NO12G02420, NO12G02420 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G02420 vs. NCBI_GenBank
Match: EWM25851.1 (glycine cleavage system regulatory protein [Nannochloropsis gaditana]) HSP 1 Score: 370.5 bits (950), Expect = 3.500e-99 Identity = 185/219 (84.47%), Postives = 203/219 (92.69%), Query Frame = 0 Query: 1 MLSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKPVPAND 220 MLST +S+LKRAA P + M + LARA M+++SRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQIT+KL KVGGMSVITHPVTAERANQ+VPKP WKA F+VEGVNHPGLVYKVTELFFARGLRVEKLHT+TKIAPFGGTVLFLMDGTIIS+K IDF +LKEAS+SLSSFLGIDL+LKP+P ++ Sbjct: 50 MLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAQ88738.1 (hypothetical protein KFL_004550090 [Klebsormidium nitens]) HSP 1 Score: 111.3 bits (277), Expect = 3.800e-21 Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 0 Query: 46 ILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRV---AAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDL 211 ++TA+GPDR GIV ++K +L+ G+++ESRM R+ DFS++M V A A++I LS + G+ V T T+E + + S+ G ++PGLVY VTE + + +E L T T+ APFGGT LF+MDG + I L D+L + LG+D+ Sbjct: 97 VMTASGPDRPGIVSRLSKRLLELGGNVEESRMARLAGDFSILMLVTVDATVPSRAEEIRSSLSDIEGLHVFTR-WTSEDPSYLKKLQKRFRRISLRGADNPGLVYNVTEYLASLHVNIESLETGTEEAPFGGTTLFMMDGIVAIPPDISTARLASDLDALQTTLGVDI 263
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAX11367.1 (hypothetical protein FisN_22Lh037 [Fistulifera solaris]) HSP 1 Score: 106.7 bits (265), Expect = 9.500e-20 Identity = 56/186 (30.11%), Postives = 101/186 (54.30%), Query Frame = 0 Query: 34 ISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLELKPV 216 + R + + I+ A G DR GIV DI +V+D G++ +S+ ++G FSLMM V+ P + + +L + M+ + ++Q P+ + A F++EG +HPG+V+K+T GL ++K+ T+ +IAP+GG++LF M G + + D ++K+ + L L ++ L V Sbjct: 17 LKRVWLSSSTDLIINAVGKDRLGIVSDITGIVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTSLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRGVATAAAPLAAGFDAHKIKQEMEELGDTLNCEVSLTDV 201
BLAST of NO12G02420 vs. NCBI_GenBank
Match: GAX20469.1 (hypothetical protein FisN_22Hh037 [Fistulifera solaris]) HSP 1 Score: 105.9 bits (263), Expect = 1.600e-19 Identity = 60/194 (30.93%), Postives = 105/194 (54.12%), Query Frame = 0 Query: 25 TLAR--ASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLEL 213 TLAR + RA + + I+ A G DR GIV DI +V+D G++ +S+ ++G FSLMM V+ P + + +L + M+ + ++Q P+ + A F++EG +HPG+V+K+T GL ++K+ T+ +IAP+GG++LF M G + + D ++K+ + L L ++ L Sbjct: 6 TLARNWQRQPALKRAWLSSSTDLIINAVGKDRLGIVSDITGMVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTNLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRGVATAAAPLAAGFDAHKIKQEMEELGDTLNCEVTL 198
BLAST of NO12G02420 vs. NCBI_GenBank
Match: XP_002179786.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48772.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 103.6 bits (257), Expect = 8.000e-19 Identity = 64/207 (30.92%), Postives = 98/207 (47.34%), Query Frame = 0 Query: 13 AAQPITLRMAGLTLARASMMTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIIS----EKAIDFKELKEASDSLSSFLGIDLELKPV 216 AA I R + S + + S I+ A G DR GIV DI +V+++ G++ ES+ R+G FSLMM V+ P + + KL + M+ A + P + F + G ++PG+V+K+T GL +EKL T+ +IAP GGTVLF M G + D ++K L L D+ ++ V Sbjct: 3 AASRILTRPVARAFGQPSAYSFTTLGNGGTSDLIINAVGSDRLGIVSDITGMVIEHGGNVGESQAARLGSHFSLMMLVSVPSEHLEGLQTKLRNLPDMNAAIFEAQA-GSKPTTPATGYSGYFRLAGADNPGIVHKITSALVKHGLSIEKLGTDKEIAPHGGTVLFKMTGVASAAAPLANGFDIAKIKSELIELGDSLNCDVSMEDV 208
BLAST of NO12G02420 vs. NCBI_GenBank
Match: XP_002297198.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86523.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 100.9 bits (250), Expect = 5.200e-18 Identity = 65/220 (29.55%), Postives = 111/220 (50.45%), Query Frame = 0 Query: 2 LSTLASSLKRAAAQPITLRMAGLTLARASMMTISRASTPAD-SHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSK-VGGMSVITHPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAI----DFKELKEASDSLSSFLGIDLELKPV 216 + T+ S R A PI ++++ T + T S+P++ H ++ G DR GIV D+ +++ ++ G++ ESR +G FSLMM V + D + L + V GMS R ++ PK + F + G ++PGLV+K+T L + + T + APFGGT LF M+G ++ + + D+K++KE + + D+E V Sbjct: 6 IRTVISPSPRLVA-PIGVKLSASTTNATNTSTTRPFSSPSNKKHLVINTVGTDRPGIVADVTRIITNHGGNVGESRAQLLGGHFSLMMLVEIAEGDMKSLHGDLERGVEGMSTTCFDAVDPRLVEVSPKIGFAGHFKLSGADNPGLVHKLTSALARNSLTIGSMQTFQEEAPFGGTELFTMEGKAVAYQPLASNFDWKKIKEELVEMGESMNCDVEFSDV 224
BLAST of NO12G02420 vs. NCBI_GenBank
Match: OMJ87560.1 (hypothetical protein SteCoe_10740 [Stentor coeruleus]) HSP 1 Score: 100.1 bits (248), Expect = 8.900e-18 Identity = 58/187 (31.02%), Postives = 103/187 (55.08%), Query Frame = 0 Query: 32 MTISRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPD----ADQITRKLSKVGGMSVIT--HPVTAERANQIVPKPVWKAIFSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLEL 213 M + R T A ILT TG DR G+V DI ++ D +G+I +SRM ++ +FSLM+ + P+ + D++ + +G +T HP A + + +K + G + PG+VY +T++ ++G+ ++K+ T + AP GGT LF + + K IDF + +E+ SL S L +++++ Sbjct: 1 MLLRRLFTSAKRKLILTGTGVDRIGLVKDITGIIFDEDGNIADSRMSKLENNFSLMVLIDIPEKNYQSFQDKVKKSREDLGIHLDVTDLHPFPA----KTIEIQDYKVFIELIGDDQPGIVYSLTQILASQGVNIDKIDTFSFSAPMGGTTLFKVKSRVTVNKIIDFDKFQESLKSLESSLVVEIKV 183
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_054892180.1 (MULTISPECIES: glycine cleavage system protein R [Pseudomonas]) HSP 1 Score: 98.2 bits (243), Expect = 3.400e-17 Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = 0 Query: 44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215 H +LT PD+AG V IA+ + D++G+ ESRM RM F+ ++RVA P + D++ L K+G + + AE + I P WK I + G + PG+V +T L +G+ +E+L TE + AP LF D + + +L++ +SL+ L ++L+L+P Sbjct: 3 HLVLTVIAPDKAGQVDRIAQCISDHSGNWLESRMSRMAGQFAGILRVAVPAENYDELVESLQKLGDHGI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNLERLSTEVRPAPMSSEPLFHADALLALPLTLSLNDLQQKLESLADDLMVELKLRP 170
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_028689075.1 (MULTISPECIES: glycine cleavage system protein R [Pseudomonas] >ODB39339.1 glycine cleavage system protein R [Pseudomonas mosselii] >OWQ34999.1 glycine cleavage system protein R [Pseudomonas sp. DrBHI1]) HSP 1 Score: 97.4 bits (241), Expect = 5.700e-17 Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = 0 Query: 44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215 H +LT PD+AG V IA+ + D+NG+ ESRM RM F+ ++RVA P + ++ L K+G + + AE + I P WK I + G + PG+V +T L +G+ VE+L TE + AP LF D + + ++L+ +SL+ L ++L L+P Sbjct: 3 HLVLTVIAPDKAGQVERIAQCIADHNGNWLESRMSRMAGQFAGILRVAVPAENYAELVESLQKLGDHGI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNVERLSTEVRPAPMSSEPLFHADALLALPLTLSLEDLQARLESLADDLMVELRLRP 170
BLAST of NO12G02420 vs. NCBI_GenBank
Match: WP_065864528.1 (glycine cleavage system protein R [Pseudomonas putida] >OCT21863.1 glycine cleavage system protein R [Pseudomonas putida] >OCT26466.1 glycine cleavage system protein R [Pseudomonas putida] >OCT30821.1 glycine cleavage system protein R [Pseudomonas putida] >OCT35239.1 glycine cleavage system protein R [Pseudomonas putida]) HSP 1 Score: 97.4 bits (241), Expect = 5.700e-17 Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = 0 Query: 44 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITRKLSKVGGMSVITHPVTAERANQIVPKPVWKAI-FSVEGVNHPGLVYKVTELFFARGLRVEKLHTETKIAPFGGTVLFLMDGTIISEKAIDFKELKEASDSLSSFLGIDLELKP 215 H +LT PD+AG V IA+ + D++G+ ESRM RM F+ ++RVA P + D++ L K+G + + AE + I P WK I + G + PG+V +T L +G+ +E+L TE + AP LF D + + +L++ +SL+ L ++L+L+P Sbjct: 3 HLVLTVIAPDKAGQVERIAQCISDHSGNWLESRMSRMAGQFAGILRVAVPAENYDELVESLQKLGEHDI--RVLIAE--SGIEPSCTWKPIAMELVGNDRPGIVRDITRLLAEQGVNLERLSTEVRPAPMSSEPLFHADALLALPLTLSLDDLQQRLESLADDLMVELKLRP 170 The following BLAST results are available for this feature:
BLAST of NO12G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G02420 ID=NO12G02420|Name=NO12G02420|organism=Nannochloropsis oceanica|type=gene|length=1734bpback to top protein sequence of NO12G02420.1 >NO12G02420.1-protein ID=NO12G02420.1-protein|Name=NO12G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bpback to top Synonyms
Publications
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