCACACAAATCCGACTCGGCTGACAAGC
CTTCTCGAACAGCATCACCAAGAGGCGAGCAGGACAGTGTAACTCTGGCA
GTGCCTATAACAAGTGCCTCGGCCAAAGCAATTCTTCCGTACAGCAGCCC
CAAGAACGGTTTATCCTCCAAATCACGACATGCCTCCCGCTCTCCCTCTC
CTTCCCTCCCTCCTCCCCCTCCTACTCTTCCTCCTGCAGTCCCTGGCCAG
ACCCTGGCAACAACACTCCCAAAACCCGACTCATCTGCTGCTCTCCTCCC
CAGTGTTGCTTCAGCTGAGTCTGTCCTTGTCCCTAAAAAGACAGCAGCTT
CCTTATCAAGTTTTGCCAAGCGCCTTCTTGTTCCCCGAGCTCCTCAGGAA
GTGGAGGTACCCGAGGCGATTCCATTGAACGATTTCATCTTGGAAGGCTT
TGGGCAGGAGCATGTGCATCGACCCACGGCTCAATTGGAGGAGGATGAGA
GCAGTGAGGAGGAGGAGGGAGGGGAGGAGGGAGGGGTCGCAAGTGTGGGC
AAGCCGGGGGCAGTGGGGTGTGTGGGGGACGATAAGGACGAGGATGGTGA
GGAACGGAAGGAGGACGCGCCCGTGCATACGTGTAAGACGCTACGGGCGT
GGAACCTGTGGTTTTCGAGCACGGAAGACACGTTGAGGAGGGCTTTCGGG
AGGTTTGGGGAGCTGGAGCGTTTTGAGATGTTGTATGACCGGGATACGAA
GAAGTTTCGAGGGGTGGTGATTGCCACGTATAAGAAGGCGAGTGACGCGG
GGAGGGCTTTGACGGAAATGGAAGGAACAAGGATCGACAACCGGAATGTA
TTCTTGGAGGCTTCGGAAAGGAAAAAGAGGGGGTCGATGGGGAAGGGGGA
ATCACGGTATTTCCTCCTTGATAAGACCTTATTCTGCCGTCGGTGCCATG
AGGTGGGACATACAATGAAATTCTGCCCGAATCCCGCCAAGGCAAAGCCA
TGCACTATTTGCGCGGCAATTGATGGAGGCCACGATGCTGACTCCTGCCC
CGAGGTGGTGCGTGCGGGGCCTGTGGGTGTGTTGTGTTTGCAGTGCGGTG
CTTCGGGTCACGAGGACTCGGTGTGCGTTCGAAGGCTGAGGGCCACGGCG
GAGTTGAAGGCACACACAAGTGTCCGATGCTTGAGATGTGCACAGATGGG
GCATGGCGCATTGTGTGGACCTCATGCTGCTGCTGCTGCTGCTGCTGCTG
ATGGTGGGAGAGGAGGAGGGAGGAAGTCTCCCAGGTATGTTTATTGCTTT
CGGTGTGGATCTTCGGGCCATTTTGGATATCACTGTGATTCGCGACCGCA
GGGGGGAACGGATACACCAATGCTTCGTCGTCATTCCTACTCGGGGACGC
ACATTCGGTACAATGCCACGGACCCTCCCCCTCCTTTTCCTCCATCTGGA
CCTCCTGCCTACGAGGCCCCCTCCCATATCCCGCAACATCCTCTTGTCCC
TGCTCCGATTGCCCCGACCTACTATCTCCAACAGGGAAGGGGAGGCGAGA
CGGTTGGAGGGAGGAGTAGTGGGGTCGATGATGGTGGTGGAGGAGGAGGA
AGCCGTCACGACCGGAACCCCGCACTACCTCCCCAGTATCACGCCGCGCA
CGCTTCATCAGGAACGTATTCCCCTCCACGACAGGATTATAAGCGGCGGA
GATCGGGGGGAAATGAACGTAACTGAGGAATAGGATGGTTGCGATGGAGG
GGGAAGAGGGGAGAAGGCGATGAAGTGTACAAGTAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAG
back to top

protein sequence of NO12G02500.1

>NO12G02500.1-protein ID=NO12G02500.1-protein|Name=NO12G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MSKRSKKGAAAAAAAAAAKDEEEMVEATDVDEQGEESNRPSKKSKSSPLS
SYTLKGVDVEKAEGDETERDEDENKTSHGNSHSSKSSKSPRARKSPSPSH
KSDSADKPSRTASPRGEQDSVTLAVPITSASAKAILPYSSPKNGLSSKSR
HASRSPSPSLPPPPPTLPPAVPGQTLATTLPKPDSSAALLPSVASAESVL
VPKKTAASLSSFAKRLLVPRAPQEVEVPEAIPLNDFILEGFGQEHVHRPT
AQLEEDESSEEEEGGEEGGVASVGKPGAVGCVGDDKDEDGEERKEDAPVH
TCKTLRAWNLWFSSTEDTLRRAFGRFGELERFEMLYDRDTKKFRGVVIAT
YKKASDAGRALTEMEGTRIDNRNVFLEASERKKRGSMGKGESRYFLLDKT
LFCRRCHEVGHTMKFCPNPAKAKPCTICAAIDGGHDADSCPEVVRAGPVG
VLCLQCGASGHEDSVCVRRLRATAELKAHTSVRCLRCAQMGHGALCGPHA
AAAAAAADGGRGGGRKSPRYVYCFRCGSSGHFGYHCDSRPQGGTDTPMLR
RHSYSGTHIRYNATDPPPPFPPSGPPAYEAPSHIPQHPLVPAPIAPTYYL
QQGRGGETVGGRSSGVDDGGGGGGSRHDRNPALPPQYHAAHASSGTYSPP
RQDYKRRRSGGNERN*
back to top
Synonyms
Publications