NO12G02430, NO12G02430 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02430
Unique Name	NO12G02430
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1301
Alignment location	chr12:698127..699427 +

Link to JBrowse

Properties


Property Name	Value
Description	Rna terminal phosphate cyclase-like 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:698127..699427 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0042254	ribosome biogenesis
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus
GO:0005730	nucleolus

Vocabulary: **INTERPRO**
Term	Definition
IPR013792	RNA3'P_cycl/enolpyr_Trfase_a/b
IPR000228	RNA3'_term_phos_cyc
IPR016443	RNA3'_term_phos_cyc_type_2
IPR013791	RNA3'-term_phos_cycl_insert
IPR023797	RNA3'_phos_cyclase_dom

Homology

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BLAST of NO12G02430 vs. NCBI_GenBank
Match: EWM25814.1 (rna terminal phosphate cyclase-like 1 [Nannochloropsis gaditana])

HSP 1 Score: 623.2 bits (1606), Expect = 4.900e-175
Identity = 299/356 (83.99%), Postives = 330/356 (92.70%), Query Frame = 0

Query:    1 MSTIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGAEGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            MST+K KG ++FRQRLVCATLSGRPLLIT IR+++EEPGLRDFEG FLRLLERLTNGCQVEINETGTVLRYVPGII GGRH HDCG+ARSI WFLEGILPLAVF K+PL LSL+GLTND+ DVSVDN K  ILP+L++FGAEGA L VKKRGLPPSGGG V F+CPIVREL+PCNLVDAGLI+RVRGVAYCAK+SPQFANRVVTSARGLLNRLLPDV+VHTDHYKG AGG SPG+GL+LVAESTTGCL+A+DVHA+EG+LPE++G+RGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVS+VR+GQL+ H IQTLRL REAFGV FKIRAD ETGTVLLSCLG GV+N SKKVT
Sbjct:    1 MSTMKFKGCNNFRQRLVCATLSGRPLLITHIRSEEEEPGLRDFEGGFLRLLERLTNGCQVEINETGTVLRYVPGIIVGGRHEHDCGSARSISWFLEGILPLAVFAKQPLHLSLSGLTNDSFDVSVDNVKAVILPILAFFGAEGATLNVKKRGLPPSGGGHVEFSCPIVRELRPCNLVDAGLIKRVRGVAYCAKISPQFANRVVTSARGLLNRLLPDVYVHTDHYKGLAGGHSPGFGLTLVAESTTGCLLAVDVHAKEGALPEDVGERGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSKVRIGQLTMHGIQTLRLAREAFGVTFKIRADTETGTVLLSCLGSGVRNFSKKVT 356

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BLAST of NO12G02430 vs. NCBI_GenBank
Match: XP_008603974.1 (18S rRNA biogenesis protein RCL1 [Saprolegnia diclina VS20] >EQC42551.1 18S rRNA biogenesis protein RCL1 [Saprolegnia diclina VS20])

HSP 1 Score: 464.9 bits (1195), Expect = 2.200e-127
Identity = 218/355 (61.41%), Postives = 277/355 (78.03%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K +G +HFRQRLVCATLSGR +LI  IRA+ +EPG+ +FE +FLRLL+ LTNG Q+EINETGT L+Y PG I GG   HDCGT R+IGWFLE ++ LA F K+PL  +L G+TND +DVSVD+FK   LPL+ +FG  EG D KVKKRG PP GGG V+F CPIVR+L+  +L+D G I+R+RGVAYC +VSPQ ANR+V + RG+ N+LLPDV++++DHYKGA  G SPG+GLSLVAE+TTG ++  +  A  GSLPE++ +  S LL EE+++GGCVD+  Q L LLLM L PEDVS+VR G+L+ H+IQ LR +R+ FGV FKI+A+ ET TVLLSCLG G KN+SKKVT
Sbjct:   23 TLKFQGCAHFRQRLVCATLSGRRILIQNIRAESDEPGITEFEANFLRLLDNLTNGSQIEINETGTSLKYTPGFIVGGTIDHDCGTKRAIGWFLEPLVALAPFAKKPLVATLRGITNDDVDVSVDSFKAITLPLIKHFGLDEGLDFKVKKRGAPPLGGGEVIFRCPIVRQLRSVHLIDDGFIKRIRGVAYCTRVSPQTANRIVDTGRGIFNKLLPDVYIYSDHYKGAESGLSPGFGLSLVAETTTGIVLGAEAAATSGSLPEDVAKTASHLLCEEIQKGGCVDTTNQCLTLLLMTLSPEDVSKVRFGKLTPHSIQFLRHLRDFFGVTFKIKAENETKTVLLSCLGLGFKNLSKKVT 377

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: XP_009519085.1 (hypothetical protein PHYSODRAFT_487939 [Phytophthora sojae] >EGZ23797.1 hypothetical protein PHYSODRAFT_487939 [Phytophthora sojae])

HSP 1 Score: 461.5 bits (1186), Expect = 2.400e-126
Identity = 218/356 (61.24%), Postives = 278/356 (78.09%), Query Frame = 0

Query:    2 STIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFG-AEGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            S ++ +G +HFRQRLVCATLSGRPL+I  IR++DE PGLR FE S LRLL+R+T+G  +EINETGT L+Y PG++ GGR AHDCGT R++GWFLE +  LA FGK PL  +L G+TND +D SVD+FK   LPLL +FG  EG DL VKKRG PP GGG VVF CP+VREL+P +L D G I+R+RGVAY  +VSPQ +NR+V ++RGL N+LLPDV++++DHYKGA  G+SPG+ LSLVAE+TTG  +  +  AE G LPE++  R S  L EE+ +GGCVDS  QALVLL+MALGPEDV++VR G+L+ ++I+ LR +R+ FG+ FKI+ D ET TVLLSCLG G KN++KKVT
Sbjct:   15 SVLRFQGCAHFRQRLVCATLSGRPLIIEDIRSEDENPGLRPFEASLLRLLDRVTSGSHLEINETGTKLKYQPGLVLGGRVAHDCGTGRAVGWFLEVLAALAPFGKLPLHATLDGVTNDHVDSSVDSFKATTLPLLRHFGLEEGLDLVVKKRGAPPLGGGQVVFRCPLVRELRPIHLTDEGFIKRIRGVAYSTRVSPQTSNRIVETSRGLFNKLLPDVYIYSDHYKGAESGQSPGFALSLVAETTTGIFLGAEAAAEPGDLPEDVATRASHALCEEISKGGCVDSTNQALVLLMMALGPEDVAKVRFGKLTPYSIECLRHLRDFFGITFKIKPDPETKTVLLSCLGVGFKNLAKKVT 370

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: OQR94450.1 (RNA 3'-terminal phosphate cyclase [Achlya hypogyna])

HSP 1 Score: 457.6 bits (1176), Expect = 3.500e-125
Identity = 214/355 (60.28%), Postives = 277/355 (78.03%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K +G +HFRQRLVCATLSGR +LI  IR++ +EPG+ +FE +FLRLL+ +TNG Q+EINETGT L+Y PG I GG   HDCGT R+IGWFLE ++ LA F K+PL  +L G+TND +DVSVD+FK   LPL+ +FG  EG D KVKKRG PP GGG V+F CPIVREL+  +LVD G I+R+RGVAYC +VSPQ ANR+V ++RG+ N+LLPDV++++DHY+GA  G SPG+ LSLVAE+TTG ++  +  A  GSLPE++ +  S LL EE+++GGCVD+  Q L LLLM L PEDVS+VR G+L+ ++IQ LR +R+ FGV FKI+A+ E+ TVLLSCLG G KN+SKKVT
Sbjct:   22 TLKFQGCAHFRQRLVCATLSGRRVLIQNIRSESDEPGITEFEANFLRLLDNITNGSQIEINETGTSLKYTPGFIVGGTIEHDCGTKRAIGWFLEPLVCLAPFAKKPLVATLRGITNDDVDVSVDSFKAITLPLIKHFGLDEGLDFKVKKRGAPPEGGGEVIFRCPIVRELRSVHLVDEGFIKRIRGVAYCTRVSPQTANRIVDTSRGIFNKLLPDVYIYSDHYRGAESGLSPGFALSLVAETTTGVVLGAEAAATNGSLPEDVAKSASHLLCEEIQKGGCVDTTNQCLTLLLMTLSPEDVSKVRFGKLTPYSIQFLRHLRDFFGVTFKIKAEAESKTVLLSCLGLGFKNLSKKVT 376

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: POM73576.1 (RNA 3'-terminal phosphate cyclase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 457.2 bits (1175), Expect = 4.600e-125
Identity = 218/356 (61.24%), Postives = 276/356 (77.53%), Query Frame = 0

Query:    2 STIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            S ++ +G +HFRQRL+CATLSGRPL+I  IR++DE PGL  FE S LRLL+R+T+G  +EINETGT L+Y PG+I GGR  HDCGT RS+GWFL+ +  LA F K PL  +L G+TND +D SVDNFK   LPLL +FG  EG DL VKKRG PP GGG VVF CP VREL+  +LVD G I+R+RGVAY  +VSPQ +NR+V ++RGL N+LLPDV++++DHYKGA  G+SPG+ LSLVAE+TTG  +  +  AE G LPE++  R S  L EE+++GGCVDS  QALVLLLMALGPEDV++VR G+L+S++I+ LR +R+ FG+ FKI+ D ET TVLLSCLG G KN++KKVT
Sbjct:    9 SVLRFQGCAHFRQRLICATLSGRPLIIEDIRSEDENPGLTPFEASLLRLLDRVTSGSHLEINETGTKLKYQPGLILGGRVTHDCGTGRSVGWFLDVLAALAPFAKLPLHATLDGVTNDHVDNSVDNFKATTLPLLKHFGLDEGLDLVVKKRGAPPLGGGQVVFRCPQVRELRAVHLVDEGFIKRIRGVAYSTRVSPQTSNRIVETSRGLFNKLLPDVYIYSDHYKGAESGQSPGFALSLVAETTTGVFLGAEAAAEPGDLPEDVATRASHALCEEIQKGGCVDSTNQALVLLLMALGPEDVAKVRFGKLTSYSIECLRHLRDFFGITFKIKPDPETKTVLLSCLGVGFKNLAKKVT 364

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: XP_012207171.1 (18S rRNA biogenesis protein RCL1 [Saprolegnia parasitica CBS 223.65] >KDO22133.1 18S rRNA biogenesis protein RCL1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 456.1 bits (1172), Expect = 1.000e-124
Identity = 217/355 (61.13%), Postives = 275/355 (77.46%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K +G +HFRQRLVCATLSGR +LI  IRA+ +EPG+ +FE +FLRLL+ LTNG Q+EINETGT L+Y PG I GG   HDCGT R+IGWFLE ++ LA F K+PL  +L G+TND +DVSVD+FK   LPL+ +FG  EG D KVKKRG PP GGG V+F CPIVR+L+  +LVD G I+R+RGVAYC +VSPQ ANR+V + RG+ N+LLPDV++++DHYKGA  G SPG+GLSLVAE+TTG ++  +  A  GSLPE++ +  S LL EE+++GGCVD+  Q L LLLM L PEDVS+VR G+L+ H+IQ LR +R+ FGV FKI+A+ ET TVLLSCLG G K I +KVT
Sbjct:   23 TLKFQGCAHFRQRLVCATLSGRRILIQNIRAESDEPGITEFEANFLRLLDNLTNGSQIEINETGTSLKYTPGFIVGGTIDHDCGTKRAIGWFLEPLVALAPFAKKPLVATLRGITNDDVDVSVDSFKAITLPLIKHFGLDEGLDFKVKKRGAPPLGGGEVIFRCPIVRQLRSVHLVDDGFIKRIRGVAYCTRVSPQTANRIVDTGRGIFNKLLPDVYIYSDHYKGAESGLSPGFGLSLVAETTTGIVLGAEAAATSGSLPEDVAKTASHLLCEEIQKGGCVDTTNQCLTLLLMTLSPEDVSKVRFGKLTPHSIQFLRHLRDFFGVTFKIKAENETKTVLLSCLGLGFK-ICRKVT 376

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: OQS00483.1 (RNA 3'-terminal phosphate cyclase [Thraustotheca clavata])

HSP 1 Score: 454.5 bits (1168), Expect = 3.000e-124
Identity = 212/355 (59.72%), Postives = 276/355 (77.75%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K +GS+HFRQRLVC+TLSGR ++I  IR++ +EPGL ++E +FLRLL+ LTNG Q+EINETGT L+Y PG I GG   HDCGT R+IGWFLE ++ LA F K+PL  +L G+TND +DVSVD FK   LPL+ +FG  EG D KVKKRG PP GGG V F CPIVR+L+  +LVD G I+R+RGVAYC +VSPQ ANR+V ++RG+ N+L+PDV++++DHY+GA  G SPG+ LSLVAE+TTG ++  +  A  GSLPE++ +  S LL EE+++GGCVD+  Q L LLLM L PEDVS+VR G+L+ ++IQ LR +R+ FGV FKI+AD ++ TVLLSCLG G KN+SKKVT
Sbjct:   22 TLKFEGSAHFRQRLVCSTLSGRRIVIQNIRSESDEPGLTEYEANFLRLLDGLTNGSQIEINETGTALKYTPGFIVGGTIEHDCGTKRAIGWFLEPLVCLAPFAKKPLVATLRGITNDDVDVSVDTFKAITLPLIKHFGLDEGLDFKVKKRGAPPEGGGEVTFRCPIVRQLRSIHLVDEGFIKRIRGVAYCTRVSPQTANRIVDTSRGIFNKLIPDVYIYSDHYRGAESGLSPGFALSLVAETTTGVVLGAEAAATSGSLPEDVAKSASHLLCEEIQKGGCVDTSNQCLTLLLMTLSPEDVSKVRFGKLTPYSIQYLRHLRDFFGVTFKIKADNDSKTVLLSCLGLGFKNLSKKVT 376

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: XP_008870712.1 (18S rRNA biogenesis protein RCL1 [Aphanomyces invadans] >ETW00577.1 18S rRNA biogenesis protein RCL1 [Aphanomyces invadans])

HSP 1 Score: 453.4 bits (1165), Expect = 6.700e-124
Identity = 213/355 (60.00%), Postives = 270/355 (76.06%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K KG +HFRQRL+CATLSGR + I  IR D EEPG+ +FE +FLRLL+ +TNG Q+EINETGTVL+Y PG I GG   HDCGT RSIGWFLE ++ LA F K PL  +L G+TND +D SVD FK   +PLL +FG  EG D KVKKRG PP GGG V+F CP VR+L+  +LV+ G I+R+RGVAYC +VSPQ +NR+V ++RGL N+LLPDV++++DHY+G   G SPGY LSLVAE+TTG L+  +  A  GSLPE++    S LL EE++RGGCVD+  Q L LLLM L PEDVS++R G+L+ +++Q LR +R+ FGV FKI+AD E+ +VLLSCLG G KN+SKKVT
Sbjct:   26 TLKFKGCAHFRQRLICATLSGRRIRIDNIRGDSEEPGISEFEANFLRLLDSITNGSQIEINETGTVLKYAPGFIVGGTIDHDCGTKRSIGWFLEALVALAPFAKRPLVATLKGITNDDVDASVDYFKAVTIPLLKHFGLDEGLDFKVKKRGAPPLGGGEVLFRCPTVRQLKSVHLVEEGFIKRIRGVAYCTRVSPQTSNRIVDTSRGLFNKLLPDVYIYSDHYRGTDSGLSPGYALSLVAETTTGVLLGAETAATSGSLPEDVASMASHLLCEEIQRGGCVDTSNQCLALLLMTLSPEDVSKIRFGKLTPYSMQYLRHLRDFFGVTFKIKADHESKSVLLSCLGIGFKNLSKKVT 380

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: GAX99391.1 (RNA 3'-terminal phosphate cyclase, putative [Pythium insidiosum])

HSP 1 Score: 453.0 bits (1164), Expect = 8.700e-124
Identity = 208/356 (58.43%), Postives = 276/356 (77.53%), Query Frame = 0

Query:    2 STIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            + ++++G +HFRQR+VCATLSGRP+ I +IR++DEEPGL +FE +FLRL+++LTNG  +EINETGT L+Y PG I GGR  HDCGT R+IGWFLE +  LA FG  PL L+L G+TND +D+SVD FK   LPL+ +FG  EG D KVKKRG PP GGG V+F+CPIVR+LQ  +L++ G I+R+RG+AY  +VSPQ +NR+V ++RG+ N+LLPDV++++DHYKGA  G+SPG+ LSLVAE+TTG  +  +  A  G+LPE++    S LL EE+++GGCVD+  QALVLL M L PEDVS+VR G+L+ + IQ LR +R+ FG+ FKI+ D ET T+ LSCLG G KN+SKKVT
Sbjct:   16 TVLRMQGCTHFRQRIVCATLSGRPICIEEIRSEDEEPGLTEFEANFLRLMDKLTNGSHIEINETGTKLKYSPGFIVGGRIEHDCGTKRAIGWFLEAVAALAPFGXLPLHLTLRGITNDNVDMSVDAFKTTTLPLMKHFGIDEGLDFKVKKRGAPPLGGGEVIFSCPIVRQLQSIHLIEEGFIKRIRGIAYSTRVSPQTSNRIVDASRGIFNKLLPDVYIYSDHYKGAESGQSPGFALSLVAETTTGVFLGAEAAATGGNLPEDVATLASHLLCEEIKKGGCVDTTNQALVLLYMTLSPEDVSKVRFGKLTPYTIQFLRHLRDFFGITFKIKPDPETKTIYLSCLGTGFKNLSKKVT 371

[Close]

BLAST of NO12G02430 vs. NCBI_GenBank
Match: XP_009826394.1 (18S rRNA biogenesis protein RCL1 [Aphanomyces astaci] >ETV84702.1 18S rRNA biogenesis protein RCL1 [Aphanomyces astaci])

HSP 1 Score: 452.6 bits (1163), Expect = 1.100e-123
Identity = 212/355 (59.72%), Postives = 269/355 (75.77%), Query Frame = 0

Query:    3 TIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRLLERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILPLAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGA-EGADLKVKKRGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFANRVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVAIDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPEDVSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKNISKKVT 357
            T+K KG +HFRQRL+CATLSGR + I  IR D EEPG+ +FE +FLRLL+ +TNG Q+EINETGTVL+Y PG I GG   HDCGT R+IGWFLE ++ LA F K PL  +L G+TND +D SVD FK   +PL+  FG  EG D KVKKRG PP GGG V+F CP VR+L+  +L+D G I+R+RGVAYC +VSPQ ANR+V ++RGL N+LLPDV++++DHY+G   G SPGY LSLVAESTTG L+  +  A  GSLPE++    S LL EE+++GGCVD+  Q L LLLM L PEDVS+VR G+L+ +++Q LR +R+ FGV FKI+AD ++ +VLLSCLG G KN+SKKVT
Sbjct:   27 TLKFKGCAHFRQRLICATLSGRRIRIDNIRGDSEEPGITEFEANFLRLLDSITNGSQIEINETGTVLKYTPGFIVGGTIEHDCGTKRAIGWFLEALVALAPFAKRPLVATLKGITNDDVDASVDFFKAVTIPLIKQFGLDEGLDFKVKKRGAPPLGGGEVIFRCPTVRQLKSIHLIDEGFIKRIRGVAYCTRVSPQTANRIVDTSRGLFNKLLPDVYIYSDHYRGTDSGLSPGYALSLVAESTTGVLLGAETAATSGSLPEDVASMASHLLCEEIQKGGCVDTSNQCLALLLMTLSPEDVSKVRFGKLTPYSMQYLRHLRDFFGVTFKIKADHDSKSVLLSCLGIGFKNLSKKVT 381

The following BLAST results are available for this feature:

BLAST of NO12G02430 vs. NCBI_GenBank

BLAST of NO12G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25814.1	4.900e-175	83.99	rna terminal phosphate cyclase-like 1 [Nannochloro...	[more]
XP_008603974.1	2.200e-127	61.41	18S rRNA biogenesis protein RCL1 [Saprolegnia dicl...	[more]
XP_009519085.1	2.400e-126	61.24	hypothetical protein PHYSODRAFT_487939 [Phytophtho...	[more]
OQR94450.1	3.500e-125	60.28	RNA 3'-terminal phosphate cyclase [Achlya hypogyna...	[more]
POM73576.1	4.600e-125	61.24	RNA 3'-terminal phosphate cyclase [Phytophthora pa...	[more]
XP_012207171.1	1.000e-124	61.13	18S rRNA biogenesis protein RCL1 [Saprolegnia para...	[more]
OQS00483.1	3.000e-124	59.72	RNA 3'-terminal phosphate cyclase [Thraustotheca c...	[more]
XP_008870712.1	6.700e-124	60.00	18S rRNA biogenesis protein RCL1 [Aphanomyces inva...	[more]
GAX99391.1	8.700e-124	58.43	RNA 3'-terminal phosphate cyclase, putative [Pythi...	[more]
XP_009826394.1	1.100e-123	59.72	18S rRNA biogenesis protein RCL1 [Aphanomyces asta...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL125	nonsL125	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR015	ncniR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR014	ncniR014	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR007	ngnoR007	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010179	NSK010179	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G02430.1	NO12G02430.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592441	gene_5408	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100021g73	gene4727	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G02430.1	NO12G02430.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G02430 ID=NO12G02430|Name=NO12G02430|organism=Nannochloropsis oceanica|type=gene|length=1301bp
GAACGCCATACAAATACAGGCAACAACAAGCAGAGAGAGACGTATCCCCC
TACTCCACTGGCCACGCTCCACCCCCCATCTCCCACCCAACAACTCTTCC
GAATCGTCTCAAAGCCAACCCATAATGTCGACGATAAAACTTAAGGGGTC
CAGCCACTTCCGACAGCGTCTCGTATGTGCCACGCTGAGTGGACGGCCCT
TGCTTATCACCCAGATACGGGCCGACGACGAGGAGCCCGGCTTGCGGGAC
TTCGAAGGAAGCTTCTTGCGGCTGCTGGAGCGTCTTACAAACGGGTGCCA
GGTGGAGATCAATGAGACCGGCACGGTACTACGCTATGTCCCAGGCATTA
TTACGGGCGGACGGCACGCCCATGATTGCGGGACAGCTCGGTCGATCGGC
TGGTTTTTGGAGGGCATTTTGCCCTTGGCCGTGTTTGGGAAGGAGCCGTT
GGCTTTGTCCTTGACAGGACTGACCAACGATACTCTCGATGTCTCTGTGG
ATAACTTTAAAGGGGCAATACTTCCCCTGCTATCGTACTTTGGTGCGGAA
GGTGCGGACCTCAAGGTCAAAAAGCGGGGCTTGCCCCCATCTGGAGGAGG
GTTGGTAGTGTTTACATGTCCAATCGTGCGGGAGCTGCAGCCATGCAATT
TAGTGGACGCGGGATTGATAAGACGTGTTAGAGGGGTGGCATATTGTGCC
AAAGTTTCTCCTCAATTCGCCAATCGCGTCGTGACCTCTGCAAGGGGGCT
GCTAAATCGATTATTGCCTGATGTGTTTGTGCACACGGATCATTACAAGG
GAGCGGCGGGGGGTGAGAGTCCCGGGTATGGTTTAAGTTTAGTAGCAGAG
AGCACAACGGGTTGTCTGGTGGCGATCGATGTTCACGCAGAGGAAGGGTC
ATTGCCGGAGGAGATTGGGCAGCGAGGGAGTGCGTTGTTGCTTGAGGAAG
TGAGAAGGGGTGGCTGTGTGGATTCGGTCGGGCAGGCGTTAGTGTTGTTG
TTAATGGCGCTCGGACCCGAGGATGTGTCAAGGGTACGAGTTGGTCAACT
GTCATCGCATGCGATTCAAACGTTACGCTTGGTGAGGGAGGCATTTGGGG
TAATCTTCAAGATTCGCGCAGACAGGGAGACAGGGACTGTGCTGCTGTCG
TGTTTGGGGAGGGGGGTGAAGAATATCAGTAAAAAGGTTACGTAAATTTA
AGGAGGAAATTAACAAGAGGAGATCGAGGTCTATAAAACTTTTTCAAAGC
CCAAAAGGCAGAAGGAGAAAGAAGGTCAGCAAATTATTGGCGAAAAGCGG
A

protein sequence of NO12G02430.1

>NO12G02430.1-protein ID=NO12G02430.1-protein|Name=NO12G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSTIKLKGSSHFRQRLVCATLSGRPLLITQIRADDEEPGLRDFEGSFLRL
LERLTNGCQVEINETGTVLRYVPGIITGGRHAHDCGTARSIGWFLEGILP
LAVFGKEPLALSLTGLTNDTLDVSVDNFKGAILPLLSYFGAEGADLKVKK
RGLPPSGGGLVVFTCPIVRELQPCNLVDAGLIRRVRGVAYCAKVSPQFAN
RVVTSARGLLNRLLPDVFVHTDHYKGAAGGESPGYGLSLVAESTTGCLVA
IDVHAEEGSLPEEIGQRGSALLLEEVRRGGCVDSVGQALVLLLMALGPED
VSRVRVGQLSSHAIQTLRLVREAFGVIFKIRADRETGTVLLSCLGRGVKN
ISKKVT*

Synonyms

Publications