NO12G02470, NO12G02470 (gene) Nannochloropsis oceanica

Overview
NameNO12G02470
Unique NameNO12G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr12:703394..704269 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:703394..704269 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO12G02470 vs. NCBI_GenBank
Match: EWM25775.1 (hypothetical protein Naga_100176g14 [Nannochloropsis gaditana])

HSP 1 Score: 132.9 bits (333), Expect = 1.600e-27
Identity = 104/316 (32.91%), Postives = 152/316 (48.10%), Query Frame = 0 
Query:    1 MSQNWHLRQQRQRLLNSLPAAPARLFIKLLHSLPLEKGEREQEVKGGESGSSIDPAKATCRTVLGSRHMEEIRCLGTVVKHDEVNAGLWLDDGTGVVYVQLDKQA---LLPAVGELCEVMGPMKLVG----LSIDRGNQQQQPQISEV--------HRIIAAQRVFIPQDPNFETAFTLSTIDLFRTVYLAHTPPLS-LHETPC---------HVAANRPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDGMILSHILHLQSNGKAFNGVGVQALQGLVPSLPELEASLSRLQMEGLVYCMQGRFYPL 292
            M +N H +++ +  L SLPAAPAR+F+ L++SLP  + E  +EV+     S  D        +   RH+E IRC G V K +E  AG WLDDG+G+V V L ++    L+P +G+LCEV+G ++  G    +    G Q QQ +  E          R++ A  VF P+D N ETAF LS I   +    AH+   S   +T C           A++ P P                                  +D  I+  IL   ++ +   G+  QAL+  + +  E++ASLSRLQ+EG VY M G F+PL
Sbjct:    1 MKRNRHQQEEWESFLQSLPAAPARIFVSLIYSLPRVQEEGREEVQRENRYSGTD----RLLLLWHGRHLENIRCHGIVTKREE-GAGFWLDDGSGLVQVLLGERVGKDLIPPLGQLCEVVGALRYAGKDTAIDASTGKQGQQMRNQEEDRRLTCARQRVVVAGHVFQPRDANAETAFMLSIISWLKKHSAAHSSSTSKALKTACLQSAPPRLREAASSFPRP------------------------NPPSTSGPSDVDSRIMDAILR-HTDRETKRGMTPQALEA-IAAPREVQASLSRLQVEGSVYEMHGAFFPL 285
The following BLAST results are available for this feature:
BLAST of NO12G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25775.11.600e-2732.91hypothetical protein Naga_100176g14 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010183NSK010183Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02470.1NO12G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592447gene_5411Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100176g14gene4731Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02470.1NO12G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02470 ID=NO12G02470|Name=NO12G02470|organism=Nannochloropsis oceanica|type=gene|length=876bp
ATGAGTCAGAATTGGCACCTAAGACAACAGCGACAGCGCCTTCTTAATTC
TTTGCCAGCAGCACCCGCGCGTCTTTTCATCAAACTGCTCCACTCCCTCC
CTCTCGAGAAAGGTGAAAGGGAACAGGAGGTCAAGGGAGGGGAAAGTGGC
AGCAGCATTGATCCGGCCAAGGCCACTTGCAGGACCGTCCTCGGCAGCCG
ACACATGGAAGAGATTCGATGCTTGGGGACGGTTGTGAAGCACGACGAGG
TGAATGCAGGGTTATGGCTTGATGATGGGACGGGAGTCGTCTATGTGCAG
CTGGATAAGCAGGCCCTCCTCCCGGCAGTAGGGGAGCTGTGTGAGGTGAT
GGGGCCAATGAAGCTTGTGGGGTTATCAATCGACCGTGGAAATCAACAGC
AGCAGCCGCAGATATCTGAAGTCCACCGCATCATCGCGGCTCAGCGCGTG
TTTATTCCCCAGGACCCTAACTTCGAGACCGCCTTCACCTTGTCGACCAT
AGACCTCTTCCGCACCGTTTATCTGGCCCACACCCCGCCTCTGTCTTTGC
ATGAGACCCCGTGTCATGTCGCAGCAAATAGACCATCTCCTTCTCCTCCT
TCTCCTCCTTCTCCTCCTCCTCCACAAGCATCCTCTGCACCGCCCTCCCC
CTCGCTCCCCTTGTCCTCGTCCTTGTCCTCGTCATCCGCATCGATCGATG
GCATGATCCTAAGCCACATTTTGCACTTACAATCTAACGGGAAAGCCTTT
AACGGTGTGGGCGTTCAGGCACTTCAGGGCCTCGTTCCCTCCCTGCCTGA
ATTGGAGGCGAGCCTGTCGCGGCTGCAGATGGAAGGGCTGGTCTATTGCA
TGCAAGGGCGTTTTTACCCGCTTTGA
back to top

protein sequence of NO12G02470.1

>NO12G02470.1-protein ID=NO12G02470.1-protein|Name=NO12G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSQNWHLRQQRQRLLNSLPAAPARLFIKLLHSLPLEKGEREQEVKGGESG
SSIDPAKATCRTVLGSRHMEEIRCLGTVVKHDEVNAGLWLDDGTGVVYVQ
LDKQALLPAVGELCEVMGPMKLVGLSIDRGNQQQQPQISEVHRIIAAQRV
FIPQDPNFETAFTLSTIDLFRTVYLAHTPPLSLHETPCHVAANRPSPSPP
SPPSPPPPQASSAPPSPSLPLSSSLSSSSASIDGMILSHILHLQSNGKAF
NGVGVQALQGLVPSLPELEASLSRLQMEGLVYCMQGRFYPL*
back to top
Synonyms
Publications