NO12G02440, NO12G02440 (gene) Nannochloropsis oceanica

Overview
NameNO12G02440
Unique NameNO12G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2266
Alignment locationchr12:699428..701693 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:699428..701693 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G02440 vs. NCBI_GenBank
Match: EWM25849.1 (hypothetical protein Naga_100021g74 [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 4.800e-75
Identity = 213/346 (61.56%), Postives = 239/346 (69.08%), Query Frame = 0
Query:   50 RALQAIGSQPLFSSGAYQGGWAGGGLNAGPGGRYLSSTLGDSFFLVSNRHAAAREGASMNWEGGNSAVSSSRQALPPRGGAVTGAVCGI--GAQGVSGLPPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGFLEGVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKKGGVVGDGGLXXXXXXXXXXXXXXXXGARAGSSSRSSIRPPQAR 394
            RALQAIGSQPLFSSG YQ   AGG     PGGRYLSSTLGDSFFLV+NR AAAREGAS+ WEGG+SA+ SSR +     GA  GA   +   +      PPR                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  FLEGVEA+QQ EV+RLL CMKTLGDENA+LIK+ EDG R RQENER+RRE  EFQE YAK+F+ LR+ALEEFR KYP E+NP NHVAS RETARVK+LE+E+ESL VRLNRE+EAGRKKDAM+A+YQAWY KLRQSV  KK    G+ G+                G+ A S   S+IRPPQ R
Sbjct:  194 RALQAIGSQPLFSSGLYQPTGAGGHQGV-PGGRYLSSTLGDSFFLVNNRQAAAREGASLAWEGGSSALGSSRHS----RGAGRGAAASLRKPSSVAVAAPPRT---SAGTEESPFSRQGASTALPAASNLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLEGVEAVQQGEVVRLLACMKTLGDENALLIKRAEDGERARQENERIRRETLEFQELYAKRFKGLRAALEEFREKYPHESNPANHVASLRETARVKSLEAEVESLTVRLNREKEAGRKKDAMLARYQAWYTKLRQSVGQKKSAAAGN-GMAHQQQLLGHQQKLGVRGSSACSGGNSNIRPPQGR 530          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: XP_008872234.1 (hypothetical protein H310_08313 [Aphanomyces invadans] >ETV98805.1 hypothetical protein H310_08313 [Aphanomyces invadans])

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-12
Identity = 49/136 (36.03%), Postives = 83/136 (61.03%), Query Frame = 0
Query:  216 AMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARETARVKT-LESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKK 351
            A Q+ E  RL+  +KTLG ENA LI+  E   R+R+EN+RL   M EF+ +Y +KF  L+ ALEE+ R+  +  +  +H  S +    +++ +E++++ L   L  E+EA R+KD  + +Y++W+  L+ S   K+
Sbjct:  307 AHQKFEANRLMHTIKTLGSENARLIQDTESMARLREENKRLVHAMDEFKAEYHQKFAVLKRALEEWWRQDATNQSQRSHDTSRQSMEALESKMEADLQILRDELAAEKEASRQKDVQLQRYESWFKSLKASAKAKQ 442          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: GAX28444.1 (hypothetical protein FisN_4Hh365 [Fistulifera solaris])

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-12
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = 0
Query:  221 EVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLR 344
            ++MRL+  +KTLGDENA L+++VED  R R E +  ++ M  F+E+Y  KF+ L+ AL+ F+  YPS  NP N      E  +   L   I  L   L +E+E  +K DA + KY+A+Y +++
Sbjct:  398 QIMRLMDSLKTLGDENAALLRRVEDAERARIEAKTAQKAMENFKEEYNAKFQSLKLALKRFQTDYPSCENPVNTSEFTNENHQNDQL---IRKLKADLQKEKEQSKKXDAALKKYEAFYKEVK 517          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: XP_009836991.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV73565.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 81.6 bits (200), Expect = 5.800e-12
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0
Query:  216 AMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNH-VASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKK 351
            A Q+ E  RL+  +KTLG ENA LI+  E   R+R+EN+RL   M EF+ +Y +KF  L+ ALEE+RR+  S     +H +A    ++    LE++++ L   L    +A R+KD  + +Y+ W+  L+ S   K+
Sbjct:  306 AHQKFEANRLMHTIKTLGSENAKLIQDTESMARLREENKRLVHAMDEFKTEYHQKFAVLKRALEEWRRQEASRQTTRSHDLARLELSSSESKLEADMQILRDELAAATDASRQKDVQLQRYETWFKSLKASAKAKQ 441          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: XP_009043403.1 (hypothetical protein AURANDRAFT_69387 [Aureococcus anophagefferens] >EGB01898.1 hypothetical protein AURANDRAFT_69387 [Aureococcus anophagefferens])

HSP 1 Score: 74.3 bits (181), Expect = 9.300e-10
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 0
Query:  221 EVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTN--HVASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKK 351
            E   L   ++ L   NA L+ + +D  R   E+  ++ EM  F+  + +KF  LR  LE FRR YPS  NP N               LE+E   L  RL  ER+AGRKKDA+I++Y+ WY  L+ S   K+
Sbjct:  194 EAAALARAVERLAAANAALVAERDDLRRDNAESRAIKAEMVAFKALFQQKFDALRDRLEAFRRDYPSPANPANATRPGDPDPPKSAVDLEAENRQLRARLGAERDAGRKKDAIISRYEHWYRALKASANSKR 325          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: CBJ29209.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.8 bits (177), Expect = 2.700e-9
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0
Query:  218 QQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYP 287
            QQ E+MRLL C+KTLGDEN  L+K+ ED  +VRQE+E +R EM  FQ +Y ++F  L+  L+E  R YP
Sbjct:  395 QQGEIMRLLTCLKTLGDENVSLMKECEDRDKVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYP 463          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: XP_009836990.1 (hypothetical protein H257_11690 [Aphanomyces astaci] >ETV73564.1 hypothetical protein H257_11690 [Aphanomyces astaci])

HSP 1 Score: 72.4 bits (176), Expect = 3.500e-9
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = 0
Query:  216 AMQQDEVMRLLGCMKTLGDENAMLI-------------KQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNH-VASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKK 351
            A Q+ E  RL+  +KTLG ENA LI             +  E   R+R+EN+RL   M EF+ +Y +KF  L+ ALEE+RR+  S     +H +A    ++    LE++++ L   L    +A R+KD  + +Y+ W+  L+ S   K+
Sbjct:  306 AHQKFEANRLMHTIKTLGSENAKLIQVCPRRYINSNVWQDTESMARLREENKRLVHAMDEFKTEYHQKFAVLKRALEEWRRQEASRQTTRSHDLARLELSSSESKLEADMQILRDELAAATDASRQKDVQLQRYETWFKSLKASAKAKQ 454          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: OQR85490.1 (hypothetical protein ACHHYP_11763 [Achlya hypogyna])

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-8
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 0
Query:  211 LEGVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARETARVKTLESEIESLIVRLNREREA----GRKKDAMIAKYQAWYNKLRQSVVHKK 351
            L+   A Q+ E+ RL   +KTL  ENA L ++ +D   +R+EN+RL + M  F+ +Y +KF  L+ ALEE+RR+              R  A+   +  E   L+  L  E +A     ++KDA + KY+AW+  L+ S   K+
Sbjct:  264 LKATLAQQKHELARLTHTVKTLSAENAKLRQEAQDTAGLREENQRLAQSMESFKLEYNQKFLVLKRALEEWRRQ------------QQRHEAKPAAMNIEDSQLVASLRAELDAAHASAQEKDAQLKKYEAWFTSLKASARAKQ 395          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: XP_002178943.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49641.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3 bits (168), Expect = 3.000e-8
Identity = 42/134 (31.34%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  213 GVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSEN-NP--TNHVASARETARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLR 344
            G +     ++MRL+  +K LGDENA+L+++VE     R E + ++++M  F+E+Y  +F  L+  LE FR+   S   NP   +       +  V+  E  I  L   L +E+E  ++KDA + KY+++Y +++
Sbjct:  538 GNQPANTKQLMRLMDSLKALGDENAVLMREVEGAEAARTEAKVVKQQMQHFKEEYRLRFDKLKETLERFRKGQTSHGLNPVLASEFGKTANSETVQQQEGLIRKLTADLQKEKEESKRKDAALKKYESFYLEVK 671          
BLAST of NO12G02440 vs. NCBI_GenBank
Match: OQR96647.1 (hypothetical protein THRCLA_07217 [Thraustotheca clavata])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 0
Query:  211 LEGVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVRQENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARETARVKTLESEIESLIVRLNREREAGRK----KDAMIAKYQAWYNKLRQSVVHKK 351
            L      Q+ E+ RL   +KTL  EN  L + V     + +EN+RL   M EF+ +Y +KF  L+ ALEE+RR+              R  ++ +  E++  ++I  L  E EA  +    KDA + KY++W+N L+ S   K+
Sbjct:  272 LRATITQQKHEIARLTHTVKTLTAENTKLHQDVAKNSHIAEENKRLMHSMEEFKVEYNQKFLVLKRALEEWRRQ------------QLRHDSKPQIRETDDSAMIAELKAELEAAHQEALHKDAQLKKYESWFNSLKASAKAKQ 403          
The following BLAST results are available for this feature:
BLAST of NO12G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
EWM25849.14.800e-7561.56hypothetical protein Naga_100021g74 [Nannochlorops... [more]
XP_008872234.12.000e-1236.03hypothetical protein H310_08313 [Aphanomyces invad... [more]
GAX28444.12.000e-1239.02hypothetical protein FisN_4Hh365 [Fistulifera sola... [more]
XP_009836991.15.800e-1236.76hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_009043403.19.300e-1037.12hypothetical protein AURANDRAFT_69387 [Aureococcus... [more]
CBJ29209.12.700e-953.62conserved unknown protein [Ectocarpus siliculosus][more]
XP_009836990.13.500e-933.56hypothetical protein H257_11690 [Aphanomyces astac... [more]
OQR85490.11.700e-833.33hypothetical protein ACHHYP_11763 [Achlya hypogyna... [more]
XP_002178943.13.000e-831.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR96647.11.100e-731.94hypothetical protein THRCLA_07217 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010180NSK010180Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02440.1NO12G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631040gene_5409Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g74gene4728Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02440.1NO12G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02440 ID=NO12G02440|Name=NO12G02440|organism=Nannochloropsis oceanica|type=gene|length=2266bp
GAAGGTGGCAGTGTAAATTACTGTGGTTGACAGTAGAAGGGGGATGAATG
TGAGACGTCCGCCGCGTTGACGGAGACGTATGAGCGACGCCTTTGCTTAA
CACAGCTACCTTGTGCCACCAGGGCAGTAATCGCATGCCCGATTGCCACG
GCACCCTTTTTGCCCCGCGTTGTACCTTTAGGGCAGTGGGACAGCACGGA
TCTATCATTCGCCTGTCCAAGCGCGTTTCAAAAGTACTCATTCATCCAAA
CCATCTCTGTCAACAAGACAGGCAGACGAAGCACCACCAATGCTGTCGCA
ATGGCTCCCTGACCCAGGTACGGAAGCATCTTCGGCAGAGAGTGTCCTCC
CTTTTGCGAGGAGCGGAGGCAGCCGGCCTGGGCATGGTGGGCTCGCTGGT
GGTGGCACTGGGAATGGGGTAAGGGGTAGAGATGGGGGCCCTGCCCGCGG
GGGGGGCTTGACCTCGACCCGAGTAAGGTGGTGGAAGCACATCGGCACGC
AACGCAGGCAGAGGAGCTAAGGCGAGACGGACGATTGCTCGAAGCGTTGC
AGGAGCACTTGGAGGCATCACATTGTTTCCTCGAGGCGGCGGAGCTGCTG
CGCGATGCGCATGGCGTGgtacgtgccaataatgattttgtggggagaga
tatgtgtgtgtagaccttgctatgctcgagggaggaacaaggagagaccg
tatgctaagcgcttattgacgtgcagcagtttccttagacttcttactta
aacagcacccctttctgtctcatccccctcttatccttttcctactccac
tcccctctacttagACGGGCGCTGCCCTTGTCCTCCTCTCCGACGGACAT
GCACGCCAAGCCCATACACTCCAACAACTTCTACAAAAAGGAAAGACCGC
TGCCTCCGAGACACTTCCCAAGACCACGCCCCGTCTTGTCCCCATGCCTC
CTCCTCAACCCAAAGGGTTGGCTGCCGAAGGCTCCATGTACTCCTCGACC
ATGGTGTGCAGTACCGCCAGTCTCGCGGGCACCAATGCAACAGCAGTGAC
AGCAGGCACCGCTGCCGTGGATGATATGCTGGCGTTGGAGCGAGCATTGC
AAGCTATCGGCTCTCAGCCTCTGTTTTCGAGTGGTGCGTACCAAGGAGGG
TGGGCGGGTGGAGGGCTCAATGCAGGGCCTGGTGGACGTTATTTGTCATC
GACCTTGGGCGATTCCTTTTTCCTGGTAAGCAACCGCCATGCTGCTGCAA
GGGAGGGGGCGTCGATGAATTGGGAGGGAGGGAATAGCGCCGTGAGCTCT
TCCAGGCAGGCGTTACCCCCTAGGGGAGGCGCCGTAACAGGGGCGGTATG
TGGTATTGGTGCTCAGGGAGTGTCGGGCTTACCTCCCCGAGCAGTAGGAG
GAGGAGGGGAAACCACAGAACGAGCTTCCCGCATTACCGAAAGTGGGGGC
ACGAATTTGTCGTCATCGAGTAGGAGTCCTCCTTCCTCAGTGGCAGAAGA
TTTGGTGTCGGCACCCTCCTCCTCCTCCTCTACCGCTGGAGGTGGTAGTG
GTGGTCGTGGGGGGGTTGGCTTTTTGGAAGGTGTAGAAGCGATGCAGCAA
GATGAGGTGATGCGTCTGCTTGGATGTATGAAAACGTTGGGGGATGAGAA
TGCAATGTTGATCAAGCAGGTGGAGGATGGGGGGCGAGTGCGACAGGAAA
ACGAGAGGTTGAGGAGAGAGATGGGTGAGTTTCAGGAGCAGTATGCGAAG
AAGTTTCGAGATCTGAGATCGGCACTGGAAGAGTTTAGGCGTAAATATCC
GAGTGAGAACAATCCGACGAATCACGTGGCGTCAGCAAGGGAGACGGCGC
GTGTGAAGACGCTGGAGAGTGAGATAGAGAGTTTGATCGTGCGTCTGAAC
AGGGAGAGGGAAGCCGGGAGGAAGAAGGATGCGATGATTGCCAAATATCA
AGCATGGTACAATAAGCTCAGGCAAAGCGTTGTGCATAAAAAGGGTGGCG
TGGTAGGAGATGGTGGTTTGGGAAACCAGCAGCAGCAGATGCAGCAGCAG
CCGCAGCCGAGGGTAGGGGGCGCTAGAGCTGGCAGCAGCAGCAGGAGCAG
CATTCGTCCGCCACAAGCGCGATAGGGCAAGATATTCTATGATCAAAATT
ATATACACGAAACATGTAAGAAAAGAGAAGAAGAACAGGAATGTACAGAC
TCACAACAGAAAGAGCCGAGAGCCGAAGTTGAAAAAGAAATAGCGCGACT
GCCACATGTCTCCCTT
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protein sequence of NO12G02440.1

>NO12G02440.1-protein ID=NO12G02440.1-protein|Name=NO12G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MPPPQPKGLAAEGSMYSSTMVCSTASLAGTNATAVTAGTAAVDDMLALER
ALQAIGSQPLFSSGAYQGGWAGGGLNAGPGGRYLSSTLGDSFFLVSNRHA
AAREGASMNWEGGNSAVSSSRQALPPRGGAVTGAVCGIGAQGVSGLPPRA
VGGGGETTERASRITESGGTNLSSSSRSPPSSVAEDLVSAPSSSSSTAGG
GSGGRGGVGFLEGVEAMQQDEVMRLLGCMKTLGDENAMLIKQVEDGGRVR
QENERLRREMGEFQEQYAKKFRDLRSALEEFRRKYPSENNPTNHVASARE
TARVKTLESEIESLIVRLNREREAGRKKDAMIAKYQAWYNKLRQSVVHKK
GGVVGDGGLGNQQQQMQQQPQPRVGGARAGSSSRSSIRPPQAR*
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Synonyms
Publications