NO12G02360, NO12G02360 (gene) Nannochloropsis oceanica

Overview
NameNO12G02360
Unique NameNO12G02360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr12:674098..674991 +

Link to JBrowse

Properties
Property NameValue
DescriptionAlpha-ketoglutarate-dependent taurine dioxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:674098..674991 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR003819Taurine_dOase
Homology
BLAST of NO12G02360 vs. NCBI_GenBank
Match: EWM25825.1 (alpha-ketoglutarate-dependent taurine dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 1.700e-117
Identity = 213/297 (71.72%), Postives = 247/297 (83.16%), Query Frame = 0
Query:    2 LSSSLSSFSLFPSSSSFSSMASIA--LAPKSFGLRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYDNVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLP 297
            L+S   S S  PS++S S+M   A     K+F LRPLTGA+GAELT +DL+A+  +S+   EI+ AF +Y VLVFRNQ  LS  DLL IA  FGEVEARPVVKAQYGLP VH+L+RE G LGHYGE+WHQDCSYM HPPLGALLYG+EVPAYGNDTVFC+M L L+TLSPAF D+L PLRAVHSA+KMV+KDP    LAYD V+HPV+R HP+TG L+LFVNPFFTKH  GMT+EESRPIL+HLFEIMTR+ELQCRVR+E+DTLV+WDNRCV HQAIRDNTR+RRVMRRVEIRGD+P
Sbjct:   46 LNSVPLSSSPRPSTASLSAMPCSASWTEAKAFHLRPLTGALGAELTGIDLKALVANSRAIYEIKEAFHEYSVLVFRNQACLSAKDLLRIAEFFGEVEARPVVKAQYGLPMVHDLIREKGTLGHYGEVWHQDCSYMHHPPLGALLYGMEVPAYGNDTVFCDMSLALKTLSPAFVDLLKPLRAVHSAYKMVKKDPSVASLAYDEVEHPVVRRHPDTGELSLFVNPFFTKHLAGMTEEESRPILEHLFEIMTRAELQCRVRWERDTLVVWDNRCVAHQAIRDNTRERRVMRRVEIRGDMP 342          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: XP_005856337.1 (alpha-ketoglutarate-dependent taurine dioxygenase, partial [Nannochloropsis gaditana CCMP526] >EKU20019.1 alpha-ketoglutarate-dependent taurine dioxygenase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 331.3 bits (848), Expect = 3.200e-87
Identity = 154/205 (75.12%), Postives = 175/205 (85.37%), Query Frame = 0
Query:   55 SSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYDNVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYE 260
            +S+   EI+ AF +Y VLVFRNQ  LS  DLL IA  FGEVEARPVVKAQYGLP VH+L+RE G LGHYGE+WHQDCSYM HPPLGALLYG+EVPAYGNDTVFC+M L L+TLSPAF D+L PLRAVHSA+KMV+KDP    LAYD V+HPV+R HP+TG L+LFVNPFFTKH  GMT+EESRPIL+HLFEIMTR+ELQCRVR+E
Sbjct:    2 NSRAIYEIKEAFHEYSVLVFRNQACLSAKDLLRIAEFFGEVEARPVVKAQYGLPMVHDLIREKGTLGHYGEVWHQDCSYMHHPPLGALLYGMEVPAYGNDTVFCDMSLALKTLSPAFVDLLKPLRAVHSAYKMVKKDPSVASLAYDEVEHPVVRRHPDTGELSLFVNPFFTKHLAGMTEEESRPILEHLFEIMTRAELQCRVRWE 206          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_070960763.1 (taurine dioxygenase [Hyphomonas sp. Mor2])

HSP 1 Score: 220.7 bits (561), Expect = 6.100e-54
Identity = 115/274 (41.97%), Postives = 154/274 (56.20%), Query Frame = 0
Query:   33 LRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFK--------MVQKDPMATYLAYD--NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLP 297
            + P+ GA+GAE++ + L A   S+   DEI RAF  + V+ FR Q GL+       A  FG +   P VK   G P++ E+++EP    ++G  WH D S++  P LG++LYGVE+PA+G DT+F N     + LS    +ML  L A+HSA +           +  M T +A D    +HPVIRTHPETG   L+VNP FT  F GMT  ESRP+L  LFE        CR R+ +D +  WDNRC  H A+ D   QRR MRR  + GD P
Sbjct:    7 ITPIAGALGAEISGVSL-ADDLSNAQFDEIHRAFLDHHVIFFRGQTGLTPEAQKRFARRFGTLNVHPYVKGMDGHPELLEIIKEPEDKLNFGGGWHSDMSFLEQPALGSILYGVEIPAFGGDTLFANQIAAYEALSDGMKEMLGGLNAIHSASREYSAKGQSAQDRQSMQTEVAVDAPEYEHPVIRTHPETGRKGLYVNPAFTLRFAGMTKRESRPLLNFLFEHSRDERFTCRFRWSQDAVAFWDNRCCWHYALNDYQGQRRHMRRATVNGDRP 279          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_045447162.1 (taurine dioxygenase [Tepidicaulis marinus] >GAK45686.1 taurine dioxygenase [Tepidicaulis marinus])

HSP 1 Score: 211.8 bits (538), Expect = 2.800e-51
Identity = 111/280 (39.64%), Postives = 164/280 (58.57%), Query Frame = 0
Query:   29 KSFGLRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSA--------FKMVQKDPMATYLAYDNV---DHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            K+  ++P++GA+GAE+   DL A    ++  D+I +AF  + V+ FR+Q  L+          FG +   P VK   G P++ E+++EP    ++G  WH D S+ + P LG++LYG+++P YG DT+F +     +TLS     +L  L A+H+A            ++  M    A ++V   +HPV+RTHPETG  AL+VNP FT+ F GMT  ES+P+L+ L+   TR E  CR R++K +L  WDNRCV H A+ D    RR MRRV + GDLPR
Sbjct:    4 KTIDVKPVSGALGAEIFGADLGA-DLDNETFDDIHQAFLDHQVIFFRDQ-NLTPEKHKEFGRRFGSLNIHPYVKGMDGHPEIMEIIKEPEDKLNFGGGWHSDMSFQKEPALGSILYGIDIPPYGGDTLFASQYRAYETLSDGMKKLLDGLTALHTAKAEYGRAGNSAQKRSAMDVKNAEEDVPAYEHPVVRTHPETGRKALYVNPAFTERFSGMTRAESKPLLEFLYAHATREEFTCRFRWQKGSLAFWDNRCVQHFALNDYHGHRRHMRRVTVNGDLPR 281          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: PKQ04719.1 (taurine dioxygenase [Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11])

HSP 1 Score: 210.3 bits (534), Expect = 8.200e-51
Identity = 113/282 (40.07%), Postives = 161/282 (57.09%), Query Frame = 0
Query:   26 LAPKSFGLRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSA--------FKMVQKDPMATYLAYDNV---DHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLP 297
            +A K+ G++P++GA+GAE+  +DL +   S++  D I +AF  + V+ FR+Q  ++     A    FG +   P VK   G P++  +V+EP    ++G  WH D S++  P LG++LY  EVP YG DT++ N  L  +TLS     ML  L+AVH+A            ++  M    A D+    +HPV+RTHPETG  AL+VNP FT+ F+GMT  ESRP+L  LFE  T+    CR R+ KD +  WDNR   H A+ D    RR M RV + GD P
Sbjct:    1 MACKTIGVKPISGALGAEIEGVDL-SKDLSNETFDAIHQAFLDHVVIFFRDQ-HITREQHKAFGRRFGTLNIHPYVKGMDGHPEIMRIVKEPEDRVNFGGGWHSDMSFLEEPALGSILYAREVPPYGGDTLWANQYLAYETLSDGMKKMLEGLKAVHTAKGEYSERGHSAQKRKGMEVSTAGDDTPSFEHPVVRTHPETGRKALYVNPAFTEKFVGMTSRESRPLLNFLFEHATQEPFTCRFRWTKDAIAFWDNRAAQHFALNDYHGHRRHMERVTVDGDRP 280          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_034824600.1 (taurine dioxygenase [Hyphomonas sp. T16B2] >KCZ52297.1 hypothetical protein HY2_08795 [Hyphomonas sp. T16B2])

HSP 1 Score: 209.9 bits (533), Expect = 1.100e-50
Identity = 105/275 (38.18%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   33 LRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYD----------NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            ++PLTG +GAE+   DL+A   S++  D + +AF  Y V+V R Q GL+       A  FG +   P VK     P++ E+++EP +  ++G  WH D S++  P LG++L+ +EVP YG DT+F + +   + LSP     L  + A+H+A K    D  +  +               +HPVIRTHPETG   LF+NP FT  F G + +ESRP+L +LF++       CR+R++   + +WDNRCV H A+ D    RR MRR  I GD PR
Sbjct:    5 IQPLTGTLGAEIRGADLKA-GLSNEAFDAVHQAFLDYKVIVLRGQQGLTPDQQKDFARRFGTLNIHPYVKGMGRHPELLEIIKEPDEKTNFGGGWHSDMSFLEEPALGSILHAIEVPPYGGDTLFADQQAAYERLSPGLKKTLEGMSAIHTASKEYGADGYSAAVRQSMDAKSAPDAPEYEHPVIRTHPETGRKGLFINPAFTLRFAGWSRKESRPLLTYLFDLSREERNTCRIRWQAGDVTMWDNRCVWHYALNDYHGHRRHMRRATINGDKPR 278          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_034761565.1 (MULTISPECIES: taurine dioxygenase [Hyphomonas] >KCZ49853.1 hypothetical protein HY17_01770 [Hyphomonas sp. CY54-11-8])

HSP 1 Score: 209.5 bits (532), Expect = 1.400e-50
Identity = 106/278 (38.13%), Postives = 156/278 (56.12%), Query Frame = 0
Query:   30 SFGLRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYD----------NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            S  ++PLTG +GAE+  +DL+    S+   D + +AF  Y V+V R Q G++     A A  FG +   P VK   G P++ E+++EP +  ++G  WH D S++  P LG++L+ +EVP +G DT+F + +     LSP     L  + A+H+A K    D  +  +               +HPVIRTHPETG   LF+NP FT  F G + +ESRP+L +LF++       CRVR+++  + +WDNRCV H A+ D    RR MRR  I GD PR
Sbjct:    2 SMTIQPLTGTLGAEIHGVDLKQ-DLSNAEFDAVHQAFLDYKVIVLRGQQGMTPDQHKAFARRFGTLNIHPYVKGMEGHPELLEIIKEPEEKTNFGGGWHSDMSFLEEPALGSILHALEVPPFGGDTLFADQQAAYDRLSPGLKKTLEGMTAIHTASKEYGADGYSAAVRQSMDAKSAPDAPEYEHPVIRTHPETGRKGLFINPAFTLRFAGWSRKESRPLLNYLFDLSREERNTCRVRWQEGDVTMWDNRCVWHYALNDYHGHRRHMRRATINGDRPR 278          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_035577660.1 (taurine dioxygenase [Hyphomonas jannaschiana] >KCZ91362.1 taurine dioxygenase [Hyphomonas jannaschiana VP2])

HSP 1 Score: 209.5 bits (532), Expect = 1.400e-50
Identity = 106/275 (38.55%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   33 LRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYD----------NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            ++PLTG +GAE+  +DL+    S+   D + +AF  Y V+V R Q G++     A A  FG +   P VK   G P++ E+++EP +  ++G  WH D S++  P LG++L+ +EVP YG DT+F + +     LSP     L  + A+H+A K    D  +  +               +HPVIRTHPETG   LF+NP FT  F G + +ESRP+L +LF++       CRVR++   + +WDNRCV H A+ D    RR MRR  I GD PR
Sbjct:    3 IQPLTGTLGAEIHGVDLKQ-DLSNAEFDAVHQAFLDYKVIVLRGQQGMTPDQHKAFARRFGTLNIHPYVKGMDGHPELLEIIKEPEEKTNFGGGWHSDMSFLEEPALGSILHALEVPPYGGDTLFADQQAAYDRLSPGLKKTLEGMTAIHTASKEYGADGYSAAVRQSMDAKSAPDAPEYEHPVIRTHPETGRKGLFINPAFTLRFAGWSRKESRPLLNYLFDLSREERNTCRVRWQAGDVTMWDNRCVWHYALNDYHGHRRHMRRATINGDRPR 276          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: KCZ92642.1 (taurine dioxygenase [Hyphomonas johnsonii MHS-2])

HSP 1 Score: 209.5 bits (532), Expect = 1.400e-50
Identity = 109/275 (39.64%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   33 LRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFK--------MVQKDPMATYLAYD--NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            + PL+G +GAE+T LDL     S+   D+I  AF  + VLVFR Q  L+     A    FG +   P V+A  G P++ E+++EP    ++G  WH D S++  P LG++L+ +E P YG DT+F + +     LS      L+ + A+HSA K           +  M    A D    +HPVIRTHPETG   L+VNP FT  F G T  ES+P+L +LF++  + +  CRVR++   + +WDNRC  H A+ D   QRR MRRV + GD PR
Sbjct:   35 ITPLSGTLGAEITGLDLSG-ELSNAAFDQIHSAFMAHKVLVFRGQHTLTPDQHKAFGRRFGTLNVHPYVEAMPGHPEILEIIKEPEDTVNFGGGWHTDMSFLEEPALGSILHAIETPPYGGDTLFADQQAAYDALSDGLKKTLSGMTAIHSAGKEYGAKGISAKDRKSMQATRADDAPEYEHPVIRTHPETGRKGLYVNPAFTLRFAGWTRAESKPLLNYLFDLSRQEQFTCRVRWQAGDVTMWDNRCTWHFALNDYAGQRRHMRRVTVNGDRPR 308          
BLAST of NO12G02360 vs. NCBI_GenBank
Match: WP_035615457.1 (taurine dioxygenase [Hyphomonas johnsonii])

HSP 1 Score: 209.5 bits (532), Expect = 1.400e-50
Identity = 109/275 (39.64%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   33 LRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFK--------MVQKDPMATYLAYD--NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR 298
            + PL+G +GAE+T LDL     S+   D+I  AF  + VLVFR Q  L+     A    FG +   P V+A  G P++ E+++EP    ++G  WH D S++  P LG++L+ +E P YG DT+F + +     LS      L+ + A+HSA K           +  M    A D    +HPVIRTHPETG   L+VNP FT  F G T  ES+P+L +LF++  + +  CRVR++   + +WDNRC  H A+ D   QRR MRRV + GD PR
Sbjct:    6 ITPLSGTLGAEITGLDLSG-ELSNAAFDQIHSAFMAHKVLVFRGQHTLTPDQHKAFGRRFGTLNVHPYVEAMPGHPEILEIIKEPEDTVNFGGGWHTDMSFLEEPALGSILHAIETPPYGGDTLFADQQAAYDALSDGLKKTLSGMTAIHSAGKEYGAKGISAKDRKSMQATRADDAPEYEHPVIRTHPETGRKGLYVNPAFTLRFAGWTRAESKPLLNYLFDLSRQEQFTCRVRWQAGDVTMWDNRCTWHFALNDYAGQRRHMRRVTVNGDRPR 279          
The following BLAST results are available for this feature:
BLAST of NO12G02360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25825.11.700e-11771.72alpha-ketoglutarate-dependent taurine dioxygenase ... [more]
XP_005856337.13.200e-8775.12alpha-ketoglutarate-dependent taurine dioxygenase,... [more]
WP_070960763.16.100e-5441.97taurine dioxygenase [Hyphomonas sp. Mor2][more]
WP_045447162.12.800e-5139.64taurine dioxygenase [Tepidicaulis marinus] >GAK456... [more]
PKQ04719.18.200e-5140.07taurine dioxygenase [Alphaproteobacteria bacterium... [more]
WP_034824600.11.100e-5038.18taurine dioxygenase [Hyphomonas sp. T16B2] >KCZ522... [more]
WP_034761565.11.400e-5038.13MULTISPECIES: taurine dioxygenase [Hyphomonas] >KC... [more]
WP_035577660.11.400e-5038.55taurine dioxygenase [Hyphomonas jannaschiana] >KCZ... [more]
KCZ92642.11.400e-5039.64taurine dioxygenase [Hyphomonas johnsonii MHS-2][more]
WP_035615457.11.400e-5039.64taurine dioxygenase [Hyphomonas johnsonii][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL125nonsL125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR015ncniR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR007ngnoR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010169NSK010169Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G02360.1NO12G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592418gene_5400Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g64gene4719Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G02360.1NO12G02360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G02360 ID=NO12G02360|Name=NO12G02360|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCCGTCGTCGTCCTC
CTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGTCTTTCGGTTTAC
GTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAACCTAGACCTCCGC
GCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAGACGAGCATTTCA
AAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCCTGAGCGATGCAG
ACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAGGCTCGGCCCGTA
GTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTTGGTGCGGGAGCC
CGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAGATTGTTCTTACA
TGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTGGAGGTCCCCGCG
TATGGCAATGACACGGTTTTCTGTAACATGGAATTGGTGCTCCAGACACT
CTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGGCCGTGCATTCCG
CCTTCAAAATGGTGCAGAAGGATCCAATGGCAACATATTTGGCGTACGAT
AACGTCGATCACCCCGTCATCCGCACACATCCCGAGACCGGTGCCCTCGC
CCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGGGCATGACAGACG
AAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATTATGACCAGGTCC
GAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATTGGTGCTTTGGGA
CAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATACTCGACAGCGGA
GGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCTAGGTAG
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protein sequence of NO12G02360.1

>NO12G02360.1-protein ID=NO12G02360.1-protein|Name=NO12G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MLSSSLSSFSLFPSSSSFSSMASIALAPKSFGLRPLTGAMGAELTNLDLR
AVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPV
VKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPA
YGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYD
NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRS
ELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR*
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Synonyms
Publications