NO12G02450, NO12G02450 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G02450 vs. NCBI_GenBank
Match: EWM25789.1 (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana]) HSP 1 Score: 256.1 bits (653), Expect = 1.700e-64 Identity = 124/192 (64.58%), Postives = 147/192 (76.56%), Query Frame = 0 Query: 113 VPFDSIVERLDKLERRVQADGEEIR------YSLDSLEDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCRVNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEEVLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLRVAVEAE 299 VP ++IVERL++LE +SLDSL+DDN SMLEIVSQT FDY+TTRLTPKTDR+CSWSYSQ KCVP CRC +QF GDYTLSR+CR+N N TA+ LCD S E +D+N+LV+A+R L+RGLG L+ L +AP+TSPECDW+WSSLRC P CRFYFKLGDYH+GRSCRLR VEAE Sbjct: 110 VPLETIVERLEELEXXXXXXXXXXXXXXXPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCD-PSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAE 300
BLAST of NO12G02450 vs. NCBI_GenBank
Match: CBJ32490.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 107.5 bits (267), Expect = 1.000e-19 Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 0 Query: 113 VPFDSIVERLDKLERRV--QADGEEIRYSLD-SLEDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCRVN-HNTTAVALCDADSHDEGNDDNVLVQAQRALLR-GLGQLEEVLAYYAPATSPECDWRWS------SLRCEPREDCRFYFKLGDYHVGRSCRLR 293 +P D + E L + R E R L+ + D+ ++LE + + V ++ TRLTP+TD +C WS+ + +C P C C Y+++ GDY RSCR+ +A CD + GND ++L + + + G + P T +C + + L C PR C F++K GD H GRSCRLR Sbjct: 55 MPADELAEELVGVFHRTMDSEKRERRRRELERDFDTDDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERELATCDP---ERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242
BLAST of NO12G02450 vs. NCBI_GenBank
Match: GAX11315.1 (hypothetical protein FisN_15Lh245 [Fistulifera solaris]) HSP 1 Score: 73.2 bits (178), Expect = 2.100e-9 Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0 Query: 206 VNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEE--VLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLR 293 V+H+ + + D + N V+V+ R LL G+ + + P T+PEC W W SL CEP +C F+ K GDYH+GRSCR+R Sbjct: 167 VHHHRSLKSSDLVDIEPKENPPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRVR 255
BLAST of NO12G02450 vs. NCBI_GenBank
Match: GAX12766.1 (hypothetical protein FisN_15Hh245 [Fistulifera solaris]) HSP 1 Score: 72.4 bits (176), Expect = 3.600e-9 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 217 DADSHDEGNDD--NVLVQAQRALLRGLGQLEE--VLAYYAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLR 293 D +D+ N+ V+V+ R LL G+ + + P T+PEC W W SL CEP DC F+ K GDYH+GRSCR+R Sbjct: 173 DLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRVR 252
BLAST of NO12G02450 vs. NCBI_GenBank
Match: XP_002186264.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65734.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7 Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 0 Query: 144 EDDNTSMLEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTLSRSCR 206 E+D+ ++L++ + +Y+TT++ P TD C W + +C P C CS++ Q GDY L RSCR Sbjct: 135 EEDDRTLLDVFGEVTKEYLTTKVIPDTDSSCRWDWRSTQCEPACACSFEAQWGDYHLGRSCR 196 The following BLAST results are available for this feature:
BLAST of NO12G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02450 ID=NO12G02450|Name=NO12G02450|organism=Nannochloropsis oceanica|type=gene|length=1739bpback to top protein sequence of NO12G02450.1 >NO12G02450.1-protein ID=NO12G02450.1-protein|Name=NO12G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bpback to top Synonyms
Publications
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